Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro07053 Vaccinium macrocarpon HOM05D000023 ORTHO05D016258 6.7e-37 156.8 75 100.0
Rhsim09G0005600 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.7e-30 134.8 75 82.7
Dinv26038 Davidia involucrata HOM05D039906 ORTHO05D016258 8.2e-27 123.2 68 80.9
CSS0035590 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.0e-25 118.6 64 81.2
CSS0039054 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.0e-25 118.6 64 81.2
GSVIVG01016503001 Vitis vinifera HOM05D000023 ORTHO05D000014 8.0e-22 106.7 73 67.1
Hma1.2p1_0998F.1_g246050 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 4.4e-20 100.9 72 65.3
MSTRG.8267 Avicennia marina HOM05D000023 ORTHO05D000014 5.7e-20 100.5 68 67.6
Migut.E00556 Erythranthe guttata HOM05D000023 ORTHO05D000014 8.2e-19 96.7 67 65.7
Hma1.2p1_0998F.1_g246040 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 1.0e-16 89.7 72 59.7
SGA_v2.0_scaffold221G42694 Striga asiatica HOM05D000023 ORTHO05D000014 1.7e-16 89.0 76 59.2
HanXRQChr10g0312811 Helianthus annuus HOM05D000023 ORTHO05D000014 2.7e-14 81.6 64 57.8
ECA232G1165 Erigeron canadensis HOM05D000023 ORTHO05D000014 3.6e-14 81.3 64 57.8
QL04p061506 Quercus lobata HOM05D000023 ORTHO05D000014 1.4e-13 79.3 61 60.7
Sabra10G0155000 Salix brachista HOM05D000023 ORTHO05D000014 1.4e-13 79.3 66 53.0
MD01G1137200 Malus domestica HOM05D000023 ORTHO05D000014 1.8e-13 79.0 70 55.7
FvH4_7g22891 Fragaria vesca HOM05D000023 ORTHO05D000014 2.3e-13 78.6 70 55.7
RcHm_v2.0_Chr1g0368051 Rosa chinensis HOM05D000023 ORTHO05D000014 2.3e-13 78.6 70 54.3
Haze_17099 Corylus avellana HOM05D000023 ORTHO05D000014 4.0e-13 77.8 70 52.9
Duzib128G1974 Durio zibethinus HOM05D000023 ORTHO05D000014 1.5e-12 75.9 71 54.9
Peaxi162Scf01316g00021 Petunia axillaris HOM05D000023 ORTHO05D000014 1.5e-12 75.9 70 51.4
Lj6g0014360 Lotus japonicus HOM05D000023 ORTHO05D000014 2.6e-12 75.1 70 52.9
Lsat_1_v5_gn_2_118801 Lactuca sativa HOM05D000023 ORTHO05D000014 3.4e-12 74.7 56 64.3
QL08p060650 Quercus lobata HOM05D000023 ORTHO05D000014 4.4e-12 74.3 63 52.4
COL.COLO4_06509 Corchorus olitorius HOM05D000023 ORTHO05D016258 5.7e-12 73.9 61 55.7
Lj8C81T8 Lonicera japonica HOM05D000023 ORTHO05D000014 5.7e-12 73.9 66 51.5
PGR142G4468 Punica granatum HOM05D000023 ORTHO05D000014 5.7e-12 73.9 70 52.9
Lj4g0024756 Lotus japonicus HOM05D000023 ORTHO05D000014 7.5e-12 73.6 76 48.7
Cc03_g02910 Coffea canephora HOM05D000023 ORTHO05D000014 9.7e-12 73.2 59 54.2
MD07G1202100 Malus domestica HOM05D000023 ORTHO05D000014 9.7e-12 73.2 65 55.4
TWI15G1062 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 9.7e-12 73.2 72 51.4
Atru.chr12.407 Acer truncatum HOM05D000023 ORTHO05D000014 8.3e-11 70.1 49 61.2
Hund13788 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.1e-10 69.7 61 50.8
Nn2g11193 Nelumbo nucifera HOM05D000023 ORTHO05D000014 1.4e-10 69.3 61 52.5
MD17G1128400 Malus domestica HOM05D000023 ORTHO05D000014 4.1e-10 67.8 63 50.8
AUR62012127 Chenopodium quinoa HOM05D000023 ORTHO05D000014 5.3e-10 67.4 72 48.6
Lalb_Chr18g0053161 Lupinus albus HOM05D000023 ORTHO05D000014 5.3e-10 67.4 67 49.3
MD09G1137900 Malus domestica HOM05D000023 ORTHO05D000014 5.3e-10 67.4 63 50.8
Cc02_g07520 Coffea canephora HOM05D000023 ORTHO05D000014 7.0e-10 67.0 67 49.3
Prupe.3G186900 Prunus persica HOM05D000023 ORTHO05D000014 7.0e-10 67.0 63 52.4
Sabra16G0020800 Salix brachista HOM05D000023 ORTHO05D000014 1.2e-09 66.2 64 43.8
Sabra16G0025600 Salix brachista HOM05D000023 ORTHO05D000014 1.2e-09 66.2 64 43.8
Ca_08176_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 1.6e-09 65.9 66 48.5
COL.COLO4_33756 Corchorus olitorius HOM05D000023 ORTHO05D000014 2.0e-09 65.5 64 45.3
Nn2g13427 Nelumbo nucifera HOM05D000023 ORTHO05D000014 2.7e-09 65.1 64 48.4
Psat5g123400 Pisum sativum HOM05D000023 ORTHO05D000014 2.7e-09 65.1 70 48.6
ClCG11G006740 Citrullus lanatus HOM05D000023 ORTHO05D000014 4.5e-09 64.3 67 46.3
Ah.10g036950 Amaranthus hybridus HOM05D000023 ORTHO05D000014 7.7e-09 63.5 72 45.8
Lalb_Chr15g0084631 Lupinus albus HOM05D000023 ORTHO05D000014 7.7e-09 63.5 72 47.2
Sc11g0007770 Simmondsia chinensis HOM05D000023 ORTHO05D000014 7.7e-09 63.5 65 40.0
PGSC0003DMG400002268 Solanum tuberosum HOM05D000023 ORTHO05D016258 7.7e-09 63.5 75 45.3
Solyc06g030510.4 Solanum lycopersicum HOM05D000023 ORTHO05D000014 1.0e-08 63.2 75 44.0
Sopen06g009570 Solanum pennellii HOM05D000023 ORTHO05D000014 1.0e-08 63.2 75 44.0
AUR62040709 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.3e-08 62.8 72 47.2
TPR.G15840 Trifolium pratense HOM05D000023 ORTHO05D000014 1.3e-08 62.8 63 47.6
EL10Ac2g04713 Beta vulgaris HOM05D000023 ORTHO05D000014 2.2e-08 62.0 76 48.7
Nitab4.5_0000042g0090 Nicotiana tabacum HOM05D000023 ORTHO05D000014 2.2e-08 62.0 56 51.8
RcHm_v2.0_Chr7g0237231 Rosa chinensis HOM05D000023 ORTHO05D000014 2.2e-08 62.0 64 48.4
arahy.Tifrunner.gnm1.ann1.9P0KUN Arachis hypogaea HOM05D000023 ORTHO05D000014 8.5e-08 60.1 75 41.3
FvH4_6g39601 Fragaria vesca HOM05D000023 ORTHO05D000014 1.5e-07 59.3 65 49.2
MD09G1138100 Malus domestica HOM05D000023 ORTHO05D016258 1.9e-07 58.9 50 56.0
TWI38G2343 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.5e-07 58.5 72 38.9
RcHm_v2.0_Chr2g0153631 Rosa chinensis HOM05D000023 ORTHO05D016258 3.2e-07 58.2 63 46.0
Gorai.013G021900 Gossypium raimondii HOM05D000023 ORTHO05D000014 4.2e-07 57.8 71 43.7
Sed0002770 Sechium edule HOM05D000023 ORTHO05D000014 4.2e-07 57.8 66 36.4
arahy.Tifrunner.gnm1.ann1.HNDE73 Arachis hypogaea HOM05D000023 ORTHO05D000014 5.5e-07 57.4 57 45.6
arahy.Tifrunner.gnm1.ann1.YK20YG Arachis hypogaea HOM05D000023 ORTHO05D000014 1.6e-06 55.8 75 38.7
CsaV3_6G001290 Cucumis sativus L. HOM05D000023 ORTHO05D000014 2.7e-06 55.1 66 36.4
Gorai.001G093000 Gossypium raimondii HOM05D000023 ORTHO05D000014 8.0e-06 53.5 64 35.9


User provided reference genes

Program Settings