Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07296 Vaccinium macrocarpon HOM05D000147 ORTHO05D426980 4.0e-281 970.7 465 100.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.0e-18 99.0 301 33.6
Rhsim02G0226500 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.9e-13 80.1 95 38.9
Atru.chr11.1175 Acer truncatum HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Aa31LG8G6540 Aethionema arabicum HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
AL3G33200 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
AT3G19740 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
MSTRG.23131 Avicennia marina HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
CANSAT64G1147 Cannabis sativa HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Carub.0003s1961 Capsella rubella HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
CARHR095260 Cardamine hirsuta HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Cpa.g.sc0.167 Carica papaya HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
CiPaw.06G059800 Carya illinoinensis HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
COL.COLO4_08994 Corchorus olitorius HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Migut.I00007 Erythranthe guttata HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Thhalv10019988m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Lj6C720G7 Lonicera japonica HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Oeu016388.3 Olea europaea HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
PGR142G0037 Punica granatum HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
TWI77G0661 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
TAR628G0689 Trochodendron aralioides HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
HPP92_013075 Vanilla planifolia HOM05D000147 ORTHO05D005311 1.6e-08 65.1 42 69.0
Actinidia04308 Actinidia chinensis HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 66.7
EL10Ac9g22954 Beta vulgaris HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
ClCG09G004590 Citrullus lanatus HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
MELO3C023601.2 Cucumis melo HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
CsaV3_7G030550 Cucumis sativus L. HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
Manes.02G219800 Manihot esculenta HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
Nn5g28890 Nelumbo nucifera HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 66.7
Rhsim09G0074600 Rhododendron simsii HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
Sabra05G0077400 Salix brachista HOM05D000147 ORTHO05D005311 2.1e-08 64.7 36 80.6
Hund08554 Selenicereus undatus HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
Sc10g0006770 Simmondsia chinensis HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
vmacro10897 Vaccinium macrocarpon HOM05D000147 ORTHO05D005311 2.1e-08 64.7 42 69.0
THA.LOC104826507 Tarenaya hassleriana HOM05D000147 ORTHO05D005311 2.8e-08 64.3 42 66.7
TWI74G0983 Tripterygium wilfordii HOM05D000147 ORTHO05D005311 2.8e-08 64.3 36 80.6
ATR0564G231 Amborella trichopoda HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Cfa008733 Carpinus fangiana HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
FvH4_4g36860 Fragaria vesca HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
FAN07G2667 Fragaria x ananassa HOM05D000147 ORTHO05D005311 3.7e-08 63.9 38 73.7
FAN12G4124 Fragaria x ananassa HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
FAN17G2876 Fragaria x ananassa HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
MD13G1006500 Malus domestica HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
MD16G1001500 Malus domestica HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Oeu049345.1 Olea europaea HOM05D000147 ORTHO05D005311 3.7e-08 63.9 85 43.5
Potri.005G093300 Populus trichocarpa HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Potri.007G069800 Populus trichocarpa HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Prupe.1G346700 Prunus persica HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
QL03p044068 Quercus lobata HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
RcHm_v2.0_Chr4g0446611 Rosa chinensis HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Sp3g17770 Schrenkiella parvula HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
SGA_v2.0_scaffold90G27912 Striga asiatica HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Thecc.02G160800 Theobroma cacao HOM05D000147 ORTHO05D005311 3.7e-08 63.9 42 66.7
Ah.01g012370 Amaranthus hybridus HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
AUR62017703 Chenopodium quinoa HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Cc11_g00140 Coffea canephora HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Duzib132G0553 Durio zibethinus HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Duzib248G1409 Durio zibethinus HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Gohir.A12G134200 Gossypium hirsutum HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Gohir.D12G137800 Gossypium hirsutum HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Gorai.008G149300 Gossypium raimondii HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
Os02g0749150 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005311 4.8e-08 63.5 42 66.7
CSS0012305 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D005311 6.3e-08 63.2 36 77.8
Eucgr.G02569 Eucalyptus grandis HOM05D000147 ORTHO05D005311 6.3e-08 63.2 36 77.8
MSTRG.11456 Avicennia marina HOM05D000147 ORTHO05D005311 8.2e-08 62.8 42 66.7
ECA246G2622 Erigeron canadensis HOM05D000147 ORTHO05D005311 8.2e-08 62.8 36 77.8
HanXRQChr15g0472181 Helianthus annuus HOM05D000147 ORTHO05D005311 8.2e-08 62.8 36 77.8
Lsat_1_v5_gn_2_97540 Lactuca sativa HOM05D000147 ORTHO05D005311 8.2e-08 62.8 36 77.8
unitig_26.g9622 Utricularia gibba HOM05D000147 ORTHO05D005311 8.2e-08 62.8 42 66.7
GSVIVG01012038001 Vitis vinifera HOM05D000147 ORTHO05D005311 8.2e-08 62.8 42 64.3
Aqoxy6G00466 Aquilegia oxysepala HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 66.7
arahy.Tifrunner.gnm1.ann1.6GN5UX Arachis hypogaea HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
arahy.Tifrunner.gnm1.ann1.7MKI8I Arachis hypogaea HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
AUR62032985 Chenopodium quinoa HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Ca_19029_v3 Cicer arietinum L. HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Ciclev10030948m.g Citrus clementina HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Lj3g0018243 Lotus japonicus HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Lalb_Chr19g0139371 Lupinus albus HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Os06g0225900 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Phvul.011G030700 Phaseolus vulgaris HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Psat7g173240 Pisum sativum HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
TPR.G32339 Trifolium pratense HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
VMungo1127G1912 Vigna mungo HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Zm00001eb194420 Zea mays HOM05D000147 ORTHO05D005311 1.1e-07 62.4 42 64.3
Ah.01g001490 Amaranthus hybridus HOM05D000147 ORTHO05D005311 1.4e-07 62.0 42 66.7
CiPaw.05G168400 Carya illinoinensis HOM05D000147 ORTHO05D005311 1.4e-07 62.0 42 66.7
TAR381G0407 Trochodendron aralioides HOM05D000147 ORTHO05D005311 1.4e-07 62.0 42 66.7
Glyma.11G101600 Glycine max HOM05D000147 ORTHO05D005311 1.8e-07 61.6 36 75.0
Glyma.12G027500 Glycine max HOM05D000147 ORTHO05D005311 1.8e-07 61.6 36 75.0
A01p34960 Brassica napus HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 64.3
C01p44370 Brassica napus HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 64.3
BolC1t04402H Brassica oleracea HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 64.3
BraA01t03579Z Brassica rapa HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 64.3
CAN.G157.20 Capsicum annuum HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 61.9
Lalb_Chr03g0024801 Lupinus albus HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 61.9
Nitab4.5_0000739g0020 Nicotiana tabacum HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 61.9
PSO170G3341 Papaver somniferum HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 66.7
PSO210G5900 Papaver somniferum HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 66.7
Peaxi162Scf00363g00615 Petunia axillaris HOM05D000147 ORTHO05D005311 2.4e-07 61.2 38 68.4
Sed0001066 Sechium edule HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 64.3
Solyc02g014350.4 Solanum lycopersicum HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 61.9
Sopen02g003380 Solanum pennellii HOM05D000147 ORTHO05D005311 2.4e-07 61.2 42 61.9
vmacro14249 Vaccinium macrocarpon HOM05D000147 ORTHO05D426508 3.1e-07 60.8 37 78.4
Aa31LG10G4010 Aethionema arabicum HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
AL1G57780 Arabidopsis lyrata HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
AT1G50140 Arabidopsis thaliana HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
A08p03310 Brassica napus HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
C03p89500 Brassica napus HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
BolC3t21264H Brassica oleracea HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
BraA08t32364Z Brassica rapa HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
CARHR040190 Cardamine hirsuta HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
Thhalv10011206m.g Eutrema salsugineum HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
Nitab4.5_0008057g0010 Nicotiana tabacum HOM05D000147 ORTHO05D005311 4.1e-07 60.5 36 72.2
PSO541G5327 Papaver somniferum HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 64.3
PSO675G6018 Papaver somniferum HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 64.3
Sp1g37010 Schrenkiella parvula HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 61.9
Sed0010099 Sechium edule HOM05D000147 ORTHO05D005311 4.1e-07 60.5 42 64.3
Carub.0001s3929 Capsella rubella HOM05D000147 ORTHO05D005311 6.9e-07 59.7 36 72.2
HanXRQChr06g0171471 Helianthus annuus HOM05D000147 ORTHO05D005311 6.9e-07 59.7 36 75.0
Medtr4g074920 Medicago truncatula HOM05D000147 ORTHO05D005311 6.9e-07 59.7 42 61.9
SEGI_03549 Sequoiadendron giganteum HOM05D000147 ORTHO05D005311 9.0e-07 59.3 42 61.9
FvH4_5g39268 Fragaria vesca HOM05D000147 ORTHO05D019123 1.2e-06 58.9 40 70.0
CDE04G2917 Ceratophyllum demersum HOM05D000147 ORTHO05D005311 1.5e-06 58.5 42 61.9
FAN23G1228 Fragaria x ananassa HOM05D000147 ORTHO05D005311 1.5e-06 58.5 38 73.7
FAN26G0415 Fragaria x ananassa HOM05D000147 ORTHO05D005311 2.0e-06 58.2 49 61.2
FAN26G1344 Fragaria x ananassa HOM05D000147 ORTHO05D005311 2.0e-06 58.2 38 73.7
SalBow7G4779 Salvia bowleyana HOM05D000147 ORTHO05D001254 2.0e-06 58.2 36 69.4
COL.COLO4_24157 Corchorus olitorius HOM05D007567 ORTHO05D000126 4.5e-06 57.0 84 33.3
SEGI_26149 Sequoiadendron giganteum HOM05D000147 ORTHO05D001254 4.5e-06 57.0 36 69.4
FAN27G3416 Fragaria x ananassa HOM05D000147 ORTHO05D005311 5.9e-06 56.6 38 71.1


User provided reference genes

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