Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06869 Vaccinium macrocarpon HOM05D005592 ORTHO05D006067 6.1e-219 763.8 379 100.0
Rhsim03G0155100 Rhododendron simsii HOM05D005592 ORTHO05D006067 6.6e-141 504.6 426 63.1
Actinidia13627 Actinidia chinensis HOM05D005592 ORTHO05D006067 2.4e-119 433.0 377 59.7
Lj1C971G13 Lonicera japonica HOM05D005592 ORTHO05D006067 2.1e-110 403.3 380 55.5
Hma1.2p1_0264F.1_g105710 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 9.0e-106 387.9 384 52.1
Hma1.2p1_0264F.1_g105700 Hydrangea macrophylla HOM05D005592 ORTHO05D006067 2.6e-105 386.3 373 53.1
Peaxi162Scf00073g02027 Petunia axillaris HOM05D005592 ORTHO05D006067 7.4e-100 368.2 363 52.1
TAR369G0313 Trochodendron aralioides HOM05D005592 ORTHO05D006067 2.8e-99 366.3 380 52.1
Nitab4.5_0001130g0030 Nicotiana tabacum HOM05D005592 ORTHO05D006067 4.8e-99 365.5 374 50.0
CAN.G1151.3 Capsicum annuum HOM05D005592 ORTHO05D006067 1.1e-95 354.4 354 50.8
Sopen03g025240 Solanum pennellii HOM05D005592 ORTHO05D006067 1.0e-93 347.8 370 50.0
Nitab4.5_0000103g0070 Nicotiana tabacum HOM05D005592 ORTHO05D006067 1.8e-93 347.1 373 48.3
EL10Ac2g02700 Beta vulgaris HOM05D005592 ORTHO05D006067 1.5e-92 344.0 377 45.1
Cfa001174 Carpinus fangiana HOM05D005592 ORTHO05D006067 4.4e-92 342.4 383 47.5
Nn5g26734 Nelumbo nucifera HOM05D005592 ORTHO05D006067 4.4e-92 342.4 380 46.8
Cc02_g04980 Coffea canephora HOM05D005592 ORTHO05D006067 5.7e-92 342.0 372 49.2
MD07G1239100 Malus domestica HOM05D005592 ORTHO05D006067 5.7e-92 342.0 371 48.2
TPR.G13972 Trifolium pratense HOM05D005592 ORTHO05D006067 2.2e-91 340.1 379 47.5
HanXRQChr09g0252351 Helianthus annuus HOM05D005592 ORTHO05D006067 2.8e-91 339.7 367 49.0
CANSAT56G3301 Cannabis sativa HOM05D005592 ORTHO05D006067 8.2e-91 338.2 379 47.5
Hund15772 Selenicereus undatus HOM05D005592 ORTHO05D006067 1.1e-90 337.8 381 45.1
Migut.F00557 Erythranthe guttata HOM05D005592 ORTHO05D006067 6.9e-90 335.1 365 48.5
Ah.10g029720 Amaranthus hybridus HOM05D005592 ORTHO05D006067 9.1e-90 334.7 378 46.0
Psat5g070400 Pisum sativum HOM05D005592 ORTHO05D006067 9.1e-90 334.7 379 46.7
Medtr3g093440 Medicago truncatula HOM05D005592 ORTHO05D006067 1.5e-89 334.0 379 47.2
AUR62032559 Chenopodium quinoa HOM05D005592 ORTHO05D006067 2.2e-88 330.1 379 45.4
SalBow3G4308 Salvia bowleyana HOM05D005592 ORTHO05D006067 5.0e-88 328.9 386 46.1
ClCG03G006970 Citrullus lanatus HOM05D005592 ORTHO05D006067 6.5e-88 328.6 372 47.8
Ca_16843_v3 Cicer arietinum L. HOM05D005592 ORTHO05D006067 8.5e-88 328.2 379 46.2
Duzib066G0005 Durio zibethinus HOM05D005592 ORTHO05D006067 8.5e-88 328.2 380 47.9
Manes.18G121600 Manihot esculenta HOM05D005592 ORTHO05D006067 8.5e-88 328.2 323 52.6
RcHm_v2.0_Chr1g0372931 Rosa chinensis HOM05D005592 ORTHO05D006067 2.5e-87 326.6 375 47.2
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 3.2e-87 326.2 373 49.1
Potri.016G144200 Populus trichocarpa HOM05D005592 ORTHO05D006067 3.2e-87 326.2 377 47.2
FAN01G0671 Fragaria x ananassa HOM05D005592 ORTHO05D006067 4.2e-87 325.9 371 47.2
Sed0013074 Sechium edule HOM05D005592 ORTHO05D006067 5.5e-87 325.5 370 46.8
PSO339G4695 Papaver somniferum HOM05D005592 ORTHO05D006067 7.2e-87 325.1 374 45.5
Thecc.10G188900 Theobroma cacao HOM05D005592 ORTHO05D006067 1.2e-86 324.3 387 46.3
COL.COLO4_19504 Corchorus olitorius HOM05D005592 ORTHO05D006067 2.1e-86 323.6 387 46.3
Gohir.A13G008900 Gossypium hirsutum HOM05D005592 ORTHO05D006067 2.7e-86 323.2 382 46.9
Gohir.D13G009600 Gossypium hirsutum HOM05D005592 ORTHO05D006067 4.7e-86 322.4 382 46.9
AUR62031675 Chenopodium quinoa HOM05D005592 ORTHO05D006067 6.1e-86 322.0 315 49.2
Eucgr.H00237 Eucalyptus grandis HOM05D005592 ORTHO05D006067 6.1e-86 322.0 370 45.9
Glyma.04G225100 Glycine max HOM05D005592 ORTHO05D006067 8.0e-86 321.6 374 48.4
CsaV3_1G032540 Cucumis sativus L. HOM05D005592 ORTHO05D006067 6.7e-85 318.5 369 46.6
Glyma.06G139600 Glycine max HOM05D005592 ORTHO05D006067 1.1e-84 317.8 374 46.8
Sabra04G0160100 Salix brachista HOM05D005592 ORTHO05D006067 1.5e-84 317.4 377 45.9
FAN03G0809 Fragaria x ananassa HOM05D005592 ORTHO05D006067 2.0e-84 317.0 373 46.1
Gorai.013G010300 Gossypium raimondii HOM05D005592 ORTHO05D006067 2.0e-84 317.0 382 46.3
TWI75G0267 Tripterygium wilfordii HOM05D005592 ORTHO05D006067 5.7e-84 315.5 383 44.9
CiPaw.01G308100 Carya illinoinensis HOM05D005592 ORTHO05D006067 9.7e-84 314.7 346 48.8
Aqoxy2G00637 Aquilegia oxysepala HOM05D005592 ORTHO05D006067 1.7e-83 313.9 378 45.2
MELO3C002725.2 Cucumis melo HOM05D005592 ORTHO05D006067 2.8e-83 313.2 369 46.9
Lalb_Chr23g0272061 Lupinus albus HOM05D005592 ORTHO05D006067 2.8e-83 313.2 365 45.8
ECA232G3941 Erigeron canadensis HOM05D005592 ORTHO05D006067 8.2e-83 311.6 388 44.8
FvH4_7g26380 Fragaria vesca HOM05D005592 ORTHO05D006067 2.4e-82 310.1 374 46.5
DCAR_018065 Daucus carota HOM05D005592 ORTHO05D006067 1.2e-81 307.8 377 46.4
Sc10g0003140 Simmondsia chinensis HOM05D005592 ORTHO05D006067 1.2e-81 307.8 370 44.9
ATR1126G052 Amborella trichopoda HOM05D005592 ORTHO05D006067 5.9e-81 305.4 383 43.9
Prupe.2G267900 Prunus persica HOM05D005592 ORTHO05D006067 2.2e-80 303.5 379 45.4
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 1.1e-79 301.2 375 44.3
GSVIVG01032876001 Vitis vinifera HOM05D005592 ORTHO05D006067 1.9e-79 300.4 306 51.3
Lj1g0017160 Lotus japonicus HOM05D005592 ORTHO05D006067 5.5e-79 298.9 374 44.7
Aa31LG6G7910 Aethionema arabicum HOM05D005592 ORTHO05D006067 1.8e-77 293.9 368 43.2
AL1G47780 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 8.8e-77 291.6 377 43.8
Dinv21875 Davidia involucrata HOM05D005592 ORTHO05D006067 2.0e-76 290.4 321 50.2
Thhalv10006832m.g Eutrema salsugineum HOM05D005592 ORTHO05D006067 2.0e-76 290.4 369 43.4
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 2.6e-76 290.0 357 44.8
BcaB03g13702 Brassica carinata HOM05D005592 ORTHO05D006067 2.6e-76 290.0 377 42.4
A05p24340 Brassica napus HOM05D005592 ORTHO05D006067 2.6e-76 290.0 377 43.0
BraA05t21327Z Brassica rapa HOM05D005592 ORTHO05D006067 2.6e-76 290.0 377 43.0
BcaC05g27807 Brassica carinata HOM05D005592 ORTHO05D006067 7.5e-76 288.5 377 43.0
C05p38090 Brassica napus HOM05D005592 ORTHO05D006067 7.5e-76 288.5 377 43.0
BolC5t32537H Brassica oleracea HOM05D005592 ORTHO05D006067 7.5e-76 288.5 377 43.0
unitig_37.g12479 Utricularia gibba HOM05D005592 ORTHO05D006067 1.8e-74 283.9 358 43.6
AT1G33400 Arabidopsis thaliana HOM05D005592 ORTHO05D006067 1.2e-73 281.2 373 41.8
THA.LOC104813079 Tarenaya hassleriana HOM05D005592 ORTHO05D006067 2.9e-72 276.6 369 43.4
HPP92_022562 Vanilla planifolia HOM05D005592 ORTHO05D006067 5.0e-72 275.8 379 44.1
Lsat_1_v5_gn_9_60521 Lactuca sativa HOM05D005592 ORTHO05D006067 1.9e-71 273.9 365 43.6
Carub.0001s3159 Capsella rubella HOM05D005592 ORTHO05D006067 3.2e-71 273.1 369 42.0
Actinidia27253 Actinidia chinensis HOM05D005592 ORTHO05D006067 1.2e-70 271.2 271 53.1
Sp1g28850 Schrenkiella parvula HOM05D005592 ORTHO05D006067 2.1e-70 270.4 373 41.6
PGR083G1109 Punica granatum HOM05D005592 ORTHO05D006067 3.6e-70 269.6 378 40.5
Atru.chr12.227 Acer truncatum HOM05D005592 ORTHO05D006067 1.5e-68 264.2 302 45.7
Oeu008098.1 Olea europaea HOM05D005592 ORTHO05D006067 1.3e-67 261.2 362 42.8
Zm00001eb044040 Zea mays HOM05D005592 ORTHO05D006067 3.5e-65 253.1 375 39.5
Os10g0506800 Oryza sativa ssp. japonica HOM05D005592 ORTHO05D006067 1.9e-63 247.3 373 39.9
CARHR032830 Cardamine hirsuta HOM05D005592 ORTHO05D006067 3.5e-57 226.5 291 41.2
Phvul.009G040900 Phaseolus vulgaris HOM05D005592 ORTHO05D006067 5.0e-56 222.6 367 40.1
SHI08066 Sapria himalayana HOM05D005592 ORTHO05D006067 5.6e-55 219.2 364 37.6
Haze_17388 Corylus avellana HOM05D005592 ORTHO05D006067 1.0e-53 214.9 281 42.7
Cpa.g.sc41.43 Carica papaya HOM05D005592 ORTHO05D006067 1.4e-53 214.5 227 47.6
VMungo1309G2865 Vigna mungo HOM05D005592 ORTHO05D006067 4.0e-53 213.0 266 44.4
Pp3c22_7900 Physcomitrium patens HOM05D005592 ORTHO05D006067 3.0e-40 170.2 330 33.9
Eucgr.L02747 Eucalyptus grandis HOM05D005592 ORTHO05D006067 2.8e-38 163.7 176 47.2
SMO165G0048 Selaginella moellendorffii HOM05D005592 ORTHO05D006067 5.4e-34 149.4 370 30.8
AagrBONN_evm.TU.Sc2ySwM_344.3534 Anthoceros agrestis HOM05D005592 ORTHO05D006067 7.8e-33 145.6 317 32.5
SEGI_10878 Sequoiadendron giganteum HOM05D001800 ORTHO05D000007 4.3e-31 139.8 174 44.3
Mapoly0086s0022 Marchantia polymorpha HOM05D005592 ORTHO05D006067 4.9e-27 126.3 244 32.4
FAN06G1899 Fragaria x ananassa HOM05D005592 ORTHO05D006067 3.2e-26 123.6 127 52.0
SMO139G0018 Selaginella moellendorffii HOM05D005592 ORTHO05D006067 1.5e-20 104.8 360 28.1
VMungo1309G2057 Vigna mungo HOM05D005592 ORTHO05D006067 4.4e-20 103.2 134 44.8
CSS0024281 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 3.8e-19 100.1 70 68.6
CDE04G0667 Ceratophyllum demersum HOM05D005592 ORTHO05D006067 1.1e-18 98.6 110 47.3
Thecc.10G188600 Theobroma cacao HOM05D005592 ORTHO05D006067 1.2e-17 95.1 135 40.0
CSS0035505 Camellia sinensis var. sinensis HOM05D005592 ORTHO05D006067 1.6e-17 94.7 95 51.6
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.6e-17 94.7 52 82.7
AL8G14960 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 2.8e-14 84.0 83 53.0
Prupe.1G112400 Prunus persica HOM05D005592 ORTHO05D006067 1.1e-13 82.0 176 34.1
QL09p035929 Quercus lobata HOM05D004492 ORTHO05D005602 5.3e-13 79.7 327 22.6
Phvul.009G121500 Phaseolus vulgaris HOM05D004492 ORTHO05D005602 2.6e-12 77.4 324 21.6
VMungo1309G2182 Vigna mungo HOM05D004492 ORTHO05D005602 2.6e-12 77.4 324 21.6
Ciclev10001105m.g Citrus clementina HOM05D004492 ORTHO05D005602 1.3e-11 75.1 313 24.3
Lj1g0007587 Lotus japonicus HOM05D004492 ORTHO05D005602 1.7e-11 74.7 321 21.5
CDE11G0913 Ceratophyllum demersum HOM05D004492 ORTHO05D005602 1.1e-10 72.0 321 22.1
AL8G14970 Arabidopsis lyrata HOM05D005592 ORTHO05D006067 2.4e-10 70.9 73 52.1
Cpa.g.sc36.10 Carica papaya HOM05D004492 ORTHO05D005602 3.2e-10 70.5 324 21.0
PGR042G0918 Punica granatum HOM05D004492 ORTHO05D005602 4.2e-10 70.1 321 22.1
Psat5g133640 Pisum sativum HOM05D004492 ORTHO05D005602 5.4e-10 69.7 320 22.5
Prupe.1G503800 Prunus persica HOM05D004492 ORTHO05D005602 5.4e-10 69.7 321 22.7
CsaV3_5G023260 Cucumis sativus L. HOM05D004492 ORTHO05D005602 7.1e-10 69.3 311 23.8
Gorai.005G091200 Gossypium raimondii HOM05D004492 ORTHO05D005602 9.3e-10 68.9 320 21.6
Sed0009263 Sechium edule HOM05D004492 ORTHO05D005602 9.3e-10 68.9 313 24.0
Aqoxy5G02431 Aquilegia oxysepala HOM05D004492 ORTHO05D005602 1.2e-09 68.6 322 23.9
AUR62030552 Chenopodium quinoa HOM05D004492 ORTHO05D005602 1.2e-09 68.6 325 21.2
Ca_15216_v3 Cicer arietinum L. HOM05D004492 ORTHO05D005602 1.2e-09 68.6 320 23.1
TPR.G22341 Trifolium pratense HOM05D004492 ORTHO05D005602 2.1e-09 67.8 324 22.2
Ah.05g172340 Amaranthus hybridus HOM05D004492 ORTHO05D005602 2.7e-09 67.4 282 22.0
CSS0028158 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 2.7e-09 67.4 314 23.2
CSS0038302 Camellia sinensis var. sinensis HOM05D004492 ORTHO05D005602 2.7e-09 67.4 314 23.2
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 2.7e-09 67.4 292 26.4
Sopen06g020530 Solanum pennellii HOM05D004492 ORTHO05D005602 2.7e-09 67.4 307 23.1
CAN.G1396.8 Capsicum annuum HOM05D004492 ORTHO05D005602 3.5e-09 67.0 314 22.6
Eucgr.G00611 Eucalyptus grandis HOM05D004492 ORTHO05D005602 3.5e-09 67.0 108 32.4
Solyc06g060390.3 Solanum lycopersicum HOM05D004492 ORTHO05D005602 3.5e-09 67.0 307 23.1
GSVIVG01008928001 Vitis vinifera HOM05D004492 ORTHO05D005602 3.5e-09 67.0 319 21.9
Cpa.g.sc41.42 Carica papaya HOM05D005592 ORTHO05D006067 4.6e-09 66.6 62 54.8
PGSC0003DMG400017559 Solanum tuberosum HOM05D004492 ORTHO05D005602 4.6e-09 66.6 311 23.2
ClCG03G009360 Citrullus lanatus HOM05D004492 ORTHO05D005602 6.0e-09 66.2 101 31.7
ECA246G3183 Erigeron canadensis HOM05D004492 ORTHO05D005602 7.9e-09 65.9 267 25.8
Migut.C01175 Erythranthe guttata HOM05D004492 ORTHO05D005602 7.9e-09 65.9 320 20.9
Lalb_Chr08g0241631 Lupinus albus HOM05D004492 ORTHO05D005602 7.9e-09 65.9 325 19.7
TWI12G1231 Tripterygium wilfordii HOM05D004492 ORTHO05D005602 7.9e-09 65.9 317 22.1
Gohir.D02G081500 Gossypium hirsutum HOM05D004492 ORTHO05D005602 1.0e-08 65.5 318 21.4
Oeu047923.1 Olea europaea HOM05D004492 ORTHO05D005602 1.8e-08 64.7 320 21.2
DCAR_002659 Daucus carota HOM05D004492 ORTHO05D005602 3.0e-08 63.9 321 20.2
Sc23g0000850 Simmondsia chinensis HOM05D004492 ORTHO05D005602 3.0e-08 63.9 320 20.3
Migut.C01177 Erythranthe guttata HOM05D004492 ORTHO05D005602 5.1e-08 63.2 277 23.1
unitig_46.g18495 Utricularia gibba HOM05D004492 ORTHO05D005602 5.1e-08 63.2 102 34.3
MELO3C003048.2 Cucumis melo HOM05D004492 ORTHO05D005602 6.7e-08 62.8 101 30.7
Manes.18G073743 Manihot esculenta HOM05D004492 ORTHO05D005602 6.7e-08 62.8 307 20.8
AagrBONN_evm.TU.Sc2ySwM_344.3949 Anthoceros agrestis HOM05D004492 ORTHO05D005602 8.7e-08 62.4 315 23.5
Atru.chr13.1338 Acer truncatum HOM05D004492 ORTHO05D005602 1.1e-07 62.0 307 22.8
Atru.chr13.1381 Acer truncatum HOM05D004492 ORTHO05D005602 1.1e-07 62.0 307 22.8
Medtr3g073000 Medicago truncatula HOM05D004492 ORTHO05D005602 1.1e-07 62.0 316 22.2
Duzib093G1652 Durio zibethinus HOM05D004492 ORTHO05D005602 1.5e-07 61.6 306 21.2
MCO04G530 Micromonas commoda HOM05D005592 ORTHO05D006067 1.5e-07 61.6 76 42.1
Pp3c19_7630 Physcomitrium patens HOM05D004492 ORTHO05D005602 1.5e-07 61.6 372 20.4
Thhalv10022664m.g Eutrema salsugineum HOM05D004492 ORTHO05D005602 1.9e-07 61.2 97 33.0
Rhsim11G0066100 Rhododendron simsii HOM05D004492 ORTHO05D005602 1.9e-07 61.2 180 27.2
Haze_00500 Corylus avellana HOM05D004492 ORTHO05D005602 2.5e-07 60.8 308 22.4
RcHm_v2.0_Chr6g0294881 Rosa chinensis HOM05D004492 ORTHO05D005602 2.5e-07 60.8 106 30.2
MSTRG.25402 Avicennia marina HOM05D004492 ORTHO05D005602 5.6e-07 59.7 306 22.5
MD15G1356600 Malus domestica HOM05D004492 ORTHO05D005602 5.6e-07 59.7 102 30.4
Dinv27371 Davidia involucrata HOM05D004492 ORTHO05D005602 9.6e-07 58.9 181 27.1
Thecc.08G118900 Theobroma cacao HOM05D004492 ORTHO05D005602 9.6e-07 58.9 252 22.2
FAN15G1155 Fragaria x ananassa HOM05D004492 ORTHO05D005602 2.1e-06 57.8 118 28.8
Glyma.04G252800 Glycine max HOM05D004492 ORTHO05D005602 2.1e-06 57.8 122 27.9
Peaxi162Scf00051g00731 Petunia axillaris HOM05D004492 ORTHO05D005602 2.1e-06 57.8 102 33.3
CANSAT11G0049 Cannabis sativa HOM05D004492 ORTHO05D005602 2.8e-06 57.4 97 29.9
Lj7C323T6 Lonicera japonica HOM05D004492 ORTHO05D005602 2.8e-06 57.4 102 31.4
Potri.005G173100 Populus trichocarpa HOM05D004492 ORTHO05D005602 2.8e-06 57.4 100 29.0
Thecc.08G119400 Theobroma cacao HOM05D004492 ORTHO05D005602 2.8e-06 57.4 252 21.8
CiPaw.06G026300 Carya illinoinensis HOM05D004492 ORTHO05D005602 3.7e-06 57.0 313 23.0
FAN15G0234 Fragaria x ananassa HOM05D004492 ORTHO05D005602 3.7e-06 57.0 108 30.6
Nitab4.5_0000633g0160 Nicotiana tabacum HOM05D004492 ORTHO05D005602 3.7e-06 57.0 102 31.4
RcHm_v2.0_Chr6g0294891 Rosa chinensis HOM05D004492 ORTHO05D005602 4.8e-06 56.6 102 30.4
FAN24G0496 Fragaria x ananassa HOM05D004492 ORTHO05D005602 6.2e-06 56.2 102 31.4
SalBow7G0677 Salvia bowleyana HOM05D004492 ORTHO05D005602 6.2e-06 56.2 108 30.6
SalBow7G1607 Salvia bowleyana HOM05D004492 ORTHO05D005602 6.2e-06 56.2 108 30.6
Sabra05G0130600 Salix brachista HOM05D004492 ORTHO05D005602 8.1e-06 55.8 102 29.4


User provided reference genes

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