Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 4.2e-229 797.7 421 100.0
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.0e-81 308.1 215 79.1
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 8.6e-73 278.5 224 68.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 2.5e-72 276.9 223 68.2
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 5.2e-70 269.2 223 66.4
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 1.5e-69 267.7 223 65.9
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 8.3e-68 261.9 224 63.4
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 9.2e-67 258.5 220 65.5
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 8.6e-65 251.9 223 64.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.5e-64 251.1 223 59.6
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 4.3e-64 249.6 227 59.0
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 9.5e-64 248.4 224 61.2
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 6.2e-63 245.7 217 59.9
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.1e-62 245.0 220 60.9
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 1.1e-62 245.0 222 61.3
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 1.4e-62 244.6 227 60.4
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 1.4e-62 244.6 223 61.4
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 1.8e-62 244.2 228 60.5
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 1.8e-62 244.2 223 60.5
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 1.8e-62 244.2 239 58.6
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 2.3e-62 243.8 223 61.4
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 3.1e-62 243.4 215 60.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.2e-62 242.7 228 60.1
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.2e-62 242.7 228 60.1
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 5.2e-62 242.7 228 60.1
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 6.8e-62 242.3 224 60.3
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 1.2e-61 241.5 221 58.8
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 3.4e-61 240.0 276 52.5
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 3.4e-61 240.0 223 58.7
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 3.4e-61 240.0 223 60.1
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 3.4e-61 240.0 164 72.6
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 5.8e-61 239.2 204 63.7
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 9.8e-61 238.4 253 53.0
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 9.8e-61 238.4 211 59.7
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 9.8e-61 238.4 213 60.1
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 1.3e-60 238.0 226 56.6
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 1.3e-60 238.0 224 58.5
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 1.3e-60 238.0 213 59.2
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 1.7e-60 237.7 218 59.6
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 1.7e-60 237.7 220 60.5
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 1.7e-60 237.7 253 53.0
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 2.2e-60 237.3 221 57.5
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 2.2e-60 237.3 222 57.2
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 3.7e-60 236.5 231 57.1
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 6.4e-60 235.7 231 54.5
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 1.1e-59 235.0 212 59.0
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.4e-59 234.6 217 57.1
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 1.4e-59 234.6 213 60.1
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 1.9e-59 234.2 212 60.4
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 1.9e-59 234.2 224 56.7
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 2.4e-59 233.8 202 59.9
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 7.0e-59 232.3 214 56.1
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 9.2e-59 231.9 158 72.8
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 1.6e-58 231.1 222 55.0
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.1e-58 230.7 222 58.6
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.1e-58 230.7 222 58.1
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 2.1e-58 230.7 222 58.1
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 2.7e-58 230.3 223 57.4
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 6.0e-58 229.2 226 57.5
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 6.0e-58 229.2 214 57.5
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 7.8e-58 228.8 164 68.3
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 7.8e-58 228.8 223 55.6
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 7.8e-58 228.8 220 56.4
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 1.3e-57 228.0 219 56.6
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 1.3e-57 228.0 219 56.6
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 2.3e-57 227.3 223 56.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 2.3e-57 227.3 214 57.5
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 3.0e-57 226.9 193 62.7
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 3.9e-57 226.5 226 57.1
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 3.3e-56 223.4 155 70.3
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 3.3e-56 223.4 164 68.3
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 5.6e-56 222.6 162 67.9
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 5.6e-56 222.6 206 55.8
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 5.6e-56 222.6 212 55.7
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.6e-55 221.1 155 70.3
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 1.6e-55 221.1 219 56.6
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 1.1e-54 218.4 163 65.6
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 3.1e-54 216.9 163 65.0
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 1.5e-53 214.5 218 56.9
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 2.0e-53 214.2 180 63.3
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 2.6e-53 213.8 217 54.8
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 3.4e-53 213.4 164 64.6
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 3.4e-53 213.4 156 66.0
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 4.4e-53 213.0 195 61.5
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 4.9e-52 209.5 220 52.7
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 8.3e-52 208.8 206 54.9
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 8.3e-52 208.8 206 54.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 1.1e-51 208.4 222 52.3
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 7.1e-51 205.7 223 53.8
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 1.2e-50 204.9 219 51.1
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 1.2e-50 204.9 167 62.3
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 4.6e-50 203.0 178 57.3
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 6.0e-50 202.6 162 60.5
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 7.8e-50 202.2 224 50.9
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 2.3e-49 200.7 168 60.1
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 3.0e-49 200.3 224 48.2
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.6e-49 199.1 168 59.5
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.5e-48 198.0 168 59.5
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 1.9e-48 197.6 211 50.7
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.5e-48 197.2 212 51.4
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 4.3e-48 196.4 203 51.2
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 4.3e-48 196.4 164 59.8
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 5.6e-48 196.1 168 58.3
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 5.6e-48 196.1 168 58.3
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 5.6e-48 196.1 162 61.7
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 7.3e-48 195.7 168 58.9
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 9.5e-48 195.3 201 52.2
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.1e-47 194.1 210 51.0
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 2.1e-47 194.1 164 59.1
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.2e-47 192.6 173 56.6
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 1.8e-46 191.0 201 53.2
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 2.4e-46 190.7 165 57.0
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 2.0e-45 187.6 164 56.7
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 7.6e-45 185.7 168 54.8
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 9.9e-45 185.3 224 50.0
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 2.9e-44 183.7 182 54.9
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 3.8e-44 183.3 203 49.8
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 3.8e-44 183.3 203 49.8
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 6.4e-44 182.6 203 49.8
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 6.4e-44 182.6 203 49.8
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 2.4e-43 180.6 182 53.3
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 2.4e-43 180.6 164 55.5
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 3.2e-43 180.3 166 52.4
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 7.1e-43 179.1 182 52.2
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 1.6e-42 177.9 182 51.6
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 1.1e-40 171.8 182 50.5
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 1.2e-39 168.3 265 44.2
vmacro12731 Vaccinium macrocarpon HOM05D002015 ORTHO05D002395 9.6e-32 142.1 126 65.1
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 3.1e-30 137.1 180 41.7
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 2.1e-26 124.4 202 36.6
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 7.9e-26 122.5 174 37.9
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 8.7e-25 119.0 174 39.1
vmacro17834 Vaccinium macrocarpon HOM05D000412 ORTHO05D002774 3.0e-17 94.0 98 55.1
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 2.6e-13 80.9 46 71.7
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 7.6e-13 79.3 175 32.6
vmacro05076 Vaccinium macrocarpon HOM05D002132 ORTHO05D002168 7.1e-11 72.8 109 45.0
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 1.6e-10 71.6 61 62.3
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 7.9e-10 69.3 84 54.8
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 6.7e-09 66.2 135 40.7
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.1e-06 58.9 146 39.0
Rhsim10G0037400 Rhododendron simsii HOM05D000695 ORTHO05D339567 4.1e-06 57.0 69 46.4
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 9.0e-06 55.8 63 41.3


User provided reference genes

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