Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1102.0 556 100.0
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 4.3e-165 585.5 665 56.4
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 4.8e-140 502.3 664 49.1
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 3.8e-121 439.5 666 44.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 8.6e-121 438.3 664 44.3
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.2e-120 436.4 666 44.4
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 9.5e-120 434.9 664 43.7
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 2.2e-116 423.7 672 42.6
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.4e-115 421.0 666 42.9
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 1.4e-115 421.0 666 42.9
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 3.1e-115 419.9 666 42.9
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 4.1e-115 419.5 664 42.5
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.7e-114 416.8 663 43.4
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.7e-114 416.8 664 44.0
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 3.5e-114 416.4 665 43.2
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 4.5e-114 416.0 666 42.6
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 5.9e-114 415.6 664 42.6
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 7.8e-114 415.2 663 42.7
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 1.3e-113 414.5 664 42.0
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 2.3e-113 413.7 664 42.8
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 3.8e-113 412.9 664 42.5
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 5.0e-113 412.5 666 42.5
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 8.6e-113 411.8 666 42.3
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 7.3e-112 408.7 664 42.6
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 7.3e-112 408.7 661 42.2
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 7.3e-112 408.7 664 41.7
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 6.1e-111 405.6 663 41.3
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.0e-110 404.8 666 42.0
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 1.8e-110 404.1 664 40.8
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 1.8e-110 404.1 664 40.8
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 2.3e-110 403.7 664 42.2
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 8.9e-110 401.7 663 41.3
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 1.5e-109 401.0 662 41.4
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 2.6e-109 400.2 661 41.1
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 3.4e-109 399.8 663 41.3
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 3.4e-109 399.8 664 41.7
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 4.4e-109 399.4 662 42.0
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 5.7e-109 399.1 663 41.2
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.5e-109 398.7 666 41.3
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 7.5e-109 398.7 664 41.4
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 7.5e-109 398.7 664 41.4
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 9.8e-109 398.3 664 41.0
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 1.7e-108 397.5 664 41.7
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 3.7e-108 396.4 663 41.2
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 1.4e-107 394.4 663 42.1
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 1.4e-107 394.4 663 40.7
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 3.2e-107 393.3 664 40.5
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 4.1e-107 392.9 663 40.6
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 5.4e-107 392.5 632 43.0
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 5.4e-107 392.5 664 41.6
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 7.0e-107 392.1 664 40.5
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 9.2e-107 391.7 664 40.5
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 2.7e-106 390.2 664 40.8
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 2.7e-106 390.2 664 41.4
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 1.3e-105 387.9 664 40.5
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 1.3e-105 387.9 664 40.5
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.7e-105 387.5 663 40.9
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 2.3e-105 387.1 693 39.5
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 2.3e-105 387.1 664 41.1
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 3.0e-105 386.7 662 40.0
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 3.9e-105 386.3 664 40.2
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 3.9e-105 386.3 663 40.7
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 1.9e-104 384.0 664 40.1
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 2.5e-104 383.6 663 40.4
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 5.6e-104 382.5 663 39.5
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 5.6e-104 382.5 663 41.9
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 5.6e-104 382.5 664 41.9
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 2.1e-103 380.6 663 39.5
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 4.7e-103 379.4 663 40.4
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 4.7e-103 379.4 663 40.6
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 2.3e-102 377.1 661 39.2
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 3.1e-102 376.7 663 40.1
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 3.1e-102 376.7 663 40.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 4.0e-102 376.3 664 38.7
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 6.8e-102 375.6 662 38.8
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 1.5e-101 374.4 740 37.4
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 2.0e-101 374.0 663 39.5
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 2.6e-101 373.6 662 39.1
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 3.4e-101 373.2 664 38.6
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 4.4e-101 372.9 663 40.0
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 7.5e-101 372.1 670 38.7
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 7.5e-101 372.1 667 39.3
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 9.8e-101 371.7 663 38.3
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.7e-100 370.9 663 38.5
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 3.7e-100 369.8 663 39.5
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 3.7e-100 369.8 667 39.1
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 4.9e-100 369.4 663 39.1
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 4.9e-100 369.4 663 39.1
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 4.9e-100 369.4 659 39.8
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 8.3e-100 368.6 664 38.9
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 1.1e-99 368.2 665 38.6
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 1.1e-99 368.2 665 38.6
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 1.4e-99 367.9 662 38.7
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 3.2e-99 366.7 667 38.8
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 4.1e-99 366.3 656 38.7
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 7.0e-99 365.5 667 38.7
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 7.0e-99 365.5 667 38.4
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 9.2e-99 365.2 667 38.4
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 9.2e-99 365.2 667 38.8
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 9.2e-99 365.2 664 39.3
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 1.6e-98 364.4 667 38.7
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 1.7e-97 360.9 663 38.3
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 5.0e-97 359.4 664 37.2
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 5.0e-97 359.4 667 38.8
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 6.6e-97 359.0 664 38.9
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 8.6e-97 358.6 434 49.8
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 1.1e-96 358.2 472 47.2
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 1.5e-96 357.8 635 39.4
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 2.5e-96 357.1 471 48.6
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 5.6e-96 355.9 667 37.9
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 5.6e-96 355.9 664 38.7
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 5.6e-96 355.9 661 38.9
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 2.1e-95 354.0 667 38.2
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 4.0e-94 349.7 681 36.4
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 4.0e-94 349.7 681 36.4
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 6.8e-94 349.0 420 51.2
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 6.8e-94 349.0 663 37.7
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 2.6e-93 347.1 667 37.8
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 2.6e-93 347.1 472 46.2
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 1.0e-89 335.1 472 45.1
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 1.0e-89 335.1 668 35.0
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.9e-89 333.2 472 43.0
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 2.1e-87 327.4 666 36.3
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 4.7e-87 326.2 691 36.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 2.9e-84 317.0 472 42.4
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 8.4e-84 315.5 667 34.6
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 3.3e-80 303.5 451 43.5
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 6.9e-70 269.2 598 34.9
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.4e-69 266.9 450 38.9
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 4.5e-69 266.5 398 45.2
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 1.6e-66 258.1 361 46.8
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.6e-63 248.1 475 36.0
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 3.7e-63 246.9 369 42.8
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 6.9e-62 242.7 474 36.1
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 8.7e-57 225.7 461 34.3
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 5.6e-56 223.0 475 34.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.6e-53 214.2 223 57.4
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 8.4e-52 209.1 424 39.4
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 6.1e-34 149.8 241 41.5
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 1.6e-26 125.2 176 46.0
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-26 124.4 335 28.7
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 5.2e-25 120.2 176 43.2
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.6e-24 117.9 99 63.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 1.3e-23 115.5 219 37.4
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 1.2e-21 109.0 103 59.2
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.3e-20 105.5 96 57.3
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 2.6e-16 91.3 249 31.3
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 8.2e-15 86.3 95 51.6
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 3.5e-13 80.9 99 49.5
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 1.7e-12 78.6 138 34.1
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 2.2e-12 78.2 51 72.5
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 1.5e-11 75.5 584 24.3
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.5e-11 74.7 48 70.8
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 7.5e-08 63.2 102 44.1
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 1.3e-07 62.4 114 34.2
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 2.2e-07 61.6 64 48.4
vmacro15747 Vaccinium macrocarpon HOM05D006716 ORTHO05D008396 8.3e-07 59.7 50 52.0


User provided reference genes

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