Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 3684.8 1875 100.0
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 3054.2 1852 85.6
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 2587.4 1897 73.5
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 2419.8 1915 69.1
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 2278.8 1911 65.4
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 2265.0 1931 64.5
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 2233.0 1909 64.3
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 2231.1 2041 61.7
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 2167.1 1954 61.7
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 2155.9 1918 62.7
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2148.2 1914 62.3
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 2120.9 1895 61.6
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 2114.0 1904 61.8
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 2112.4 1909 61.7
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 2107.8 1904 60.8
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 2102.0 1923 61.8
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2092.4 1897 61.7
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 2084.7 1899 61.5
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2072.4 1910 60.8
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 2066.2 1908 60.6
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 2065.0 1910 60.7
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 2037.7 1848 61.0
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2036.9 1921 60.4
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 2033.5 1998 58.2
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 2032.3 1905 60.2
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 2029.6 1905 59.8
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 2028.4 1907 59.0
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 2024.6 1749 63.1
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2021.9 1905 59.2
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 2021.5 1908 59.5
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 2020.4 1905 59.1
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2015.7 1893 60.4
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 2014.6 1941 59.2
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 2014.2 1902 58.9
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 2008.4 1916 59.7
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 2007.3 2023 56.8
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 2004.6 1904 58.4
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 2002.6 1833 61.1
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1999.6 1964 58.9
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1994.2 1905 58.7
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1988.0 1902 59.0
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1984.1 1884 58.4
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1983.4 1907 58.8
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 1983.0 1921 59.1
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 1976.8 1922 58.9
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 1975.3 1895 57.9
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1970.7 1917 58.3
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 0.0e+00 1970.3 1835 61.1
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1964.5 1573 67.3
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1958.3 1898 58.1
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1957.6 1918 58.6
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1946.4 1903 57.3
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1943.7 2020 55.7
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1942.9 1901 57.3
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1933.7 1883 58.7
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1932.5 1909 57.4
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1927.1 1908 56.8
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1907.9 1951 56.0
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1904.8 1908 57.3
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1902.5 1897 58.1
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1900.9 1920 56.9
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1897.1 1964 55.1
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1892.9 1898 56.4
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1879.0 1893 57.4
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1869.4 1885 56.0
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1835.1 1854 54.7
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1830.8 1615 62.6
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1825.8 1881 54.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1824.7 1923 54.9
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1804.6 1868 55.4
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1784.2 1881 54.9
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1772.7 1868 54.7
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1772.7 1621 61.1
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1768.4 1897 53.9
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1767.7 1885 54.4
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1767.7 1895 53.6
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1764.2 1898 53.3
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1761.9 1909 55.1
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 0.0e+00 1742.2 1758 57.7
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 0.0e+00 1728.4 1417 67.5
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1717.6 1901 53.0
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1716.4 1884 53.1
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1709.5 1900 52.4
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1704.1 1925 52.3
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1703.0 1874 52.8
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1698.7 1893 52.5
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1695.2 1928 51.8
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1687.5 1549 60.9
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1679.8 1876 52.2
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1674.4 1918 51.3
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1671.0 1903 51.0
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 0.0e+00 1577.0 1866 50.6
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1519.6 1561 54.3
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1515.4 1955 48.0
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 0.0e+00 1441.0 1321 62.5
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 0.0e+00 1424.8 1280 60.8
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1408.3 1312 59.5
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1322.4 1981 41.9
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 0.0e+00 1310.8 1897 44.2
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 0.0e+00 1258.8 1689 45.2
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 0.0e+00 1251.9 1243 59.1
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 0.0e+00 1195.3 1460 49.2
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1164.8 1914 41.8
TAR623G0474 Trochodendron aralioides HOM05D000764 ORTHO05D004953 1.2e-307 1060.8 796 73.6
Cpa.g.sc119.44 Carica papaya HOM05D000764 ORTHO05D004953 3.8e-306 1055.8 799 71.6
COL.COLO4_07280 Corchorus olitorius HOM05D000764 ORTHO05D004953 5.2e-295 1018.8 797 70.4
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 3.7e-293 1012.7 1080 55.1
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 1.7e-266 924.1 1018 52.3
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 6.6e-266 922.2 1104 51.1
AUR62019164 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.2e-264 917.9 851 58.4
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 3.9e-210 736.9 2060 31.4
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.0e-194 685.6 1019 42.8
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.0e-194 685.6 2047 29.4
SHI31301 Sapria himalayana HOM05D000764 ORTHO05D004953 4.8e-192 676.8 1033 42.3
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 5.9e-182 643.3 682 54.4
Migut.L00371 Erythranthe guttata HOM05D000764 ORTHO05D004953 6.5e-173 613.2 435 72.2
Os05g0447500 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 8.0e-163 579.7 598 52.7
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.7e-152 545.4 1910 28.6
Actinidia02700 Actinidia chinensis HOM05D000764 ORTHO05D004953 2.3e-149 535.0 331 83.1
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 2.5e-140 505.0 1912 26.9
Actinidia02701 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-131 476.1 317 81.1
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 3.9e-117 427.9 1493 27.7
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 4.2e-111 407.9 794 37.0
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 1.8e-106 392.5 562 44.5
Aqoxy6G02541 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 2.3e-85 322.4 303 62.0
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 2.6e-81 308.9 380 48.9
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 6.1e-78 297.7 377 46.4
CiPaw.14G136600 Carya illinoinensis HOM05D000764 ORTHO05D004953 2.9e-72 278.9 250 64.4
VMungo1080G1023 Vigna mungo HOM05D000764 ORTHO05D004953 2.5e-71 275.8 194 74.7
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 4.2e-71 275.0 316 50.9
Dinv39954 Davidia involucrata HOM05D000764 ORTHO05D004953 1.1e-68 266.9 300 54.3
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 3.3e-68 265.4 396 44.4
CBR_g38308 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-67 261.5 1104 26.5
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 1.8e-58 233.0 451 38.4
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 5.4e-58 231.5 283 48.8
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.2e-57 230.3 234 55.6
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 2.2e-56 226.1 223 60.1
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 1.2e-52 213.8 246 53.3
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 7.3e-47 194.5 315 39.0
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 2.3e-40 172.9 625 27.4
Dinv39953 Davidia involucrata HOM05D000100 ORTHO05D000052 6.6e-40 171.4 125 76.8
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 4.0e-37 162.2 185 51.9
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 6.4e-35 154.8 215 41.4
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 1.0e-32 147.5 208 44.7
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 1.9e-31 143.3 106 67.0
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.8e-30 139.4 193 37.8
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 5.8e-28 131.7 128 57.8
Nn1g03529 Nelumbo nucifera HOM05D000764 ORTHO05D004953 2.1e-25 123.2 75 76.0
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 2.7e-25 122.9 129 53.5
Psat5g238800 Pisum sativum HOM05D000764 ORTHO05D002785 7.6e-20 104.8 113 55.8
Psat5g238960 Pisum sativum HOM05D000764 ORTHO05D002785 7.6e-20 104.8 113 55.8
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.9e-18 100.1 169 43.8
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 3.2e-18 99.4 132 47.0
Psat2g093280 Pisum sativum HOM05D002199 ORTHO05D007829 3.5e-17 95.9 182 42.3
CiPaw.14G136500 Carya illinoinensis HOM05D000764 ORTHO05D004953 3.0e-16 92.8 67 65.7
SHI31300 Sapria himalayana HOM05D000764 ORTHO05D004953 4.3e-15 89.0 57 71.9
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.2e-14 87.4 56 80.4
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 7.6e-12 78.2 53 73.6
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 2.2e-11 76.6 111 45.0
Sc16g0012210 Simmondsia chinensis HOM05D000764 ORTHO05D004953 1.2e-09 70.9 179 34.1
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 1.1e-07 64.3 180 33.3
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 3.6e-06 59.3 79 41.8
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 8.1e-06 58.2 35 77.1
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 8.1e-06 58.2 89 39.3


User provided reference genes

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