Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07336 Vaccinium macrocarpon HOM05D001312 ORTHO05D008018 0.0e+00 1238.4 614 100.0
CSS0027895 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 2.6e-219 765.8 444 84.9
CSS0009438 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D008018 7.5e-219 764.2 444 84.9
Rhsim03G0083100 Rhododendron simsii HOM05D001312 ORTHO05D008018 9.8e-219 763.8 413 92.0
Actinidia39872 Actinidia chinensis HOM05D001312 ORTHO05D008018 5.4e-209 731.5 446 82.5
TAR633G1314 Trochodendron aralioides HOM05D001312 ORTHO05D001832 3.9e-191 672.2 475 70.5
Thecc.05G079000 Theobroma cacao HOM05D001312 ORTHO05D008018 1.2e-184 650.6 439 72.0
RcHm_v2.0_Chr3g0471781 Rosa chinensis HOM05D001312 ORTHO05D008018 5.1e-183 645.2 442 71.0
CiPaw.10G004200 Carya illinoinensis HOM05D001312 ORTHO05D008018 4.3e-182 642.1 440 70.9
COL.COLO4_22294 Corchorus olitorius HOM05D001312 ORTHO05D008018 2.1e-181 639.8 441 71.7
FvH4_6g17520 Fragaria vesca HOM05D001312 ORTHO05D008018 1.1e-180 637.5 442 70.6
Gorai.009G409200 Gossypium raimondii HOM05D001312 ORTHO05D008018 1.1e-180 637.5 435 71.0
Gohir.D04G105500 Gossypium hirsutum HOM05D001312 ORTHO05D008018 4.0e-180 635.6 435 71.0
MD14G1093900 Malus domestica HOM05D001312 ORTHO05D008018 5.3e-180 635.2 443 70.0
TWI53G1380 Tripterygium wilfordii HOM05D001312 ORTHO05D008018 5.3e-180 635.2 438 70.1
Potri.016G095900 Populus trichocarpa HOM05D001312 ORTHO05D008018 1.5e-179 633.6 437 69.8
Aqoxy1G00967 Aquilegia oxysepala HOM05D001312 ORTHO05D008018 2.0e-179 633.3 442 69.9
Lj3A1005G38 Lonicera japonica HOM05D001312 ORTHO05D008018 5.8e-179 631.7 488 65.0
FAN05G3053 Fragaria x ananassa HOM05D001312 ORTHO05D008018 1.3e-178 630.6 451 69.0
FAN05G0775 Fragaria x ananassa HOM05D001312 ORTHO05D008018 3.8e-178 629.0 451 68.7
MSTRG.5801 Avicennia marina HOM05D001312 ORTHO05D008018 7.1e-177 624.8 439 68.3
CANSAT80G2114 Cannabis sativa HOM05D001312 ORTHO05D008018 2.1e-176 623.2 443 69.8
PGSC0003DMG400028176 Solanum tuberosum HOM05D001312 ORTHO05D008018 3.5e-176 622.5 442 68.3
Nitab4.5_0004490g0050 Nicotiana tabacum HOM05D001312 ORTHO05D008018 4.6e-176 622.1 471 66.0
FAN14G3191 Fragaria x ananassa HOM05D001312 ORTHO05D008018 7.9e-176 621.3 468 66.2
QL07p040881 Quercus lobata HOM05D001312 ORTHO05D008018 6.7e-175 618.2 509 62.5
Migut.J00495 Erythranthe guttata HOM05D001312 ORTHO05D008018 1.1e-174 617.5 439 69.2
Cc06_g05050 Coffea canephora HOM05D001312 ORTHO05D008018 2.5e-174 616.3 441 68.7
Phvul.007G224100 Phaseolus vulgaris HOM05D001312 ORTHO05D008018 2.0e-171 606.7 436 68.6
arahy.Tifrunner.gnm1.ann1.42C0B0 Arachis hypogaea HOM05D001312 ORTHO05D008018 7.6e-171 604.7 436 67.7
arahy.Tifrunner.gnm1.ann1.C1UQYX Arachis hypogaea HOM05D001312 ORTHO05D008018 7.6e-171 604.7 436 67.7
Lj5g0006635 Lotus japonicus HOM05D001312 ORTHO05D008018 4.9e-170 602.1 438 68.0
Cpa.g.sc5.99 Carica papaya HOM05D001312 ORTHO05D008018 6.4e-170 601.7 435 68.3
FAN09G2766 Fragaria x ananassa HOM05D001312 ORTHO05D008018 6.4e-170 601.7 468 64.7
CsaV3_6G040350 Cucumis sativus L. HOM05D001312 ORTHO05D008018 1.1e-169 600.9 443 65.5
TPR.G5684 Trifolium pratense HOM05D001312 ORTHO05D008018 2.5e-169 599.7 436 66.1
Sed0012062 Sechium edule HOM05D001312 ORTHO05D008018 4.2e-169 599.0 443 66.1
GSVIVG01033751001 Vitis vinifera HOM05D001312 ORTHO05D008018 7.1e-169 598.2 385 75.6
ClCG04G009690 Citrullus lanatus HOM05D001312 ORTHO05D008018 9.3e-169 597.8 442 66.5
Glyma.10G065300 Glycine max HOM05D001312 ORTHO05D008018 1.6e-168 597.0 434 67.1
VMungo0720G0477 Vigna mungo HOM05D001312 ORTHO05D008018 3.5e-168 595.9 439 67.4
ECA248G1880 Erigeron canadensis HOM05D001312 ORTHO05D008018 4.6e-168 595.5 438 66.4
Dinv35859 Davidia involucrata HOM05D001312 ORTHO05D008018 2.3e-167 593.2 362 79.6
BcaC06g32083 Brassica carinata HOM05D001312 ORTHO05D008018 3.0e-167 592.8 436 65.1
Thhalv10013569m.g Eutrema salsugineum HOM05D001312 ORTHO05D008018 1.5e-166 590.5 436 65.8
Medtr1g061560 Medicago truncatula HOM05D001312 ORTHO05D008018 2.5e-166 589.7 434 65.9
Lsat_1_v5_gn_1_50640 Lactuca sativa HOM05D001312 ORTHO05D008018 3.3e-166 589.3 434 66.6
FAN02G1263 Fragaria x ananassa HOM05D001312 ORTHO05D008018 5.6e-166 588.6 442 66.5
SalBow3G2703 Salvia bowleyana HOM05D001312 ORTHO05D008018 9.6e-166 587.8 471 63.1
Eucgr.A01566 Eucalyptus grandis HOM05D001312 ORTHO05D008018 1.3e-165 587.4 435 66.2
Solyc10g083710.2 Solanum lycopersicum HOM05D001312 ORTHO05D008018 4.8e-165 585.5 442 65.2
A10p32330 Brassica napus HOM05D001312 ORTHO05D008018 8.2e-165 584.7 439 64.9
BraA10t45274Z Brassica rapa HOM05D001312 ORTHO05D008018 8.2e-165 584.7 439 64.9
HanXRQChr01g0028401 Helianthus annuus HOM05D001312 ORTHO05D008018 2.4e-164 583.2 437 65.9
Sp6g38960 Schrenkiella parvula HOM05D001312 ORTHO05D008018 4.0e-164 582.4 437 64.3
Atru.BG.216.p Acer truncatum HOM05D001312 ORTHO05D008018 1.2e-163 580.9 430 68.8
Oeu039841.2 Olea europaea HOM05D001312 ORTHO05D008018 1.2e-163 580.9 568 55.6
C09p73160 Brassica napus HOM05D001312 ORTHO05D008018 1.5e-163 580.5 439 64.7
AT5G03770 Arabidopsis thaliana HOM05D001312 ORTHO05D008018 5.8e-163 578.6 434 65.7
SGA_v2.0_scaffold40G15429 Striga asiatica HOM05D001312 ORTHO05D008018 2.2e-162 576.6 447 64.9
BolC9t60051H Brassica oleracea HOM05D001312 ORTHO05D008018 2.9e-162 576.2 439 64.5
Sabra16G0101200 Salix brachista HOM05D001312 ORTHO05D008018 8.4e-162 574.7 550 54.7
AL6G13310 Arabidopsis lyrata HOM05D001312 ORTHO05D008018 3.2e-161 572.8 456 63.2
Carub.0006s0268 Capsella rubella HOM05D001312 ORTHO05D008018 2.7e-160 569.7 436 64.0
PSO063G2793 Papaver somniferum HOM05D001312 ORTHO05D008018 2.7e-160 569.7 471 58.0
Nn6g35083 Nelumbo nucifera HOM05D001312 ORTHO05D008018 3.5e-160 569.3 441 65.1
Manes.08G018900 Manihot esculenta HOM05D001312 ORTHO05D008018 2.3e-159 566.6 384 72.9
Gohir.A04G066728 Gossypium hirsutum HOM05D001312 ORTHO05D008018 3.9e-159 565.8 382 72.3
PSO339G3022 Papaver somniferum HOM05D001312 ORTHO05D008018 5.7e-158 562.0 432 62.0
MELO3C024510.2 Cucumis melo HOM05D001312 ORTHO05D008018 3.7e-157 559.3 389 69.4
THA.LOC104816378 Tarenaya hassleriana HOM05D001312 ORTHO05D008018 4.8e-157 558.9 437 63.2
Sc02g0001220 Simmondsia chinensis HOM05D001312 ORTHO05D008018 1.1e-156 557.8 387 69.3
Haze_19515 Corylus avellana HOM05D001312 ORTHO05D008018 2.0e-155 553.5 440 63.4
Nitab4.5_0000132g0320 Nicotiana tabacum HOM05D001312 ORTHO05D008018 6.5e-154 548.5 470 60.6
EL10Ac7g16768 Beta vulgaris HOM05D001312 ORTHO05D008018 1.4e-153 547.4 444 62.2
Ca_11617_v3 Cicer arietinum L. HOM05D001312 ORTHO05D008018 1.2e-147 527.7 412 64.1
CiPaw.09G007400 Carya illinoinensis HOM05D001312 ORTHO05D008018 1.0e-143 514.6 370 69.7
ATR0820G168 Amborella trichopoda HOM05D001312 ORTHO05D008018 1.7e-141 507.3 439 58.3
SEGI_32755 Sequoiadendron giganteum HOM05D001312 ORTHO05D008018 1.8e-140 503.8 452 57.1
Peaxi162Scf00110g01214 Petunia axillaris HOM05D001312 ORTHO05D008018 2.2e-138 496.9 458 58.5
Atru.chr8.1664 Acer truncatum HOM05D001312 ORTHO05D008018 3.2e-137 493.0 343 72.0
Zm00001eb147410 Zea mays HOM05D001312 ORTHO05D008018 8.8e-135 485.0 438 54.8
Hma1.2p1_0651F.1_g195720 Hydrangea macrophylla HOM05D001312 ORTHO05D008018 4.5e-131 472.6 322 72.7
unitig_744.g24689 Utricularia gibba HOM05D001312 ORTHO05D008018 8.5e-130 468.4 433 55.9
Aa31LG1G21490 Aethionema arabicum HOM05D001312 ORTHO05D008018 1.5e-129 467.6 405 59.3
Prupe.7G120300 Prunus persica HOM05D001312 ORTHO05D008018 1.6e-128 464.2 322 70.5
Ah.15g091190 Amaranthus hybridus HOM05D001312 ORTHO05D008018 1.2e-123 448.0 392 59.4
SMO364G0357 Selaginella moellendorffii HOM05D001312 ORTHO05D008018 1.6e-115 421.0 427 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3661 Anthoceros agrestis HOM05D001312 ORTHO05D008018 1.0e-114 418.3 434 49.5
MBI01_g23067_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 7.2e-113 412.1 287 67.6
Pp3c21_8090 Physcomitrium patens HOM05D001312 ORTHO05D008018 6.1e-112 409.1 430 48.4
CARHR209530 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.6e-110 403.7 290 66.9
DCAR_015029 Daucus carota HOM05D001312 ORTHO05D008018 4.4e-110 402.9 313 62.9
Psat6g076240 Pisum sativum HOM05D001312 ORTHO05D008018 3.2e-108 396.7 279 71.3
Mapoly0002s0209 Marchantia polymorpha HOM05D001312 ORTHO05D008018 2.3e-106 390.6 431 46.9
Ciclev10032390m.g Citrus clementina HOM05D001312 ORTHO05D008018 6.4e-101 372.5 251 72.5
CBR_g874 Chara braunii HOM05D001312 ORTHO05D008018 5.4e-92 342.8 361 50.1
Hund20444 Selenicereus undatus HOM05D001312 ORTHO05D008018 7.1e-84 315.8 288 56.2
Os01g0857300 Oryza sativa ssp. japonica HOM05D001312 ORTHO05D008018 5.3e-63 246.5 194 62.4
Sopen10g033180 Solanum pennellii HOM05D001312 ORTHO05D008018 1.2e-62 245.4 183 66.7
Lalb_Chr21g0315421 Lupinus albus HOM05D001312 ORTHO05D008018 4.8e-56 223.4 155 70.3
AUR62037894 Chenopodium quinoa HOM05D001312 ORTHO05D008018 1.2e-54 218.8 286 44.8
HPP92_006796 Vanilla planifolia HOM05D001312 ORTHO05D008018 4.2e-52 210.3 331 39.0
Lalb_Chr21g0315431 Lupinus albus HOM05D001312 ORTHO05D008018 2.8e-48 197.6 155 64.5
AUR62033601 Chenopodium quinoa HOM05D001312 ORTHO05D008018 3.7e-48 197.2 307 40.1
Ciclev10013092m.g Citrus clementina HOM05D001312 ORTHO05D008018 1.1e-44 185.7 132 69.7
MBI01_g48091_MAGBIO Magnolia biondii HOM05D001312 ORTHO05D008018 1.1e-44 185.7 146 65.8
HPP92_006792 Vanilla planifolia HOM05D001312 ORTHO05D008018 1.9e-41 174.9 199 46.7
arahy.Tifrunner.gnm1.ann1.IWGZ26 Arachis hypogaea HOM05D001312 ORTHO05D008018 3.7e-40 170.6 147 61.9
Glyma.13G150200 Glycine max HOM05D001312 ORTHO05D008018 1.1e-39 169.1 126 66.7
CARHR208850 Cardamine hirsuta HOM05D001312 ORTHO05D008018 7.7e-38 162.9 114 65.8
DCAR_015030 Daucus carota HOM05D001312 ORTHO05D008018 3.9e-34 150.6 98 71.4
Lalb_Chr21g0315441 Lupinus albus HOM05D001312 ORTHO05D008018 7.4e-33 146.4 93 71.0
CARHR208860 Cardamine hirsuta HOM05D001312 ORTHO05D008018 2.6e-30 137.9 98 71.4
Zm00001eb059120 Zea mays HOM05D000212 ORTHO05D008018 7.7e-30 136.3 100 58.0
Cre13.g583100 Chlamydomonas reinhardtii HOM05D001312 ORTHO05D008018 4.7e-27 127.1 378 28.6
arahy.Tifrunner.gnm1.ann1.UHL2QJ Arachis hypogaea HOM05D000705 ORTHO05D008018 6.3e-16 90.1 157 35.7
VMungo0251G1834 Vigna mungo HOM05D001312 ORTHO05D008018 3.2e-12 77.8 80 50.0
Zm00001eb009840 Zea mays HOM05D001312 ORTHO05D008018 4.2e-12 77.4 63 52.4
Zm00001eb059130 Zea mays HOM05D000212 ORTHO05D002824 4.2e-12 77.4 59 59.3
A03p01370 Brassica napus HOM05D001312 ORTHO05D008018 5.7e-09 67.0 70 44.3
CARHR208870 Cardamine hirsuta HOM05D001312 ORTHO05D008018 6.3e-08 63.5 68 42.6
C03p01710 Brassica napus HOM05D001312 ORTHO05D008018 4.1e-07 60.8 69 40.6
BolC3t12726H Brassica oleracea HOM05D001312 ORTHO05D008018 4.1e-07 60.8 69 40.6
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.2e-06 59.3 39 69.2


User provided reference genes

Program Settings