Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 2.3e-215 752.3 487 100.0
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 6.2e-99 365.5 519 64.2
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 1.5e-92 344.4 488 61.9
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 6.2e-83 312.4 488 60.0
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 1.6e-78 297.7 485 59.6
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 3.0e-77 293.5 483 57.6
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 8.7e-77 292.0 480 54.6
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 4.3e-76 289.7 485 56.5
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 7.3e-76 288.9 485 56.5
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 2.1e-75 287.3 480 57.3
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 2.1e-75 287.3 489 57.1
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 2.4e-74 283.9 483 56.3
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 3.1e-74 283.5 479 56.6
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 3.1e-74 283.5 479 56.8
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 4.0e-74 283.1 485 50.7
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 4.5e-73 279.6 488 55.3
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 5.8e-73 279.3 483 54.7
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 1.7e-72 277.7 479 59.5
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 2.2e-72 277.3 480 49.6
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 2.9e-72 276.9 486 53.3
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 3.8e-72 276.6 484 49.6
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 8.4e-72 275.4 481 53.6
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 1.4e-71 274.6 488 55.3
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 5.4e-71 272.7 488 55.1
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 9.3e-71 271.9 488 55.1
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.2e-70 271.6 485 54.0
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.1e-70 270.8 491 55.2
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 2.1e-70 270.8 476 55.7
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 2.7e-70 270.4 481 55.5
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 2.7e-70 270.4 478 50.8
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 1.3e-69 268.1 485 54.4
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 2.3e-69 267.3 480 48.8
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 3.9e-69 266.5 478 55.2
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 5.1e-69 266.2 480 55.2
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 5.1e-69 266.2 485 55.3
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 1.9e-68 264.2 485 55.1
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 1.9e-68 264.2 482 55.6
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 3.3e-68 263.5 486 53.3
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 4.3e-68 263.1 479 55.9
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 7.4e-68 262.3 478 54.8
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 7.4e-68 262.3 482 55.6
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 1.3e-67 261.5 481 57.4
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 1.6e-67 261.2 475 54.9
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 2.1e-67 260.8 478 54.6
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 2.1e-67 260.8 478 55.0
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 4.8e-67 259.6 475 55.2
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 1.1e-66 258.5 487 56.3
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 1.8e-66 257.7 480 53.3
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 1.8e-66 257.7 485 54.4
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 1.8e-66 257.7 485 54.4
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 2.4e-66 257.3 479 53.7
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 6.9e-66 255.8 486 52.9
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 3.4e-65 253.4 487 53.8
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 3.4e-65 253.4 481 53.6
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.5e-65 253.1 486 53.7
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 4.5e-65 253.1 475 53.7
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 5.8e-65 252.7 478 54.0
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 5.8e-65 252.7 478 54.4
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 9.9e-65 251.9 480 53.3
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 9.9e-65 251.9 486 53.5
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 1.7e-64 251.1 488 53.7
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 2.9e-64 250.4 484 53.1
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 4.9e-64 249.6 484 53.1
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 6.4e-64 249.2 482 45.0
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.9e-63 247.7 503 42.9
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 2.4e-63 247.3 482 34.6
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.2e-62 245.0 461 54.4
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 2.1e-62 244.2 483 50.9
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 2.7e-62 243.8 487 47.6
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 6.0e-62 242.7 482 52.9
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.8e-61 241.1 475 52.0
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.8e-61 241.1 482 45.9
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 3.0e-61 240.4 480 52.7
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 3.0e-61 240.4 486 45.9
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 3.9e-61 240.0 475 52.2
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 5.1e-61 239.6 490 53.5
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 6.7e-61 239.2 474 36.5
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 6.7e-61 239.2 479 47.8
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 8.7e-61 238.8 482 45.9
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.1e-60 238.4 482 45.6
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 1.5e-60 238.0 490 52.7
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 1.9e-60 237.7 490 52.4
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 3.3e-60 236.9 478 53.3
Manes.08G025000 Manihot esculenta HOM05D004768 ORTHO05D005812 3.3e-60 236.9 460 51.1
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 4.3e-60 236.5 485 52.4
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 5.6e-60 236.1 490 52.7
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.1e-58 231.9 495 45.5
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 1.1e-58 231.9 487 46.2
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 2.6e-57 227.3 479 45.7
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 3.4e-57 226.9 481 50.7
Dinv21211 Davidia involucrata HOM05D004768 ORTHO05D005812 1.0e-56 225.3 369 63.4
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 1.2e-54 218.4 484 51.0
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 6.0e-54 216.1 479 44.5
Dinv31684 Davidia involucrata HOM05D004768 ORTHO05D005812 1.8e-53 214.5 369 58.8
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.8e-53 214.5 482 44.4
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 8.7e-53 212.2 489 50.7
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 5.7e-52 209.5 484 49.4
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 8.2e-51 205.7 482 50.6
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 3.8e-48 196.8 478 41.6
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 1.1e-47 195.3 476 44.7
Haze_19607 Corylus avellana HOM05D004768 ORTHO05D005812 5.5e-47 193.0 384 57.3
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 4.6e-46 189.9 481 48.4
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 8.8e-45 185.7 325 36.3
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 1.9e-44 184.5 488 31.1
Aa31LG5G9700 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.8e-43 180.6 454 51.3
PGSC0003DMG400016841 Solanum tuberosum HOM05D004768 ORTHO05D005812 3.1e-42 177.2 365 58.4
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.5e-41 174.9 325 51.1
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.0e-41 174.5 476 43.5
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 3.2e-39 167.2 480 38.5
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 7.9e-38 162.5 490 39.6
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 7.9e-38 162.5 490 39.6
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 7.9e-38 162.5 517 37.1
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 1.8e-37 161.4 490 39.2
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 2.3e-37 161.0 490 39.2
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 7.4e-36 156.0 489 46.2
DCAR_009163 Daucus carota HOM05D004768 ORTHO05D005812 1.3e-35 155.2 204 42.6
Oeu056927.1 Olea europaea HOM05D004768 ORTHO05D005812 3.7e-35 153.7 208 42.3
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 8.2e-35 152.5 153 52.3
Ah.01g002000 Amaranthus hybridus HOM05D000289 ORTHO05D000208 2.6e-33 147.5 387 56.6
TWI53G2067 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 1.7e-32 144.8 207 41.1
Hund03983 Selenicereus undatus HOM05D004768 ORTHO05D005812 3.6e-30 137.1 208 40.9
TAR636G3610 Trochodendron aralioides HOM05D004768 ORTHO05D005812 2.6e-28 131.0 198 39.9
AT4G32990 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 1.4e-26 125.2 390 43.8
SMO239G0020 Selaginella moellendorffii HOM05D004768 ORTHO05D005812 3.1e-26 124.0 492 35.6
Sopen09g004150 Solanum pennellii HOM05D004768 ORTHO05D005812 4.1e-26 123.6 493 34.1
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 7.0e-26 122.9 149 47.7
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 1.2e-25 122.1 335 53.7
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 2.6e-25 120.9 205 35.6
Potri.001G221150 Populus trichocarpa HOM05D004768 ORTHO05D005812 9.4e-23 112.5 115 50.4
Solyc09g009410.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 2.7e-22 110.9 497 33.4
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 8.0e-22 109.4 149 39.6
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 6.7e-21 106.3 144 41.7
Cre08.g374400 Chlamydomonas reinhardtii HOM05D004768 ORTHO05D005812 2.0e-20 104.8 524 33.0
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 1.7e-19 101.7 133 43.6
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 8.2e-19 99.4 312 61.2
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.4e-18 98.6 141 44.0
SHI23990 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-15 89.0 57 66.7
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 8.8e-13 79.3 49 71.4
Oeu009219.1 Olea europaea HOM05D004768 ORTHO05D005812 1.5e-12 78.6 41 80.5
AagrBONN_evm.TU.Sc2ySwM_344.3396 Anthoceros agrestis HOM05D004768 ORTHO05D005812 4.4e-12 77.0 135 36.3
Potri.014G136700 Populus trichocarpa HOM05D004768 ORTHO05D005812 1.3e-11 75.5 46 76.1
SalBow1G7826 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.3e-11 75.5 67 56.7
SalBow3G0715 Salvia bowleyana HOM05D004768 ORTHO05D005812 3.1e-10 70.9 67 53.7
Glyma.19G194908 Glycine max HOM05D004768 ORTHO05D005812 4.1e-10 70.5 35 85.7
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.0e-09 68.2 116 37.9
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 4.5e-09 67.0 51 66.7
DCAR_020750 Daucus carota HOM05D004768 ORTHO05D005812 7.7e-09 66.2 197 26.4
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.7e-08 65.1 46 69.6
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.1e-07 62.4 145 34.5
arahy.Tifrunner.gnm1.ann1.14B96B Arachis hypogaea HOM05D004768 ORTHO05D005812 1.1e-07 62.4 47 61.7
CBR_g39931 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-06 58.5 49 59.2


User provided reference genes

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