Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.6e-226 789.3 455 100.0
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.6e-173 613.2 464 81.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.9e-158 563.1 435 77.2
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.1e-129 464.5 463 63.9
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.4e-113 413.3 474 57.4
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 2.9e-111 406.4 465 60.0
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 9.8e-107 391.3 461 57.3
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 6.2e-101 372.1 423 57.4
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.6e-96 357.5 422 54.0
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.9e-94 350.5 424 54.0
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 5.4e-89 332.4 457 53.2
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.1e-87 325.9 452 54.0
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 2.1e-85 320.5 387 53.5
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 4.0e-84 316.2 440 53.0
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 6.6e-79 298.9 460 49.3
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 6.6e-79 298.9 460 49.3
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 8.7e-79 298.5 457 50.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 1.9e-78 297.4 477 45.7
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 9.0e-76 288.5 453 48.1
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 2.0e-75 287.3 452 48.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 2.6e-75 287.0 444 46.4
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.6e-75 285.4 345 55.9
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 7.6e-75 285.4 424 49.1
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.9e-73 280.8 338 56.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 2.7e-72 276.9 456 48.9
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.7e-71 274.2 388 48.2
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 3.0e-71 273.5 477 47.2
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.1e-70 271.6 481 47.2
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.5e-70 271.2 426 47.2
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 2.5e-70 270.4 413 47.9
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 2.1e-69 267.3 363 48.5
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.6e-67 260.4 386 46.4
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.6e-67 260.4 528 43.8
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 3.8e-66 256.5 482 45.4
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 8.4e-66 255.4 401 45.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.1e-65 255.0 446 46.2
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.9e-65 254.2 437 44.9
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.4e-65 252.7 423 46.3
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 5.4e-65 252.7 385 44.2
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.1e-65 252.3 476 43.1
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.6e-64 251.1 500 40.8
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.6e-64 251.1 463 41.9
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.0e-63 248.4 530 38.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.3e-63 248.1 517 42.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.8e-63 247.7 529 38.8
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.9e-63 246.5 429 44.3
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 8.7e-63 245.4 474 42.2
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.1e-62 245.0 420 44.3
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.1e-62 245.0 420 44.3
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 1.9e-62 244.2 370 43.8
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.9e-62 244.2 419 43.7
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.3e-62 243.0 467 45.8
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 7.4e-62 242.3 500 41.8
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 9.6e-62 241.9 446 42.4
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 3.7e-61 240.0 453 41.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 6.2e-61 239.2 462 42.9
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 8.1e-61 238.8 382 43.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.1e-60 236.9 462 45.7
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 6.9e-60 235.7 395 45.3
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.5e-59 234.6 508 43.5
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 1.5e-59 234.6 406 44.3
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 7.6e-59 232.3 486 40.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.7e-58 231.1 403 43.7
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.9e-58 230.3 379 44.9
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 4.9e-58 229.6 379 44.6
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-55 221.1 389 40.6
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.8e-55 221.1 389 40.6
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 2.3e-55 220.7 488 41.8
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 3.9e-55 219.9 539 37.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 7.4e-54 215.7 352 52.0
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 9.6e-54 215.3 237 54.4
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 1.3e-53 214.9 499 39.1
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-53 214.9 419 44.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.6e-53 214.5 440 41.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 4.8e-53 213.0 477 38.2
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 4.8e-53 213.0 233 54.5
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 4.8e-53 213.0 458 41.9
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.4e-52 210.7 408 44.1
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.1e-52 210.3 566 37.3
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 4.0e-52 209.9 453 40.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 4.0e-52 209.9 444 40.5
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 2.0e-51 207.6 406 41.9
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.0e-51 207.6 578 34.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 4.5e-51 206.5 514 38.3
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.5e-51 206.5 516 37.8
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 5.8e-51 206.1 486 37.9
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 1.7e-50 204.5 471 37.4
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.7e-50 204.5 474 40.3
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 2.9e-50 203.8 458 41.3
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.5e-49 199.5 490 36.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 9.3e-49 198.7 525 35.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.1e-48 197.6 408 41.9
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.3e-47 194.1 491 36.7
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 5.1e-47 193.0 351 45.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.9e-46 191.0 483 35.2
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.5e-46 190.7 503 36.4
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.7e-46 188.7 515 35.9
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 2.2e-45 187.6 515 37.5
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 2.2e-45 187.6 392 40.6
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.8e-45 187.2 555 36.8
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.7e-45 186.8 555 36.6
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.8e-45 186.4 449 35.6
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.3e-45 186.0 430 36.5
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.4e-44 184.9 503 35.6
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.4e-44 184.1 451 38.1
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 6.9e-44 182.6 420 37.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 6.9e-44 182.6 478 37.7
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.9e-41 174.5 368 45.4
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 3.2e-41 173.7 400 37.0
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 9.4e-41 172.2 457 36.8
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.6e-40 169.9 533 34.3
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.0e-39 168.7 556 32.9
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.8e-39 167.9 508 34.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 2.0e-38 164.5 487 33.9
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 4.3e-38 163.3 450 35.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.3e-37 161.8 234 53.8
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.7e-37 160.2 520 33.5
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.7e-37 160.2 520 33.5
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 8.2e-37 159.1 479 33.8
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.1e-36 157.1 549 32.1
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 9.1e-36 155.6 479 33.4
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.2e-35 155.2 523 32.7
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 3.4e-35 153.7 478 33.3
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.0e-34 152.1 479 33.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 1.0e-34 152.1 464 36.0
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 5.0e-34 149.8 478 33.1
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 4.2e-33 146.7 418 34.2
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 4.2e-33 146.7 503 32.0
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.4e-33 145.6 532 32.0
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 3.6e-32 143.7 367 36.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.7e-31 139.4 203 50.2
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 8.8e-31 139.0 221 47.1
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.0e-30 137.9 396 33.1
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 2.6e-30 137.5 521 31.7
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 4.4e-30 136.7 459 37.9
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.2e-29 134.4 559 31.1
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 1.4e-28 131.7 396 35.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.0e-27 127.9 433 33.5
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.0e-27 127.9 428 33.2
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 2.6e-27 127.5 412 34.2
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 7.7e-27 125.9 392 35.2
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.9e-26 124.0 382 33.0
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.1e-25 122.1 422 34.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 5.5e-25 119.8 404 33.4
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 9.4e-25 119.0 449 31.4
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.0e-23 114.0 395 33.7
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 6.7e-23 112.8 409 33.5
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 6.7e-23 112.8 536 29.3
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.1e-22 112.1 144 50.7
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.1e-22 112.1 488 28.5
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 5.7e-22 109.8 144 47.9
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.8e-21 106.7 390 30.8
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 9.1e-20 102.4 515 28.2
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 9.1e-20 102.4 511 32.3
COL.COLO4_36255 Corchorus olitorius HOM05D003733 ORTHO05D004035 1.2e-19 102.1 406 33.7
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.5e-17 95.1 382 31.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.5e-17 94.4 96 60.4
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 9.4e-17 92.4 342 32.2
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.2e-16 92.0 535 28.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.0e-15 87.0 403 32.3
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.5e-14 85.1 309 31.1
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-14 85.1 378 32.3
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 7.5e-14 82.8 443 27.1
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 9.7e-14 82.4 307 30.0
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 1.7e-13 81.6 408 31.1
CARHR207720 Cardamine hirsuta HOM05D003733 ORTHO05D004035 2.2e-13 81.3 397 28.5
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.7e-13 80.5 408 31.1
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.1e-12 79.0 156 42.3
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.4e-12 78.6 389 29.0
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 4.1e-12 77.0 95 48.4
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.0e-10 72.4 83 54.2
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.2e-10 71.2 462 28.4
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 3.8e-10 70.5 440 29.1
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.0e-10 70.1 83 53.0
Mapoly0034s0125 Marchantia polymorpha HOM05D025130 ORTHO05D030134 9.4e-09 65.9 588 26.0
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 5.2e-07 60.1 121 41.3
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 6.8e-07 59.7 418 27.8
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-06 58.9 133 37.6
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 1.2e-06 58.9 388 26.8
CBR_g55949 Chara braunii HOM05D003733 ORTHO05D004035 4.4e-06 57.0 78 48.7


User provided reference genes

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