Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.0e-93 345.9 197 100.0
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.2e-69 266.9 179 87.2
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 1.9e-54 216.5 179 74.3
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 3.7e-50 202.2 189 65.6
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 8.1e-50 201.1 178 62.4
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 2.4e-49 199.5 178 70.2
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 3.1e-49 199.1 181 61.3
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 9.0e-49 197.6 179 69.8
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 9.0e-49 197.6 178 59.0
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 1.2e-48 197.2 177 62.1
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 2.6e-48 196.1 178 65.2
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 1.3e-47 193.7 178 66.9
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 1.7e-47 193.4 176 57.4
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 2.2e-47 193.0 179 58.7
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.9e-47 191.8 177 60.5
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 1.1e-46 190.7 181 61.9
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 1.4e-46 190.3 175 61.7
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 1.9e-46 189.9 181 58.6
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 9.3e-46 187.6 179 58.1
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.2e-45 187.2 179 63.7
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 1.6e-45 186.8 179 68.2
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 1.6e-45 186.8 178 57.3
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 2.1e-45 186.4 179 57.0
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 2.7e-45 186.0 174 66.1
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.5e-45 185.7 184 59.2
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 6.0e-45 184.9 181 59.1
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 1.0e-44 184.1 181 65.2
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.3e-44 183.0 179 63.1
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 2.3e-44 183.0 178 56.7
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 3.0e-44 182.6 180 63.9
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 6.7e-44 181.4 179 56.4
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 8.7e-44 181.0 180 57.8
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 1.1e-43 180.6 178 59.0
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.1e-43 180.6 179 54.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.5e-43 180.3 178 66.9
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.9e-43 179.9 178 56.7
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 1.9e-43 179.9 178 56.7
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.9e-43 179.9 178 65.2
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 1.9e-43 179.9 178 54.5
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 3.3e-43 179.1 178 57.3
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 4.3e-43 178.7 178 57.3
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 5.7e-43 178.3 178 56.2
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 5.7e-43 178.3 178 64.6
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 5.7e-43 178.3 178 64.6
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 5.7e-43 178.3 178 59.6
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 9.6e-43 177.6 176 63.1
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 9.6e-43 177.6 171 56.7
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 1.3e-42 177.2 186 61.3
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 2.8e-42 176.0 180 56.7
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 2.8e-42 176.0 178 56.2
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 3.7e-42 175.6 179 53.1
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 3.7e-42 175.6 178 55.1
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 6.2e-42 174.9 179 53.1
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 8.2e-42 174.5 132 73.5
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.1e-41 174.1 178 55.1
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 1.4e-41 173.7 179 57.0
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 1.8e-41 173.3 171 65.5
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 1.8e-41 173.3 176 52.3
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 5.3e-41 171.8 178 55.1
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 9.0e-41 171.0 162 63.6
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 1.2e-40 170.6 178 60.7
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.2e-40 170.6 169 56.2
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.5e-40 170.2 183 55.2
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.3e-39 167.2 179 52.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 1.7e-39 166.8 175 50.9
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.2e-39 166.4 179 52.0
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 2.9e-39 166.0 190 51.1
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 5.0e-39 165.2 166 65.1
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.0e-39 165.2 177 63.8
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 1.4e-38 163.7 178 58.4
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 1.4e-38 163.7 177 56.5
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 1.4e-38 163.7 179 53.6
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 3.2e-38 162.5 178 61.8
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 3.2e-38 162.5 171 52.6
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 4.2e-38 162.2 178 52.2
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 5.5e-38 161.8 179 58.7
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 1.6e-37 160.2 178 51.1
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 1.6e-37 160.2 177 61.0
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 2.1e-37 159.8 173 50.9
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 2.7e-37 159.5 168 60.7
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 2.7e-37 159.5 183 51.4
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 3.5e-37 159.1 178 50.6
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 7.9e-37 157.9 176 52.3
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 1.0e-36 157.5 179 51.4
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 1.0e-36 157.5 179 53.6
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 1.0e-36 157.5 170 58.2
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-36 157.1 178 51.1
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 1.3e-36 157.1 178 51.1
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.3e-36 157.1 106 86.8
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 1.3e-36 157.1 118 80.5
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.8e-36 156.8 178 50.0
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 1.8e-36 156.8 171 62.0
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 2.3e-36 156.4 182 50.5
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 3.0e-36 156.0 178 50.6
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 6.7e-36 154.8 179 58.7
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 1.5e-35 153.7 184 59.8
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.5e-35 153.7 181 55.8
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.5e-35 153.7 179 57.0
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.9e-35 153.3 121 63.6
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 9.7e-35 151.0 178 57.9
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.6e-34 150.2 190 58.4
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.8e-34 149.4 247 40.9
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 3.7e-34 149.1 106 70.8
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.8e-34 148.7 182 57.1
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 1.1e-33 147.5 140 56.4
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 2.4e-33 146.4 182 48.9
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 2.4e-33 146.4 177 47.5
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 3.1e-33 146.0 171 49.7
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 9.0e-33 144.4 173 48.6
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 1.5e-32 143.7 165 57.0
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 4.5e-32 142.1 195 53.3
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 7.7e-32 141.4 107 65.4
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 7.7e-32 141.4 112 67.0
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.9e-31 139.4 104 68.3
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 2.9e-31 139.4 179 56.4
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 3.8e-31 139.0 197 53.3
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.1e-30 137.5 133 57.1
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 1.2e-29 134.0 178 43.3
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 1.2e-29 134.0 108 75.0
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 2.1e-29 133.3 182 45.6
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 3.6e-29 132.5 143 50.3
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 4.3e-27 125.6 106 71.7
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 1.7e-26 123.6 130 53.1
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 1.4e-25 120.6 130 50.8
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 2.2e-23 113.2 115 56.5
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 2.5e-22 109.8 178 39.3
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 1.2e-21 107.5 80 68.8
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 6.1e-21 105.1 130 52.3
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 2.3e-20 103.2 188 37.2
Actinidia31636 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.1e-19 100.9 134 50.7
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 1.0e-15 87.8 76 60.5
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 6.1e-13 78.6 175 32.0
C03p81600 Brassica napus HOM05D004876 ORTHO05D005488 1.8e-12 77.0 111 43.2
BolC3t20430H Brassica oleracea HOM05D004876 ORTHO05D005488 1.8e-12 77.0 111 43.2
C01p26050 Brassica napus HOM05D004876 ORTHO05D005488 3.0e-12 76.3 105 44.8
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 6.5e-07 58.5 131 29.8
Oeu039385.1 Olea europaea HOM05D002276 ORTHO05D002381 8.5e-07 58.2 66 71.2
vmacro21960 Vaccinium macrocarpon HOM05D000001 ORTHO05D009259 4.2e-06 55.8 41 70.7
Zm00001eb290470 Zea mays HOM05D004876 ORTHO05D005488 4.2e-06 55.8 47 48.9


User provided reference genes

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