Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 1.1e-292 1009.2 500 100.0
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 9.8e-193 677.2 494 74.1
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 4.7e-179 631.7 493 69.4
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 5.4e-175 618.2 496 67.9
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 1.2e-174 617.1 496 67.9
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 4.7e-171 605.1 493 66.5
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 4.0e-170 602.1 493 67.5
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 1.5e-164 583.6 493 64.7
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 1.4e-162 577.0 493 63.5
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.8e-162 576.6 493 64.3
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 6.9e-162 574.7 493 63.9
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 4.5e-161 572.0 493 62.7
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 7.6e-161 571.2 493 64.3
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 7.6e-161 571.2 492 63.6
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 2.9e-160 569.3 493 63.3
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 1.1e-159 567.4 489 63.4
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.4e-159 567.0 492 63.8
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 3.2e-159 565.8 494 63.2
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 4.6e-158 562.0 494 63.0
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.3e-157 560.5 508 62.6
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 1.8e-157 560.1 493 63.3
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 3.0e-157 559.3 489 62.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 3.0e-157 559.3 492 62.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 1.5e-156 557.0 490 63.5
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.3e-156 555.8 494 62.6
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 5.6e-156 555.1 493 61.9
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 9.6e-156 554.3 500 61.8
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.3e-155 553.9 490 62.0
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.3e-155 553.9 489 62.4
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.3e-155 553.9 490 62.0
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.6e-155 553.5 489 62.6
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 6.2e-155 551.6 489 62.4
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 8.1e-155 551.2 494 61.1
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 1.4e-154 550.4 493 62.9
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 1.4e-154 550.4 491 61.5
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 1.4e-154 550.4 494 61.1
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.8e-154 550.1 500 61.6
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 3.1e-154 549.3 490 61.6
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 6.9e-154 548.1 489 62.2
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.2e-153 547.4 493 61.1
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 1.2e-153 547.4 493 61.9
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.2e-153 547.4 493 61.9
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.2e-153 547.4 493 61.9
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 2.6e-153 546.2 491 61.7
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 4.5e-153 545.4 493 60.6
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 5.8e-153 545.0 490 61.6
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 7.6e-153 544.7 490 61.2
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 1.0e-152 544.3 513 60.0
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 1.7e-152 543.5 490 61.0
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 3.8e-152 542.3 492 59.1
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 3.8e-152 542.3 492 60.4
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 3.8e-152 542.3 492 60.6
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 3.8e-152 542.3 493 60.6
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 6.4e-152 541.6 493 62.5
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 1.1e-151 540.8 492 60.4
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.1e-151 540.8 494 60.3
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 1.4e-151 540.4 494 60.5
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 1.4e-151 540.4 494 60.9
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 2.5e-151 539.7 492 62.0
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 5.5e-151 538.5 492 60.2
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 5.5e-151 538.5 494 61.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 5.5e-151 538.5 493 60.6
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 1.6e-150 537.0 493 60.0
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 3.5e-150 535.8 492 59.6
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 6.0e-150 535.0 492 60.6
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 1.0e-149 534.3 492 60.2
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 1.0e-149 534.3 500 60.0
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 1.8e-149 533.5 493 59.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 5.1e-149 531.9 492 59.8
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 5.1e-149 531.9 490 60.4
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 1.5e-148 530.4 487 61.0
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.5e-148 530.4 492 60.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 1.5e-148 530.4 492 60.4
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 1.9e-148 530.0 492 59.6
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 1.9e-148 530.0 490 60.6
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 1.9e-148 530.0 498 58.8
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.5e-148 529.6 492 59.8
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 3.3e-148 529.3 490 60.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 3.3e-148 529.3 493 60.0
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 5.7e-148 528.5 492 59.6
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 9.6e-148 527.7 492 59.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 9.6e-148 527.7 492 59.3
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 9.6e-148 527.7 489 60.9
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 9.6e-148 527.7 490 60.4
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 9.6e-148 527.7 491 60.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 9.6e-148 527.7 508 59.6
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 1.3e-147 527.3 492 59.8
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 1.3e-147 527.3 492 60.2
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 1.6e-147 526.9 492 58.9
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 1.6e-147 526.9 492 58.9
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 2.1e-147 526.6 491 59.3
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 3.7e-147 525.8 493 60.2
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 4.8e-147 525.4 492 59.1
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 4.8e-147 525.4 492 59.6
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 6.2e-147 525.0 493 59.4
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 1.4e-146 523.9 491 59.9
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 4.0e-146 522.3 493 58.8
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 4.0e-146 522.3 492 58.5
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 4.0e-146 522.3 492 58.5
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 6.9e-146 521.5 493 59.4
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 1.2e-145 520.8 492 58.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 5.8e-145 518.5 493 58.8
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 4.2e-143 512.3 494 58.3
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 5.1e-141 505.4 504 57.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 9.7e-140 501.1 489 58.3
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 1.3e-139 500.7 443 62.5
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 4.1e-138 495.7 463 59.6
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 9.0e-138 494.6 492 57.5
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 2.6e-137 493.0 493 57.4
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 2.3e-133 479.9 493 57.2
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 3.9e-133 479.2 484 56.2
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 1.9e-127 460.3 489 54.6
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.0e-125 454.5 420 58.6
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.0e-125 453.0 493 52.7
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 2.5e-119 433.3 494 51.6
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 6.7e-117 425.2 278 76.3
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.4e-116 421.8 402 59.2
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.4e-116 421.8 402 59.2
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 1.4e-114 417.5 510 48.0
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 4.2e-111 406.0 501 48.1
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 4.7e-102 375.9 499 49.1
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 1.4e-98 364.4 490 44.5
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 3.1e-98 363.2 492 43.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 2.3e-96 357.1 223 79.8
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 2.9e-96 356.7 546 42.9
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.6e-96 355.1 498 44.6
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 2.7e-89 333.6 215 76.3
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 4.6e-89 332.8 333 58.0
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 2.6e-84 317.0 337 55.8
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 2.5e-79 300.4 367 46.9
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.2e-73 281.6 490 39.0
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-68 264.6 334 49.7
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 1.1e-66 258.5 306 51.6
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.5e-65 253.4 157 77.7
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 2.9e-59 233.8 156 72.4
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 1.3e-56 224.9 160 69.4
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 4.8e-54 216.5 154 67.5
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 5.3e-53 213.0 153 68.0
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 2.6e-52 210.7 146 70.5
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 2.9e-51 207.2 130 79.2
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.1e-45 188.7 267 46.8
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.8e-43 180.3 264 44.3
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 2.9e-35 154.1 114 74.6
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 1.3e-32 145.2 133 61.7
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 1.6e-30 138.3 72 95.8
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 5.3e-29 133.3 547 25.8
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 6.1e-25 119.8 105 62.9
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.0e-24 119.0 252 37.3
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.0e-20 104.8 84 70.2
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 3.6e-17 94.0 76 69.7
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 2.3e-16 91.3 78 67.9
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 8.2e-14 82.8 61 70.5
AL4G18520 Arabidopsis lyrata HOM05D003414 ORTHO05D003913 3.0e-08 64.3 35 82.9
AL4G19510 Arabidopsis lyrata HOM05D002764 ORTHO05D002960 3.0e-08 64.3 35 82.9
AL5G23210 Arabidopsis lyrata HOM05D063572 ORTHO05D002960 3.0e-08 64.3 35 82.9
Rhsim01G0135300 Rhododendron simsii HOM05D000781 ORTHO05D000643 5.7e-07 60.1 48 70.8


User provided reference genes

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