Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 0.0e+00 2226.4 1106 100.0
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 0.0e+00 1525.8 1136 69.0
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 0.0e+00 1257.7 1141 57.9
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 0.0e+00 1239.9 1143 57.6
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 0.0e+00 1234.6 1114 62.2
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 0.0e+00 1079.7 1142 51.2
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 3.8e-311 1071.6 1091 53.0
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 7.8e-291 1004.2 1131 48.5
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 1.4e-268 930.2 1123 47.3
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 1.8e-263 913.3 1124 45.9
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 4.0e-263 912.1 1115 47.3
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 1.4e-260 903.7 1120 46.6
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.5e-257 893.6 1127 46.5
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.2e-254 884.0 1115 45.6
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.9e-252 876.7 1117 44.8
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 1.9e-249 866.7 1114 46.1
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.9e-249 866.7 1123 46.4
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.3e-248 864.0 1114 43.4
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 1.3e-245 854.0 1126 44.1
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 2.7e-243 846.3 1124 43.8
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.0e-242 844.3 1122 44.6
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 1.8e-242 843.6 1118 43.8
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 3.3e-241 839.3 1122 44.4
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 8.2e-240 834.7 1118 43.6
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 2.0e-238 830.1 1123 44.7
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 6.5e-237 825.1 1061 44.4
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.1e-236 824.3 1097 44.5
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 5.1e-234 815.5 1114 44.1
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 3.7e-232 809.3 1116 43.0
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 6.9e-231 805.1 1118 43.1
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 1.5e-230 803.9 1118 43.0
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.9e-230 802.0 1116 43.1
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 2.2e-229 800.0 1118 42.9
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 4.2e-228 795.8 1118 43.2
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 7.4e-225 785.0 1001 43.7
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 7.4e-225 785.0 1128 41.8
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 6.9e-223 778.5 1128 41.1
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 2.0e-222 776.9 1121 42.9
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 1.0e-221 774.6 1121 41.6
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.0e-218 763.1 1059 44.6
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 5.7e-217 758.8 1121 41.5
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.4e-215 753.4 1135 39.4
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 1.6e-211 740.7 1047 42.9
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 8.2e-208 728.4 1115 39.6
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 4.2e-204 716.1 1111 40.4
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.2e-203 714.5 1117 38.9
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 2.7e-203 713.4 1116 38.7
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 2.3e-202 710.3 1121 41.4
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.3e-201 706.4 1069 40.7
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 5.7e-201 705.7 1118 39.0
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 7.5e-201 705.3 1109 39.0
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 2.2e-200 703.7 1117 38.1
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 1.8e-199 700.7 1122 38.7
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 2.4e-199 700.3 1118 38.5
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.2e-198 698.0 1000 41.7
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 1.6e-198 697.6 1120 37.9
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.0e-198 697.2 1130 38.8
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 1.3e-197 694.5 1120 39.5
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 2.9e-197 693.3 1120 39.4
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 3.8e-197 693.0 1117 38.3
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 1.1e-196 691.4 1129 38.1
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 1.9e-196 690.6 1120 39.6
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 5.5e-196 689.1 1140 38.2
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 9.4e-196 688.3 1118 39.7
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 1.6e-195 687.6 1113 38.6
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 2.1e-195 687.2 1128 37.8
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 4.7e-195 686.0 1112 39.3
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 1.0e-194 684.9 1120 39.1
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-194 684.5 1118 39.2
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.2e-193 681.4 1122 39.0
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 6.3e-192 675.6 1106 38.2
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 3.5e-190 669.8 1128 37.5
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 1.9e-188 664.1 1111 37.2
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.9e-188 664.1 647 53.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 2.5e-188 663.7 1134 37.1
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.3e-188 663.3 696 51.1
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 3.0e-186 656.8 490 68.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 4.0e-186 656.4 1132 36.8
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 9.8e-185 651.7 1122 37.7
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 1.1e-183 648.3 1088 38.6
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 2.7e-182 643.7 1126 36.0
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 7.8e-182 642.1 857 43.6
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 4.0e-178 629.8 1106 37.3
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 2.9e-176 623.6 1118 35.2
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 1.0e-173 615.1 766 45.6
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 1.6e-171 607.8 1015 36.9
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 3.1e-170 603.6 1081 37.3
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 7.5e-169 599.0 655 49.3
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.9e-167 594.3 991 38.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-164 585.1 722 46.3
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 2.5e-164 583.9 1134 34.9
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 6.8e-162 575.9 825 41.6
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.7e-160 571.2 1112 34.4
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.8e-155 553.9 742 44.2
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 6.6e-149 532.7 736 43.6
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 1.2e-147 528.5 1346 30.5
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.3e-138 496.5 355 72.1
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 2.9e-136 490.7 725 40.4
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.1e-134 484.6 911 36.0
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 1.8e-125 454.9 1210 30.1
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 2.5e-124 451.1 739 36.5
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.2e-120 438.0 303 71.9
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 3.7e-115 420.6 770 35.6
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 2.4e-114 417.9 728 37.5
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 2.5e-111 407.9 575 41.0
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 5.1e-109 400.2 1149 29.2
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.3e-108 397.5 831 32.1
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 3.4e-105 387.5 1006 30.8
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 2.7e-102 377.9 1126 28.2
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.4e-98 365.5 382 52.9
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 4.1e-98 364.0 405 49.6
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 5.3e-90 337.0 783 31.8
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 8.0e-86 323.2 366 45.9
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.3e-83 315.8 249 67.1
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 3.7e-75 287.7 365 44.1
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 5.9e-73 280.4 669 31.8
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 8.0e-70 270.0 160 80.6
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.7e-64 252.3 195 64.1
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 4.3e-63 247.7 365 40.0
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 6.1e-62 243.8 206 60.2
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 1.0e-61 243.0 295 47.8
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 2.4e-58 231.9 206 59.2
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.4e-52 211.1 251 47.8
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 9.8e-52 209.9 268 45.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 7.8e-49 200.3 161 59.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 3.9e-40 171.4 401 31.7
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 4.9e-35 154.5 426 29.6
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 2.3e-32 145.6 109 63.3
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 6.0e-25 120.9 93 63.4
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 6.6e-24 117.5 97 55.7
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 3.3e-23 115.2 212 34.0
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 9.0e-21 107.1 93 60.2
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 6.4e-19 100.9 142 45.8
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 1.4e-18 99.8 122 44.3
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 3.4e-12 78.6 167 33.5
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 1.1e-07 63.5 42 76.2


User provided reference genes

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