Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06453 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 0.0e+00 2030.0 1012 100.0
Rhsim03G0216600 Rhododendron simsii HOM05D006657 ORTHO05D005964 0.0e+00 1316.6 1012 70.1
Actinidia34275 Actinidia chinensis HOM05D006657 ORTHO05D005964 3.1e-246 855.9 1041 52.2
CSS0010102 Camellia sinensis var. sinensis HOM05D006657 ORTHO05D005964 1.2e-245 854.0 1003 51.5
Dinv17292 Davidia involucrata HOM05D006657 ORTHO05D005964 4.0e-225 785.8 1139 45.0
Actinidia08706 Actinidia chinensis HOM05D006657 ORTHO05D005964 6.4e-199 698.7 947 46.9
Dinv29204 Davidia involucrata HOM05D006657 ORTHO05D005964 1.5e-187 661.0 1007 43.7
Rhsim09G0210400 Rhododendron simsii HOM05D006657 ORTHO05D005964 7.8e-181 638.6 1081 42.4
vmacro10166 Vaccinium macrocarpon HOM05D006657 ORTHO05D005964 9.3e-166 588.6 1128 39.6
GSVIVG01038660001 Vitis vinifera HOM05D006657 ORTHO05D005964 2.6e-136 490.7 1194 34.3
TAR375G0071 Trochodendron aralioides HOM05D006657 ORTHO05D005964 6.3e-106 389.8 1035 33.8
TAR374G0213 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.2e-105 387.5 953 34.1
QL09p006779 Quercus lobata HOM05D006657 ORTHO05D005964 2.3e-103 381.3 988 34.4
Haze_00307 Corylus avellana HOM05D006657 ORTHO05D005964 5.6e-102 376.7 991 34.1
Cfa016147 Carpinus fangiana HOM05D006657 ORTHO05D005964 7.3e-102 376.3 1226 30.9
Oeu055400.1 Olea europaea HOM05D006657 ORTHO05D005964 3.0e-95 354.4 1149 31.2
Manes.01G044100 Manihot esculenta HOM05D006657 ORTHO05D005964 2.9e-90 337.8 973 33.6
DCAR_008990 Daucus carota HOM05D006657 ORTHO05D005964 8.3e-90 336.3 986 30.2
Prupe.2G320100 Prunus persica HOM05D006657 ORTHO05D005964 2.3e-84 318.2 997 31.3
Ciclev10018632m.g Citrus clementina HOM05D006657 ORTHO05D005964 2.2e-82 311.6 1132 30.6
Nitab4.5_0000021g0080 Nicotiana tabacum HOM05D006657 ORTHO05D005964 3.2e-81 307.8 988 32.1
Cc07_g20200 Coffea canephora HOM05D006657 ORTHO05D005964 5.1e-79 300.4 1025 31.1
Nitab4.5_0006821g0010 Nicotiana tabacum HOM05D006657 ORTHO05D005964 7.3e-78 296.6 1004 31.1
FAN03G1526 Fragaria x ananassa HOM05D006657 ORTHO05D005964 3.6e-77 294.3 1006 30.7
CiPaw.05G206100 Carya illinoinensis HOM05D006657 ORTHO05D005964 6.2e-77 293.5 991 30.6
RcHm_v2.0_Chr1g0383041 Rosa chinensis HOM05D006657 ORTHO05D005964 1.1e-76 292.7 1044 30.3
FAN10G1617 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.4e-76 291.6 1006 30.5
FvH4_7g33030 Fragaria vesca HOM05D006657 ORTHO05D005964 1.5e-75 288.9 1002 30.3
FAN10G2847 Fragaria x ananassa HOM05D006657 ORTHO05D005964 2.0e-75 288.5 1005 30.1
Peaxi162Scf00912g00114 Petunia axillaris HOM05D006657 ORTHO05D005964 7.6e-75 286.6 980 31.5
MD01G1229500 Malus domestica HOM05D006657 ORTHO05D005964 4.9e-74 283.9 975 29.1
Sopen03g021870 Solanum pennellii HOM05D006657 ORTHO05D005964 1.1e-73 282.7 964 30.3
CANSAT21G0900 Cannabis sativa HOM05D006657 ORTHO05D005964 2.4e-73 281.6 993 32.0
Solyc03g080140.3 Solanum lycopersicum HOM05D006657 ORTHO05D005964 1.2e-72 279.3 960 30.5
MD07G1301500 Malus domestica HOM05D006657 ORTHO05D005964 1.5e-70 272.3 938 29.2
Sabra15G0002400 Salix brachista HOM05D006657 ORTHO05D005964 5.6e-70 270.4 981 30.4
PGSC0003DMG400000558 Solanum tuberosum HOM05D006657 ORTHO05D005964 9.6e-70 269.6 977 30.3
CAN.G303.40 Capsicum annuum HOM05D006657 ORTHO05D005964 2.4e-68 265.0 964 29.1
Sabra12G0004100 Salix brachista HOM05D006657 ORTHO05D005964 2.4e-68 265.0 974 29.2
Nn1g05264 Nelumbo nucifera HOM05D006657 ORTHO05D005964 3.1e-68 264.6 1153 28.2
DCAR_020382 Daucus carota HOM05D006657 ORTHO05D005964 1.5e-67 262.3 1024 29.1
Atru.chr12.2479 Acer truncatum HOM05D006657 ORTHO05D005964 9.9e-67 259.6 789 30.7
Potri.015G003700 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.8e-66 257.7 973 28.8
Potri.012G007000 Populus trichocarpa HOM05D006657 ORTHO05D005964 1.2e-64 252.7 969 30.0
Migut.F00140 Erythranthe guttata HOM05D006657 ORTHO05D005964 1.0e-63 249.6 1125 26.6
Duzib205G0597 Durio zibethinus HOM05D006657 ORTHO05D005964 1.1e-62 246.1 979 29.5
Sabra12G0008600 Salix brachista HOM05D006657 ORTHO05D005964 5.6e-62 243.8 984 28.0
Duzib084G0166 Durio zibethinus HOM05D006657 ORTHO05D005964 2.8e-61 241.5 950 29.2
Thecc.03G210000 Theobroma cacao HOM05D006657 ORTHO05D005964 2.8e-61 241.5 973 29.2
Duzib068G0081 Durio zibethinus HOM05D006657 ORTHO05D005964 1.4e-60 239.2 955 29.0
TWI14G0251 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 5.8e-59 233.8 1015 29.4
TWI23G1261 Tripterygium wilfordii HOM05D006657 ORTHO05D005964 2.4e-57 228.4 1019 29.0
SalBow4G2342 Salvia bowleyana HOM05D006657 ORTHO05D005964 1.6e-56 225.7 981 28.6
Lj1A1029T62 Lonicera japonica HOM05D006657 ORTHO05D005964 2.1e-56 225.3 470 37.7
MSTRG.26967 Avicennia marina HOM05D006657 ORTHO05D005964 3.0e-55 221.5 1173 25.8
SalBow4G2934 Salvia bowleyana HOM05D006657 ORTHO05D005964 3.9e-55 221.1 981 28.4
COL.COLO4_14382 Corchorus olitorius HOM05D006657 ORTHO05D005964 1.4e-52 212.6 972 27.5
TAR629G2606 Trochodendron aralioides HOM05D006657 ORTHO05D005964 2.4e-52 211.8 863 28.7
Gorai.004G125800 Gossypium raimondii HOM05D006657 ORTHO05D005964 6.9e-52 210.3 947 28.3
Gohir.D08G117100 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.9e-50 204.9 950 27.8
CsaV3_4G008600 Cucumis sativus L. HOM05D006657 ORTHO05D005964 3.8e-50 204.5 959 27.1
SGA_v2.0_scaffold44G16853 Striga asiatica HOM05D006657 ORTHO05D005964 8.4e-50 203.4 1095 26.0
Sed0019147 Sechium edule HOM05D006657 ORTHO05D005964 7.9e-48 196.8 962 27.8
arahy.Tifrunner.gnm1.ann1.UMZ78C Arachis hypogaea HOM05D006657 ORTHO05D005964 1.7e-42 179.1 982 27.2
Glyma.06G138000 Glycine max HOM05D006657 ORTHO05D005964 1.1e-41 176.4 631 30.3
Lalb_Chr11g0067471 Lupinus albus HOM05D006657 ORTHO05D005964 1.4e-41 176.0 952 25.8
arahy.Tifrunner.gnm1.ann1.UB23H3 Arachis hypogaea HOM05D006657 ORTHO05D005964 3.5e-40 171.4 983 27.6
Sc13g0010540 Simmondsia chinensis HOM05D006657 ORTHO05D005964 6.1e-40 170.6 950 24.6
Aqoxy5G04358 Aquilegia oxysepala HOM05D006657 ORTHO05D005964 1.8e-39 169.1 990 25.9
SGA_v2.0_scaffold18G08476 Striga asiatica HOM05D006657 ORTHO05D005964 1.5e-38 166.0 1055 26.2
Oeu029332.2 Olea europaea HOM05D006657 ORTHO05D005964 1.9e-38 165.6 517 31.7
Lalb_Chr23g0272001 Lupinus albus HOM05D006657 ORTHO05D005964 5.7e-38 164.1 1010 24.3
Lj1g0002697 Lotus japonicus HOM05D006657 ORTHO05D005964 1.3e-37 162.9 614 28.8
Lsat_1_v5_gn_2_134840 Lactuca sativa HOM05D006657 ORTHO05D005964 9.0e-36 156.8 978 25.9
Psat5g071280 Pisum sativum HOM05D006657 ORTHO05D005964 1.2e-35 156.4 593 28.0
PGR042G1854 Punica granatum HOM05D006657 ORTHO05D005964 1.2e-35 156.4 1026 25.8
Eucgr.K00044 Eucalyptus grandis HOM05D006657 ORTHO05D005964 2.2e-34 152.1 641 26.7
CiPaw.06G040100 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.1e-33 149.8 282 37.2
FAN01G2018 Fragaria x ananassa HOM05D006657 ORTHO05D005964 1.9e-33 149.1 286 36.0
Ca_16789_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 2.1e-32 145.6 950 26.3
Ca_16805_v3 Cicer arietinum L. HOM05D006657 ORTHO05D005964 2.1e-32 145.6 950 26.3
Glyma.04G227100 Glycine max HOM05D006657 ORTHO05D005964 3.6e-32 144.8 989 26.3
PSO170G0737 Papaver somniferum HOM05D006657 ORTHO05D005964 5.1e-31 141.0 1033 24.9
MBI04_g37612_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.5e-30 138.7 997 26.1
EL10Ac3g05155 Beta vulgaris HOM05D006657 ORTHO05D005964 4.3e-30 137.9 935 25.7
TPR.G33400 Trifolium pratense HOM05D006657 ORTHO05D005964 7.4e-30 137.1 1014 24.3
MBI04_g41177_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 2.2e-29 135.6 701 28.0
PSO782G1897 Papaver somniferum HOM05D006657 ORTHO05D005964 1.4e-28 132.9 1044 25.0
AUR62005972 Chenopodium quinoa HOM05D006657 ORTHO05D005964 5.3e-28 131.0 921 26.1
Potri.001G452300 Populus trichocarpa HOM05D011672 ORTHO05D011012 2.0e-27 129.0 472 27.5
Cpa.g.sc3.164 Carica papaya HOM05D006657 ORTHO05D005964 2.6e-27 128.6 887 25.3
Hund23980 Selenicereus undatus HOM05D006657 ORTHO05D005964 3.4e-27 128.3 1008 22.6
AUR62028098 Chenopodium quinoa HOM05D006657 ORTHO05D005964 7.7e-27 127.1 915 25.2
Gohir.A08G105800 Gossypium hirsutum HOM05D006657 ORTHO05D005964 2.2e-26 125.6 835 25.1
TAR629G3494 Trochodendron aralioides HOM05D006657 ORTHO05D005964 3.8e-26 124.8 182 43.4
Medtr3g093000 Medicago truncatula HOM05D006657 ORTHO05D005964 1.4e-25 122.9 665 26.3
QL02p027097 Quercus lobata HOM05D013249 ORTHO05D011012 3.2e-25 121.7 915 23.9
Sabra16G0305400 Salix brachista HOM05D011672 ORTHO05D011012 1.0e-23 116.7 454 28.0
ECA233G2144 Erigeron canadensis HOM05D006657 ORTHO05D005964 8.8e-23 113.6 982 24.1
VMungo1309G0886 Vigna mungo HOM05D006657 ORTHO05D005964 1.3e-21 109.8 942 22.9
Phvul.009G038600 Phaseolus vulgaris HOM05D006657 ORTHO05D005964 8.2e-21 107.1 286 32.5
Ah.13g070870 Amaranthus hybridus HOM05D006657 ORTHO05D005964 2.0e-19 102.4 1026 24.3
Cc00_g14340 Coffea canephora HOM05D006657 ORTHO05D005964 2.2e-18 99.0 166 37.3
Eucgr.A00967 Eucalyptus grandis HOM05D006657 ORTHO05D005964 1.5e-17 96.3 351 28.5
Cpa.g.sc9.388 Carica papaya HOM05D006657 ORTHO05D005964 3.2e-17 95.1 147 42.2
HanXRQChr08g0226001 Helianthus annuus HOM05D006657 ORTHO05D005964 7.2e-17 94.0 303 30.7
MBI12_g20086_MAGBIO Magnolia biondii HOM05D006657 ORTHO05D005964 1.2e-16 93.2 1308 22.2
unitig_0.g2439 Utricularia gibba HOM05D006657 ORTHO05D005964 2.7e-16 92.0 396 25.5
Ah.07g204540 Amaranthus hybridus HOM05D006657 ORTHO05D005964 4.0e-15 88.2 1050 23.4
Sabra11G0134500 Salix brachista HOM05D011672 ORTHO05D011012 5.7e-14 84.3 285 27.0
Potri.011G149601 Populus trichocarpa HOM05D011672 ORTHO05D011012 7.5e-14 84.0 306 27.1
THA.LOC104799674 Tarenaya hassleriana HOM05D009821 ORTHO05D005964 7.5e-14 84.0 263 28.9
Aa31LG11G3790 Aethionema arabicum HOM05D009821 ORTHO05D005964 9.7e-14 83.6 271 28.4
Prupe.5G135100 Prunus persica HOM05D013249 ORTHO05D011012 9.7e-14 83.6 728 23.6
CARHR158490 Cardamine hirsuta HOM05D009821 ORTHO05D005964 1.3e-13 83.2 276 29.0
MD06G1124500 Malus domestica HOM05D013249 ORTHO05D011012 1.3e-13 83.2 316 27.8
ATR0579G071 Amborella trichopoda HOM05D006657 ORTHO05D005964 3.7e-13 81.6 299 26.8
Eucgr.K00452 Eucalyptus grandis HOM05D006657 ORTHO05D005964 6.3e-13 80.9 276 30.1
Thecc.03G215600 Theobroma cacao HOM05D011672 ORTHO05D011012 6.3e-13 80.9 487 24.4
BcaB05g23119 Brassica carinata HOM05D009821 ORTHO05D005964 1.4e-12 79.7 212 31.1
TWI81G0792 Tripterygium wilfordii HOM05D011672 ORTHO05D011012 4.1e-12 78.2 462 23.8
FAN13G1375 Fragaria x ananassa HOM05D013249 ORTHO05D011012 1.2e-11 76.6 199 28.6
BcaC01g02410 Brassica carinata HOM05D009821 ORTHO05D005964 1.6e-11 76.3 253 29.6
C03p65560 Brassica napus HOM05D009821 ORTHO05D005964 1.6e-11 76.3 253 29.6
BolC3t18811H Brassica oleracea HOM05D009821 ORTHO05D005964 1.6e-11 76.3 253 29.6
A01p24720 Brassica napus HOM05D009821 ORTHO05D005964 2.0e-11 75.9 265 26.8
BraA01t02384Z Brassica rapa HOM05D009821 ORTHO05D005964 2.0e-11 75.9 265 26.8
FvH4_5g10390 Fragaria vesca HOM05D013249 ORTHO05D011012 2.7e-11 75.5 199 29.6
BolC8t50069H Brassica oleracea HOM05D009821 ORTHO05D005964 4.5e-11 74.7 229 29.7
AT3G49490 Arabidopsis thaliana HOM05D009821 ORTHO05D005964 5.9e-11 74.3 235 28.9
BcaC07g39413 Brassica carinata HOM05D009821 ORTHO05D005964 7.7e-11 73.9 229 29.7
FAN08G0662 Fragaria x ananassa HOM05D013249 ORTHO05D011012 7.7e-11 73.9 199 29.1
C08p24510 Brassica napus HOM05D009821 ORTHO05D005964 1.0e-10 73.6 229 29.7
Haze_09217 Corylus avellana HOM05D013249 ORTHO05D011012 1.0e-10 73.6 943 22.5
A06p28240 Brassica napus HOM05D009821 ORTHO05D005964 1.3e-10 73.2 239 28.0
BraA06t25767Z Brassica rapa HOM05D009821 ORTHO05D005964 1.3e-10 73.2 239 28.0
CiPaw.06G039800 Carya illinoinensis HOM05D006657 ORTHO05D005964 1.3e-10 73.2 188 36.2
RcHm_v2.0_Chr7g0187831 Rosa chinensis HOM05D013249 ORTHO05D011012 1.3e-10 73.2 199 29.1
Phvul.006G174000 Phaseolus vulgaris HOM05D013241 ORTHO05D011012 1.7e-10 72.8 503 23.5
FAN04G0229 Fragaria x ananassa HOM05D013249 ORTHO05D011012 2.2e-10 72.4 199 28.6
CiPaw.12G074500 Carya illinoinensis HOM05D011672 ORTHO05D011012 2.9e-10 72.0 310 25.5
A06p18270 Brassica napus HOM05D009821 ORTHO05D005964 3.8e-10 71.6 202 30.2
BraA06t24910Z Brassica rapa HOM05D009821 ORTHO05D005964 3.8e-10 71.6 202 30.2
FAN18G3072 Fragaria x ananassa HOM05D013249 ORTHO05D011012 3.8e-10 71.6 199 29.1
CDE02G0079 Ceratophyllum demersum HOM05D006657 ORTHO05D005964 5.0e-10 71.2 1025 22.5
AL5G29280 Arabidopsis lyrata HOM05D009821 ORTHO05D005964 6.5e-10 70.9 239 28.0
VMungo0540G2099 Vigna mungo HOM05D013241 ORTHO05D011012 8.5e-10 70.5 444 24.1
Carub.0005s1582 Capsella rubella HOM05D009821 ORTHO05D005964 1.9e-09 69.3 274 26.6
Atru.chr12.2480 Acer truncatum HOM05D006657 ORTHO05D005964 3.2e-09 68.6 249 30.9
BcaC09g49952 Brassica carinata HOM05D009821 ORTHO05D005964 3.2e-09 68.6 307 28.0
BcaB02g09591 Brassica carinata HOM05D009821 ORTHO05D005964 4.2e-09 68.2 368 25.0
BolC1t03016H Brassica oleracea HOM05D009821 ORTHO05D005964 7.2e-09 67.4 307 28.0
Duzib068G0278 Durio zibethinus HOM05D011672 ORTHO05D011012 7.2e-09 67.4 900 23.0
Lj1P1029T48 Lonicera japonica HOM05D006657 ORTHO05D005964 2.1e-08 65.9 133 33.1
Potri.002G230100 Populus trichocarpa HOM05D006657 ORTHO05D005964 2.1e-08 65.9 77 46.8
TPR.G4557 Trifolium pratense HOM05D013241 ORTHO05D011012 2.1e-08 65.9 465 21.7
Glyma.13G227600 Glycine max HOM05D013241 ORTHO05D011012 2.7e-08 65.5 491 24.6
Sp5g12600 Schrenkiella parvula HOM05D009821 ORTHO05D005964 2.7e-08 65.5 243 28.4
arahy.Tifrunner.gnm1.ann1.62N0H4 Arachis hypogaea HOM05D000074 ORTHO05D011012 3.6e-08 65.1 481 21.0
arahy.Tifrunner.gnm1.ann1.69Z0CE Arachis hypogaea HOM05D013241 ORTHO05D011012 3.6e-08 65.1 481 21.0
BcaB01g00702 Brassica carinata HOM05D009821 ORTHO05D005964 3.6e-08 65.1 267 28.8
Potri.003G206701 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.6e-08 65.1 77 45.5
C01p30840 Brassica napus HOM05D009821 ORTHO05D005964 6.1e-08 64.3 323 26.9
Potri.004G080501 Populus trichocarpa HOM05D006657 ORTHO05D005964 3.0e-07 62.0 77 45.5
Ca_00458_v3 Cicer arietinum L. HOM05D013241 ORTHO05D011012 1.5e-06 59.7 482 21.2
MELO3C024862.2 Cucumis melo HOM05D006657 ORTHO05D005964 2.0e-06 59.3 267 27.0
Medtr2g016640 Medicago truncatula HOM05D013241 ORTHO05D011012 3.4e-06 58.5 522 21.5
Eucgr.L00346 Eucalyptus grandis HOM05D013249 ORTHO05D011012 4.4e-06 58.2 200 27.5
Lalb_Chr18g0054711 Lupinus albus HOM05D013241 ORTHO05D011012 5.7e-06 57.8 425 23.1


User provided reference genes

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