Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06935 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.2e-160 570.1 300 100.0
vmacro03959 Vaccinium macrocarpon HOM05D002737 ORTHO05D005828 1.1e-140 503.8 296 91.6
Rhsim13G0195300 Rhododendron simsii HOM05D002737 ORTHO05D005828 1.0e-122 444.1 312 78.8
CSS0011545 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 7.4e-113 411.4 294 76.9
CSS0011939 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.8e-112 408.7 294 76.9
Dinv17085 Davidia involucrata HOM05D002737 ORTHO05D005828 6.9e-111 404.8 297 73.7
Actinidia07271 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.2e-109 399.8 297 75.4
Hma1.2p1_0793F.1_g218640 Hydrangea macrophylla HOM05D002737 ORTHO05D005828 8.0e-91 338.2 298 65.4
ECA248G3131 Erigeron canadensis HOM05D002737 ORTHO05D005828 4.4e-89 332.4 301 62.8
TWI79G0303 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 2.2e-88 330.1 312 63.8
Duzib168G0210 Durio zibethinus HOM05D002737 ORTHO05D005828 6.3e-88 328.6 311 65.0
Duzib150G0779 Durio zibethinus HOM05D002737 ORTHO05D005828 1.1e-87 327.8 312 63.1
TWI77G0520 Tripterygium wilfordii HOM05D002737 ORTHO05D005828 7.0e-87 325.1 312 63.5
SGA_v2.0_scaffold114G31961 Striga asiatica HOM05D002737 ORTHO05D005828 1.2e-86 324.3 311 62.4
SGA_v2.0_scaffold7G03980 Striga asiatica HOM05D002737 ORTHO05D005828 1.6e-86 323.9 305 61.6
Lj7A589T65 Lonicera japonica HOM05D002737 ORTHO05D005828 2.0e-86 323.6 298 64.4
Oeu049293.2 Olea europaea HOM05D002737 ORTHO05D005828 5.9e-86 322.0 344 57.0
Manes.01G182101 Manihot esculenta HOM05D002737 ORTHO05D005828 1.3e-85 320.9 311 60.5
MSTRG.21020 Avicennia marina HOM05D002737 ORTHO05D005828 5.0e-85 318.9 312 61.2
ClCG01G011660 Citrullus lanatus HOM05D002737 ORTHO05D005828 7.2e-84 315.1 325 61.2
MELO3C003924.2 Cucumis melo HOM05D002737 ORTHO05D005828 9.4e-84 314.7 316 61.1
Cc01_g08470 Coffea canephora HOM05D002737 ORTHO05D005828 1.6e-83 313.9 296 61.8
CAN.G745.41 Capsicum annuum HOM05D002737 ORTHO05D005828 3.6e-83 312.8 319 59.6
PGSC0003DMG400019621 Solanum tuberosum HOM05D002737 ORTHO05D005828 3.6e-83 312.8 318 59.1
CsaV3_2G009130 Cucumis sativus L. HOM05D002737 ORTHO05D005828 1.0e-82 311.2 322 58.4
Sed0023461 Sechium edule HOM05D002737 ORTHO05D005828 2.3e-82 310.1 329 58.4
Sc12g0004790 Simmondsia chinensis HOM05D002737 ORTHO05D005828 3.0e-82 309.7 301 62.5
RcHm_v2.0_Chr2g0115601 Rosa chinensis HOM05D002737 ORTHO05D005828 4.0e-82 309.3 316 58.2
Lsat_1_v5_gn_5_176321 Lactuca sativa HOM05D002737 ORTHO05D005828 6.8e-82 308.5 304 60.5
Prupe.6G178500 Prunus persica HOM05D002737 ORTHO05D005828 2.6e-81 306.6 333 55.9
Thecc.09G275600 Theobroma cacao HOM05D002737 ORTHO05D005828 4.4e-81 305.8 311 60.8
Gohir.D07G115800 Gossypium hirsutum HOM05D002737 ORTHO05D005828 1.3e-80 304.3 305 61.6
FAN26G0444 Fragaria x ananassa HOM05D002737 ORTHO05D005828 4.8e-80 302.4 317 56.2
FAN19G0045 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.1e-79 301.2 317 56.8
FAN23G1354 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.4e-79 300.8 317 56.8
Nitab4.5_0001135g0150 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.4e-79 300.8 311 58.2
Solyc11g068870.2 Solanum lycopersicum HOM05D002737 ORTHO05D005828 1.8e-79 300.4 318 56.9
Sopen11g027560 Solanum pennellii HOM05D002737 ORTHO05D005828 2.4e-79 300.1 318 56.9
FvH4_1g21730 Fragaria vesca HOM05D002737 ORTHO05D005828 5.4e-79 298.9 317 56.5
CDE06G1256 Ceratophyllum demersum HOM05D002737 ORTHO05D005828 7.0e-79 298.5 299 58.9
Nn6g34744 Nelumbo nucifera HOM05D002737 ORTHO05D005828 7.0e-79 298.5 299 59.5
Nitab4.5_0000893g0040 Nicotiana tabacum HOM05D002737 ORTHO05D005828 1.6e-78 297.4 311 57.6
Gorai.001G124100 Gossypium raimondii HOM05D002737 ORTHO05D005828 2.7e-78 296.6 306 61.4
TAR268G0004 Trochodendron aralioides HOM05D002737 ORTHO05D005828 3.5e-78 296.2 301 61.8
Haze_00725 Corylus avellana HOM05D002737 ORTHO05D005828 5.9e-78 295.4 316 56.0
GSVIVG01036054001 Vitis vinifera HOM05D002737 ORTHO05D005828 1.0e-77 294.7 201 76.6
Haze_00729 Corylus avellana HOM05D002737 ORTHO05D005828 1.3e-77 294.3 316 55.1
EL10Ac7g17115 Beta vulgaris HOM05D002737 ORTHO05D005828 1.7e-77 293.9 310 55.8
CiPaw.14G096400 Carya illinoinensis HOM05D002737 ORTHO05D005828 2.3e-77 293.5 314 55.4
Potri.009G162500 Populus trichocarpa HOM05D002737 ORTHO05D005828 2.5e-76 290.0 318 55.0
Gohir.A07G112300 Gossypium hirsutum HOM05D002737 ORTHO05D005828 3.3e-76 289.7 306 59.2
DCAR_003399 Daucus carota HOM05D002737 ORTHO05D005828 1.2e-75 287.7 306 57.5
unitig_88.g27805 Utricularia gibba HOM05D002737 ORTHO05D002121 8.0e-75 285.0 299 57.2
Migut.D02412 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.4e-74 284.3 309 56.6
Sabra15G0046000 Salix brachista HOM05D002737 ORTHO05D005828 5.2e-74 282.3 310 53.9
Sabra15G0048200 Salix brachista HOM05D002737 ORTHO05D005828 5.2e-74 282.3 310 53.9
THA.LOC104826443 Tarenaya hassleriana HOM05D002737 ORTHO05D005828 8.9e-74 281.6 320 53.4
Haze_23327 Corylus avellana HOM05D002737 ORTHO05D005828 3.4e-73 279.6 321 54.5
CANSAT64G0180 Cannabis sativa HOM05D002737 ORTHO05D005828 7.5e-73 278.5 310 56.5
Hund18792 Selenicereus undatus HOM05D002737 ORTHO05D005828 1.3e-72 277.7 335 51.0
Glyma.10G288000 Glycine max HOM05D002737 ORTHO05D005828 1.7e-72 277.3 319 53.6
MD15G1329700 Malus domestica HOM05D002737 ORTHO05D005828 4.9e-72 275.8 336 53.0
Ah.10g032410 Amaranthus hybridus HOM05D002737 ORTHO05D005828 1.4e-71 274.2 351 49.6
Lj5g0022679 Lotus japonicus HOM05D002737 ORTHO05D005828 2.4e-71 273.5 321 51.4
Sabra15G0059900 Salix brachista HOM05D002737 ORTHO05D005828 3.1e-71 273.1 317 52.7
PSO063G0569 Papaver somniferum HOM05D002737 ORTHO05D005828 7.0e-71 271.9 300 54.3
CDE08G0429 Ceratophyllum demersum HOM05D002737 ORTHO05D003752 1.2e-70 271.2 208 71.6
Glyma.20G101200 Glycine max HOM05D002737 ORTHO05D005828 2.0e-70 270.4 319 52.7
Medtr5g095010 Medicago truncatula HOM05D002737 ORTHO05D005828 2.7e-70 270.0 318 52.8
PGR119G1771 Punica granatum HOM05D002737 ORTHO05D005828 2.7e-70 270.0 326 52.1
Eucgr.J00541 Eucalyptus grandis HOM05D002737 ORTHO05D005828 3.5e-70 269.6 326 53.1
Aa31LG5G8680 Aethionema arabicum HOM05D002737 ORTHO05D005828 5.0e-69 265.8 310 51.3
Peaxi162Scf01324g00241 Petunia axillaris HOM05D002737 ORTHO05D005828 3.3e-68 263.1 319 53.9
Psat2g008640 Pisum sativum HOM05D002737 ORTHO05D005828 5.6e-68 262.3 317 51.4
COL.COLO4_22657 Corchorus olitorius HOM05D002737 ORTHO05D005828 1.2e-67 261.2 311 53.7
Lalb_Chr02g0143691 Lupinus albus HOM05D002737 ORTHO05D005828 1.2e-67 261.2 319 51.7
VMungo0720G0453 Vigna mungo HOM05D002737 ORTHO05D005828 2.8e-67 260.0 312 51.3
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.4e-66 257.7 318 49.7
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 1.4e-66 257.7 318 49.7
Lj5g0011855 Lotus japonicus HOM05D002737 ORTHO05D005828 1.8e-66 257.3 321 49.5
AT2G27285 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 4.0e-66 256.1 320 49.7
Aqoxy4G02622 Aquilegia oxysepala HOM05D002737 ORTHO05D005828 8.9e-66 255.0 301 53.5
arahy.Tifrunner.gnm1.ann1.AGV1MP Arachis hypogaea HOM05D002737 ORTHO05D005828 1.2e-65 254.6 313 51.1
AL4G21200 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 3.4e-65 253.1 324 49.1
Peaxi162Scf01010g00216 Petunia axillaris HOM05D002737 ORTHO05D005828 5.8e-65 252.3 256 58.6
Peaxi162Scf00010g03312 Petunia axillaris HOM05D002737 ORTHO05D005828 9.8e-65 251.5 256 57.4
arahy.Tifrunner.gnm1.ann1.4SNC56 Arachis hypogaea HOM05D002737 ORTHO05D005828 1.3e-64 251.1 313 50.2
Sp4g10090 Schrenkiella parvula HOM05D002737 ORTHO05D005828 1.7e-64 250.8 307 49.8
BcaB06g28137 Brassica carinata HOM05D002737 ORTHO05D005828 8.3e-64 248.4 307 50.5
MBI01_g04520_MAGBIO Magnolia biondii HOM05D002737 ORTHO05D005828 5.4e-63 245.7 295 51.9
ATR0807G231 Amborella trichopoda HOM05D002737 ORTHO05D005828 3.5e-62 243.0 318 50.3
QL07p000712 Quercus lobata HOM05D002737 ORTHO05D005828 3.5e-62 243.0 286 51.7
Carub.0004s0789 Capsella rubella HOM05D002737 ORTHO05D005828 7.8e-62 241.9 320 48.1
CARHR119810 Cardamine hirsuta HOM05D002737 ORTHO05D005828 1.0e-61 241.5 315 49.5
Thhalv10002052m.g Eutrema salsugineum HOM05D002737 ORTHO05D005828 1.3e-61 241.1 312 49.4
Peaxi162Scf00010g03410 Petunia axillaris HOM05D002737 ORTHO05D005828 2.3e-61 240.4 256 54.7
Ciclev10028821m.g Citrus clementina HOM05D002737 ORTHO05D005828 4.3e-60 236.1 332 47.3
Carub.0004s0788 Capsella rubella HOM05D002737 ORTHO05D005828 7.3e-60 235.3 310 49.4
TPR.G14160 Trifolium pratense HOM05D002737 ORTHO05D005828 6.2e-59 232.3 323 47.4
Actinidia24241 Actinidia chinensis HOM05D002737 ORTHO05D005828 2.6e-57 226.9 178 71.9
Phvul.007G013400 Phaseolus vulgaris HOM05D002737 ORTHO05D005828 9.8e-57 224.9 317 45.7
Sabra15G0053400 Salix brachista HOM05D002737 ORTHO05D005828 4.9e-56 222.6 310 46.8
BcaC02g08257 Brassica carinata HOM05D002737 ORTHO05D005828 4.1e-55 219.5 197 62.4
C04p56640 Brassica napus HOM05D002737 ORTHO05D005828 4.1e-55 219.5 197 62.4
AL4G21190 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 7.0e-55 218.8 298 47.0
Sabra09G0126900 Salix brachista HOM05D002737 ORTHO05D005828 1.7e-53 214.2 263 49.0
AagrBONN_evm.TU.Sc2ySwM_368.3225 Anthoceros agrestis HOM05D002737 ORTHO05D005828 6.6e-53 212.2 195 59.5
Atru.chr3.3139 Acer truncatum HOM05D002737 ORTHO05D005828 1.9e-52 210.7 212 59.4
A04p20820 Brassica napus HOM05D002737 ORTHO05D005828 5.6e-52 209.1 313 46.3
BraA04t17655Z Brassica rapa HOM05D002737 ORTHO05D005828 5.6e-52 209.1 313 46.3
SEGI_17121 Sequoiadendron giganteum HOM05D002737 ORTHO05D005828 4.7e-51 206.1 175 66.3
Sabra15G0053700 Salix brachista HOM05D002737 ORTHO05D005828 6.2e-51 205.7 204 57.4
HPP92_021234 Vanilla planifolia HOM05D002737 ORTHO05D005828 1.1e-50 204.9 321 44.2
BolC4t27191H Brassica oleracea HOM05D002737 ORTHO05D005828 1.2e-49 201.4 308 45.8
AT2G27280 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 2.6e-49 200.3 298 43.6
AL1G53070 Arabidopsis lyrata HOM05D002737 ORTHO05D005828 5.8e-49 199.1 209 54.1
CiPaw.13G131400 Carya illinoinensis HOM05D002737 ORTHO05D005828 3.7e-48 196.4 239 52.7
AT1G55928 Arabidopsis thaliana HOM05D002737 ORTHO05D005828 5.4e-47 192.6 226 52.7
Zm00001eb422940 Zea mays HOM05D002737 ORTHO05D005828 9.2e-47 191.8 257 50.6
Pp3c10_11700 Physcomitrium patens HOM05D002737 ORTHO05D005828 1.0e-45 188.3 338 40.2
CBR_g45752 Chara braunii HOM05D002737 ORTHO05D005828 5.2e-42 176.0 205 51.2
Mapoly0024s0122 Marchantia polymorpha HOM05D002737 ORTHO05D005828 1.5e-41 174.5 239 46.9
Os04g0440000 Oryza sativa ssp. japonica HOM05D002737 ORTHO05D005828 2.6e-41 173.7 265 46.4
HanXRQChr03g0065531 Helianthus annuus HOM05D002737 ORTHO05D005828 2.9e-40 170.2 222 51.4
Gohir.D05G081600 Gossypium hirsutum HOM05D002737 ORTHO05D005828 6.4e-40 169.1 267 49.4
CBR_g6328 Chara braunii HOM05D002737 ORTHO05D005828 2.4e-39 167.2 269 41.6
Actinidia24240 Actinidia chinensis HOM05D002737 ORTHO05D005828 4.6e-38 162.9 101 83.2
Potri.004G201300 Populus trichocarpa HOM05D002737 ORTHO05D005828 4.6e-38 162.9 303 41.6
QL07p000775 Quercus lobata HOM05D002737 ORTHO05D005828 6.6e-37 159.1 250 43.2
CARHR119800 Cardamine hirsuta HOM05D002737 ORTHO05D005828 3.3e-36 156.8 171 57.9
Migut.D02400 Erythranthe guttata HOM05D002737 ORTHO05D005828 5.6e-36 156.0 308 39.6
AUR62037790 Chenopodium quinoa HOM05D002737 ORTHO05D005828 1.4e-34 151.4 207 48.8
AUR62018224 Chenopodium quinoa HOM05D002737 ORTHO05D005828 4.0e-34 149.8 210 47.1
Cre17.g734000 Chlamydomonas reinhardtii HOM05D002737 ORTHO05D005828 9.3e-31 138.7 202 40.1
Migut.D02413 Erythranthe guttata HOM05D002737 ORTHO05D005828 1.6e-30 137.9 202 49.5
FAN28G1974 Fragaria x ananassa HOM05D002737 ORTHO05D005828 1.7e-29 134.4 110 64.5
QL07p000693 Quercus lobata HOM05D002737 ORTHO05D009499 3.0e-29 133.7 196 43.9
Lalb_Chr06g0164021 Lupinus albus HOM05D002737 ORTHO05D005828 1.9e-28 131.0 108 63.9
CSS0037550 Camellia sinensis var. sinensis HOM05D002737 ORTHO05D005828 4.3e-28 129.8 98 71.4
MCO06G117 Micromonas commoda HOM05D002737 ORTHO05D005828 1.3e-27 128.3 351 32.5
MD01G1023000 Malus domestica HOM05D002737 ORTHO05D005828 8.1e-27 125.6 103 66.0
Rhsim13G0195400 Rhododendron simsii HOM05D002737 ORTHO05D005828 2.0e-25 120.9 141 54.6
Oeu025863.1 Olea europaea HOM05D002737 ORTHO05D005828 2.3e-21 107.5 149 49.7
arahy.Tifrunner.gnm1.ann1.G9FM3T Arachis hypogaea HOM05D002737 ORTHO05D005828 1.5e-17 94.7 95 53.7
arahy.Tifrunner.gnm1.ann1.0K86JE Arachis hypogaea HOM05D002737 ORTHO05D005828 4.5e-17 93.2 300 33.3
AagrBONN_evm.TU.Sc2ySwM_368.3239 Anthoceros agrestis HOM05D002737 ORTHO05D005828 1.7e-16 91.3 71 69.0
SHI06201 Sapria himalayana HOM05D002737 ORTHO05D005828 2.2e-16 90.9 109 52.3
arahy.Tifrunner.gnm1.ann1.K04YXN Arachis hypogaea HOM05D002737 ORTHO05D023756 9.3e-15 85.5 95 52.6
QL07p000753 Quercus lobata HOM05D002737 ORTHO05D005828 5.1e-13 79.7 85 54.1
Cpa.g.sc23.121 Carica papaya HOM05D002737 ORTHO05D005828 7.4e-12 75.9 138 38.4
AagrBONN_evm.TU.Sc2ySwM_368.3190 Anthoceros agrestis HOM05D000001 ORTHO05D072262 7.6e-09 65.9 53 64.2
vmacro01159 Vaccinium macrocarpon HOM05D000176 ORTHO05D000106 1.9e-07 61.2 56 69.6
CARHR119790 Cardamine hirsuta HOM05D002737 ORTHO05D005828 7.1e-07 59.3 180 32.8


User provided reference genes

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