Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 3.8e-169 598.2 316 100.0
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.9e-75 287.0 317 55.8
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.1e-70 269.6 195 74.9
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.6e-69 266.5 195 74.9
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 9.0e-54 214.9 201 60.7
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 5.8e-53 212.2 308 45.8
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 3.9e-49 199.5 306 44.4
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 3.0e-41 173.3 244 47.5
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 5.9e-37 159.1 268 42.2
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 6.5e-36 155.6 219 45.7
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 4.2e-35 152.9 335 35.8
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.6e-34 149.4 221 43.4
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.0e-33 148.3 224 46.9
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 2.3e-33 147.1 221 43.0
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 5.7e-32 142.5 230 43.0
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 9.7e-32 141.7 208 46.2
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 2.2e-31 140.6 222 44.6
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.2e-31 138.7 215 40.0
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 8.2e-31 138.7 250 40.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.1e-30 138.3 247 40.5
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 1.4e-30 137.9 219 42.9
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 1.4e-30 137.9 222 41.4
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 1.8e-30 137.5 239 41.4
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.1e-30 136.3 240 39.2
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 5.3e-30 136.0 219 39.7
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-29 134.8 232 37.9
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.2e-29 134.8 232 37.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.6e-29 133.7 319 36.1
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 2.6e-29 133.7 222 40.5
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 3.4e-29 133.3 207 42.0
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 5.9e-29 132.5 206 41.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.7e-29 132.1 229 39.3
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.3e-28 131.3 245 38.8
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.7e-28 131.0 267 36.3
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.7e-28 131.0 255 38.8
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 3.8e-28 129.8 223 39.9
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 5.0e-28 129.4 174 42.0
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 6.5e-28 129.0 261 39.8
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 6.5e-28 129.0 258 33.3
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 8.5e-28 128.6 221 39.8
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 8.5e-28 128.6 263 37.6
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 3.2e-27 126.7 220 38.2
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 7.2e-27 125.6 223 40.4
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 7.2e-27 125.6 185 36.8
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.2e-27 125.6 201 40.8
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 9.4e-27 125.2 247 36.8
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 9.4e-27 125.2 318 36.8
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 9.4e-27 125.2 272 34.6
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 1.2e-26 124.8 241 36.1
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 2.7e-26 123.6 223 41.3
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 3.6e-26 123.2 199 42.2
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 3.6e-26 123.2 225 41.8
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 7.9e-26 122.1 249 39.0
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 7.9e-26 122.1 186 39.2
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.0e-25 121.7 212 39.6
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.8e-25 120.9 261 34.1
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 5.1e-25 119.4 224 37.9
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 6.7e-25 119.0 217 38.2
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 8.8e-25 118.6 194 42.3
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 1.1e-24 118.2 222 40.1
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.0e-24 117.5 275 33.8
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 2.6e-24 117.1 198 37.9
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.3e-24 116.7 250 34.8
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.3e-24 116.7 250 34.8
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 3.3e-24 116.7 251 33.1
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 4.4e-24 116.3 308 33.4
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 5.7e-24 115.9 339 28.9
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 7.4e-24 115.5 265 34.3
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.3e-23 114.8 241 35.3
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.7e-23 114.4 248 37.1
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.7e-23 114.4 216 39.4
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 3.7e-23 113.2 228 33.8
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 4.8e-23 112.8 266 34.2
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.8e-23 112.8 243 34.6
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 6.3e-23 112.5 195 37.4
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 6.3e-23 112.5 185 41.6
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 8.2e-23 112.1 225 36.0
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 8.2e-23 112.1 206 40.8
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 1.1e-22 111.7 307 33.9
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.8e-22 110.9 209 37.3
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.4e-22 110.5 325 32.9
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 3.1e-22 110.2 192 38.5
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 3.1e-22 110.2 250 36.4
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.1e-22 110.2 223 34.1
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 4.1e-22 109.8 144 48.6
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 4.1e-22 109.8 179 40.2
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 4.1e-22 109.8 145 44.8
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 4.1e-22 109.8 344 29.1
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.3e-22 109.4 259 29.0
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 1.2e-21 108.2 201 39.8
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.5e-21 106.3 243 34.2
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.9e-21 105.9 243 34.2
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.9e-21 105.9 243 34.2
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.9e-21 105.9 243 34.2
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 1.0e-20 105.1 243 33.3
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.2e-20 104.0 312 30.8
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 2.2e-20 104.0 229 35.4
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 2.9e-20 103.6 257 36.6
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 8.5e-20 102.1 178 32.6
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 1.1e-19 101.7 242 35.5
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.4e-19 101.3 186 38.7
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 1.9e-19 100.9 228 36.0
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 3.2e-19 100.1 263 33.8
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.2e-19 99.8 249 33.3
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 5.5e-19 99.4 209 36.8
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 5.5e-19 99.4 132 46.2
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 9.4e-19 98.6 112 51.8
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.2e-18 98.2 188 38.3
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.6e-18 97.8 241 32.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 3.6e-18 96.7 250 34.4
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 3.6e-18 96.7 242 33.5
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.7e-18 96.3 203 37.9
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 4.7e-18 96.3 146 46.6
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 7.9e-18 95.5 219 35.6
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 7.9e-18 95.5 254 33.1
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.8e-17 94.4 187 36.9
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 3.0e-17 93.6 210 34.8
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 5.2e-17 92.8 250 34.0
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 6.7e-17 92.4 243 35.8
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 2.0e-16 90.9 185 35.7
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 3.3e-16 90.1 230 33.0
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 3.3e-16 90.1 338 31.1
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 3.3e-16 90.1 370 28.9
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 5.7e-16 89.4 148 40.5
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 5.7e-16 89.4 261 33.0
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 5.7e-16 89.4 227 33.0
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 7.4e-16 89.0 249 31.7
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 6.3e-15 85.9 312 28.5
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 1.8e-14 84.3 96 51.0
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 3.1e-14 83.6 226 34.1
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.2e-13 81.6 80 60.0
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 2.0e-13 80.9 293 28.7
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 2.0e-13 80.9 247 31.6
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.0e-13 80.9 251 30.3
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 5.9e-13 79.3 98 49.0
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 7.7e-13 79.0 186 32.8
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 1.7e-12 77.8 258 31.8
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 2.2e-12 77.4 214 28.5
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 1.1e-11 75.1 208 31.2
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.9e-11 74.3 320 26.6
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.2e-11 73.2 227 30.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.2e-10 71.6 202 33.7
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 2.7e-10 70.5 219 30.6
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.6e-10 70.1 242 29.8
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 4.7e-10 69.7 253 30.0
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 6.7e-09 65.9 235 31.5
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.6e-08 63.9 242 31.0
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 1.1e-06 58.5 260 28.8
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 9.1e-06 55.5 97 33.0


User provided reference genes

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