Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 0.0e+00 1462.6 739 100.0
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 0.0e+00 1127.1 745 80.4
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.5e-261 906.4 743 66.1
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 2.4e-259 899.0 744 66.1
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.3e-252 876.7 741 64.5
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 3.6e-252 875.2 740 63.4
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 5.4e-248 861.3 737 63.4
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.3e-244 850.1 745 62.8
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 9.0e-243 844.0 740 61.8
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 1.9e-240 836.3 740 60.9
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 6.0e-239 831.2 737 60.9
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.3e-238 830.1 739 61.6
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 3.0e-238 828.9 768 59.8
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 1.5e-237 826.6 743 61.1
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.9e-237 826.2 740 60.8
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 6.2e-236 821.2 739 60.6
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 4.0e-235 818.5 737 60.7
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.0e-234 816.2 740 60.7
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.9e-233 812.4 740 60.3
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 2.9e-233 812.4 740 60.4
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 8.4e-233 810.8 742 61.3
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 2.5e-232 809.3 742 59.8
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 9.3e-232 807.4 716 62.0
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 1.5e-229 800.0 748 60.6
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 2.1e-228 796.2 744 58.3
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 9.0e-227 790.8 561 76.3
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-226 790.4 561 76.1
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 2.2e-225 786.2 740 58.2
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.9e-224 783.1 742 58.5
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.6e-223 780.0 739 58.1
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 6.1e-223 778.1 843 54.4
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.3e-222 776.9 741 59.0
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 2.8e-220 769.2 737 56.4
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 6.3e-220 768.1 743 58.7
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 8.2e-220 767.7 740 56.9
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 8.2e-220 767.7 735 58.2
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.2e-218 763.8 706 59.6
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.1e-216 757.3 740 56.5
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-216 756.9 748 56.7
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 2.3e-214 749.6 739 55.8
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.7e-212 743.4 766 55.7
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.2e-210 737.3 698 58.7
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.5e-210 736.9 744 55.1
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 7.9e-207 724.5 628 64.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 2.6e-202 709.5 702 56.1
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.7e-201 706.8 741 54.8
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 2.2e-201 706.4 627 61.6
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.6e-199 699.1 742 54.6
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 1.0e-190 671.0 645 57.1
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 2.3e-190 669.8 735 52.4
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 6.3e-188 661.8 741 52.5
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 2.5e-184 649.8 595 59.0
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.6e-183 646.0 750 51.6
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.4e-181 639.4 770 50.4
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.4e-181 639.0 770 50.3
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.4e-179 634.0 763 50.5
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.9e-176 623.6 740 51.6
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.0e-169 601.3 549 61.7
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 3.3e-168 596.3 529 62.4
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 3.6e-167 592.8 796 46.9
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.7e-161 573.9 749 44.1
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 1.3e-156 557.8 564 57.1
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.3e-156 557.8 476 63.4
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 6.0e-154 548.9 601 54.1
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.7e-153 547.4 531 58.2
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 4.3e-152 542.7 533 58.2
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 9.5e-152 541.6 539 58.4
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 1.4e-150 537.7 395 70.6
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 6.8e-150 535.4 536 57.6
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.4e-147 525.8 507 58.2
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-145 521.2 507 58.2
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 1.1e-144 518.1 560 53.2
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.5e-144 516.9 558 53.6
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 5.6e-144 515.8 499 58.3
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 4.7e-143 512.7 483 59.2
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 2.1e-138 497.3 532 54.9
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 3.2e-123 446.8 744 38.7
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 7.9e-122 442.2 494 51.0
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 6.7e-121 439.1 347 64.6
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.3e-113 414.8 743 37.1
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.3e-104 383.6 297 67.0
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 2.0e-101 374.4 289 66.8
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 7.9e-98 362.5 735 34.0
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 8.8e-81 305.8 299 58.2
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 4.5e-77 293.5 167 86.8
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.6e-74 285.0 315 53.0
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 1.2e-72 278.9 174 77.0
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 9.8e-72 275.8 175 74.9
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.7e-71 275.0 267 61.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 1.4e-70 271.9 175 74.9
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.9e-67 261.5 393 42.5
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 9.4e-67 259.2 188 67.0
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.4e-65 255.4 180 68.9
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 4.0e-65 253.8 197 64.0
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 6.8e-65 253.1 185 68.6
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.0e-64 251.5 174 69.0
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 2.2e-63 248.1 174 69.0
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 6.3e-63 246.5 178 66.9
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.3e-60 238.0 214 62.1
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 6.6e-60 236.5 179 64.2
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 8.6e-60 236.1 360 42.5
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 8.9e-57 226.1 186 59.7
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.2e-50 205.7 115 80.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 2.4e-46 191.4 177 54.8
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 5.4e-46 190.3 175 57.1
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 6.2e-42 176.8 133 68.4
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 6.2e-42 176.8 127 68.5
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 8.1e-42 176.4 133 68.4
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.4e-41 175.6 130 66.9
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 2.6e-40 171.4 130 63.8
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 4.4e-40 170.6 176 56.8
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 4.1e-38 164.1 81 93.8
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 4.1e-38 164.1 81 93.8
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.5e-37 161.0 87 85.1
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 5.6e-35 153.7 124 66.1
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 9.5e-35 152.9 925 22.6
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 2.6e-32 144.8 114 68.4
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.3e-31 142.5 79 86.1
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 4.1e-30 137.5 80 82.5
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.6e-29 135.6 137 49.6
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 9.6e-27 126.3 213 45.1
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.8e-26 124.8 65 90.8
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.1e-25 122.9 71 81.7
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.4e-25 121.7 205 33.2
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 5.3e-17 94.0 103 47.6
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.2e-16 92.8 58 67.2
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 4.2e-14 84.3 70 62.9
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 3.5e-13 81.3 56 64.3
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-09 69.7 51 58.8
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 9.0e-09 66.6 88 45.5
CSS0045499 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.0e-08 65.5 39 79.5
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 2.6e-08 65.1 88 44.3
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 3.4e-08 64.7 88 44.3
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.5e-08 64.3 39 79.5
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 5.8e-08 63.9 41 70.7
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.7e-07 62.4 39 76.9
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 1.7e-07 62.4 57 54.4
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 2.2e-07 62.0 34 82.4
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 3.8e-07 61.2 40 75.0
vmacro06124 Vaccinium macrocarpon HOM05D006783 ORTHO05D008330 1.4e-06 59.3 28 92.9
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 4.2e-06 57.8 39 71.8


User provided reference genes

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