Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 0.0e+00 1302.3 712 100.0
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 7.8e-119 432.2 995 39.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.1e-80 305.4 846 36.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.8e-75 288.1 828 36.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.7e-70 269.6 860 35.1
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.6e-69 267.7 864 35.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 3.3e-32 144.4 754 28.4
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.3e-32 144.4 768 29.0
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.8e-30 138.7 133 63.9
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 4.0e-30 137.5 199 46.2
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.2e-29 136.0 756 27.1
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.7e-28 132.1 744 28.6
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.7e-28 132.1 280 37.9
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 6.4e-28 130.2 734 27.1
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 8.3e-28 129.8 755 29.0
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.4e-27 128.3 800 28.0
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 5.4e-27 127.1 798 26.3
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 9.2e-27 126.3 772 27.1
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.1e-26 125.2 415 33.3
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.0e-25 122.9 821 27.0
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.7e-25 122.1 201 47.3
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.3e-25 121.7 253 41.5
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 3.0e-25 121.3 445 31.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 3.9e-25 120.9 285 36.5
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 3.9e-25 120.9 253 41.5
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.9e-25 120.9 807 26.5
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 6.6e-25 120.2 285 38.2
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.5e-24 118.2 785 26.8
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.6e-23 115.5 832 27.5
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 2.8e-23 114.8 828 27.3
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.6e-23 114.4 458 29.5
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 8.1e-23 113.2 315 36.5
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.1e-22 112.8 273 35.5
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.4e-22 112.5 279 35.5
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.8e-22 112.1 229 38.4
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.3e-22 111.7 775 25.8
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 4.0e-22 110.9 389 32.1
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 5.2e-22 110.5 264 34.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.2e-22 110.5 255 40.8
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.5e-21 109.0 272 32.0
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-21 108.6 403 30.8
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 4.4e-21 107.5 382 30.4
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.8e-21 107.1 304 32.2
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 5.8e-21 107.1 184 40.2
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 5.8e-21 107.1 227 37.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 7.6e-21 106.7 180 40.0
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 7.6e-21 106.7 305 34.4
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.9e-20 104.8 753 28.3
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 3.7e-20 104.4 784 27.7
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 3.7e-20 104.4 236 38.6
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 6.4e-20 103.6 398 30.7
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 6.4e-20 103.6 255 33.3
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 6.4e-20 103.6 234 36.8
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 8.3e-20 103.2 77 72.7
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 8.3e-20 103.2 293 34.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 8.3e-20 103.2 363 30.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.4e-19 101.7 443 30.5
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.2e-19 101.3 545 28.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 4.1e-19 100.9 394 29.4
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 5.4e-19 100.5 423 29.8
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 9.2e-19 99.8 827 27.1
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 9.2e-19 99.8 123 48.0
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.2e-18 99.4 247 34.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.2e-18 99.4 145 46.9
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.2e-18 99.4 280 34.6
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 1.2e-18 99.4 310 32.9
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.1e-18 98.6 223 34.1
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 3.5e-18 97.8 156 50.0
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.5e-18 97.8 415 28.4
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 4.6e-18 97.4 841 24.6
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 6.0e-18 97.1 443 28.7
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.0e-17 96.3 536 27.4
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.0e-17 96.3 510 25.9
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.0e-17 96.3 113 53.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.3e-17 95.9 418 29.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.3e-17 95.9 448 29.7
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 1.7e-17 95.5 415 29.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.3e-17 95.1 337 30.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.9e-17 94.4 420 30.0
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 3.9e-17 94.4 221 33.9
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 5.1e-17 94.0 404 28.2
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 5.1e-17 94.0 450 30.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 8.6e-17 93.2 529 29.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-16 92.8 169 36.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.1e-16 92.8 169 36.1
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.1e-16 92.8 124 44.4
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.9e-16 92.0 225 33.3
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.9e-16 92.0 410 30.7
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.5e-16 91.7 812 26.8
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.3e-16 91.3 422 29.4
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.3e-16 91.3 787 25.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 4.3e-16 90.9 424 27.1
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 9.6e-16 89.7 103 50.5
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.6e-15 89.0 782 26.0
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-15 88.6 238 31.9
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 2.1e-15 88.6 238 31.9
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 3.6e-15 87.8 238 31.5
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.7e-15 87.4 329 30.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 6.2e-15 87.0 326 29.1
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-14 86.3 786 26.0
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-14 85.5 585 24.3
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.1e-14 84.7 332 30.1
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 4.0e-14 84.3 596 25.2
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.2e-14 84.0 442 28.7
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 6.8e-14 83.6 453 28.3
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 8.9e-14 83.2 528 25.2
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.0e-13 82.0 327 33.6
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-13 81.6 377 26.3
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-13 81.6 377 26.3
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.6e-13 81.6 291 32.3
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 4.4e-13 80.9 311 30.2
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 5.8e-13 80.5 760 26.1
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 7.6e-13 80.1 402 29.4
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.3e-12 79.3 790 24.6
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-12 78.6 540 25.2
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 3.8e-12 77.8 241 30.7
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 6.4e-12 77.0 413 29.5
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 8.4e-12 76.6 299 30.1
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.1e-11 76.3 227 31.3
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 4.2e-11 74.3 229 30.1
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 7.1e-11 73.6 455 25.3
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 9.3e-11 73.2 322 31.4
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.6e-10 72.4 228 30.7
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.1e-10 72.0 354 26.8
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.5e-10 71.2 337 28.5
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 4.6e-10 70.9 242 30.6
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 6.0e-10 70.5 97 48.5
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 7.8e-10 70.1 373 29.2
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.7e-09 68.9 554 23.8
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.3e-09 68.6 59 57.6
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.9e-09 67.8 312 31.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 5.1e-09 67.4 751 24.2
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 8.7e-09 66.6 106 43.4
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.9e-08 65.5 356 27.5
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 1.9e-08 65.5 305 28.5
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.5e-08 65.1 545 26.6
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.3e-08 64.7 366 29.2
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 4.3e-08 64.3 45 66.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 7.3e-08 63.5 792 24.0
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 1.3e-07 62.8 779 23.5
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.3e-07 62.8 39 74.4
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.6e-07 62.4 46 63.0
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.6e-07 62.4 44 65.9
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 1.6e-07 62.4 61 50.8
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 3.6e-07 61.2 38 73.7
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 3.6e-07 61.2 38 73.7
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.6e-07 61.2 77 45.5
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 6.2e-07 60.5 165 32.1
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 6.2e-07 60.5 43 65.1
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 8.1e-07 60.1 325 27.7
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 1.1e-06 59.7 307 26.1
SMO119G0240 Selaginella moellendorffii HOM05D019055 ORTHO05D018353 1.1e-06 59.7 68 51.5
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.4e-06 59.3 762 23.0
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.4e-06 59.3 78 47.4
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 3.1e-06 58.2 36 69.4
COL.COLO4_29877 Corchorus olitorius HOM05D013130 ORTHO05D022454 3.1e-06 58.2 118 34.7
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.3e-06 57.4 139 33.1


User provided reference genes

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