Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 0.0e+00 2159.4 1124 100.0
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 0.0e+00 1395.2 908 84.5
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 0.0e+00 1190.6 912 72.5
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1149.0 927 69.3
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 0.0e+00 1104.0 955 65.9
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.3e-311 1072.4 926 65.6
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 2.1e-304 1049.3 849 68.7
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.9e-289 999.6 796 70.1
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 5.5e-284 981.5 910 62.2
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 7.4e-281 971.1 810 67.9
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 1.3e-277 960.3 924 60.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 2.7e-275 952.6 848 64.7
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 4.7e-275 951.8 924 59.7
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 6.3e-272 941.4 907 60.7
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 3.6e-267 925.6 908 60.4
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 4.7e-267 925.2 942 59.0
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.1e-265 920.6 919 58.8
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.8e-264 915.2 918 59.4
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 2.3e-258 896.3 927 57.6
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 9.7e-257 891.0 934 57.3
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 8.2e-256 887.9 919 57.1
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.8e-255 886.7 910 58.0
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 1.6e-254 883.6 912 58.0
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.2e-251 874.0 911 57.1
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.2e-250 868.6 930 55.7
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.2e-248 863.2 921 56.0
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 1.4e-247 860.5 943 56.4
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 7.0e-247 858.2 918 55.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.2e-246 857.4 918 55.8
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 2.0e-246 856.7 929 57.4
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 2.0e-246 856.7 934 56.5
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 8.6e-245 851.3 932 57.3
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 7.2e-244 848.2 918 55.0
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-243 847.4 910 56.7
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 4.7e-243 845.5 917 56.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 6.1e-243 845.1 893 57.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 1.5e-241 840.5 919 55.2
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.4e-239 833.9 909 55.3
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.7e-238 829.7 968 54.1
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 3.5e-238 829.3 914 54.8
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.9e-237 826.2 930 55.8
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 5.0e-237 825.5 912 55.5
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 1.2e-235 820.8 909 54.5
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 4.7e-235 818.9 884 55.9
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 5.8e-233 812.0 893 55.1
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.9e-232 808.9 902 54.8
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 6.4e-232 808.5 902 55.1
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.1e-231 807.7 925 53.9
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 2.0e-230 803.5 912 54.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 2.3e-229 800.0 965 52.6
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 8.6e-229 798.1 892 53.4
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 1.1e-228 797.7 905 53.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.5e-228 796.6 933 52.1
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 9.5e-228 794.7 891 53.8
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 1.6e-227 793.9 915 53.9
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 5.2e-226 788.9 891 53.4
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 2.0e-225 786.9 914 53.9
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.6e-225 786.6 901 53.8
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.3e-224 784.3 912 53.8
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 8.3e-224 781.6 912 54.4
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.2e-222 777.7 835 55.4
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.9e-221 772.7 936 51.8
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 8.6e-221 771.5 927 54.0
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 8.6e-221 771.5 914 52.5
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.2e-219 767.7 934 53.2
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 2.3e-218 763.5 932 54.1
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 5.2e-218 762.3 812 55.9
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 6.8e-218 761.9 936 52.2
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 1.3e-216 757.7 890 53.4
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.9e-215 753.8 913 51.6
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 4.1e-215 752.7 915 52.6
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.6e-214 750.7 931 52.4
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.6e-213 745.0 935 52.3
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 1.1e-212 744.6 920 52.3
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 8.1e-211 738.4 884 52.4
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 8.1e-211 738.4 915 52.7
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 3.8e-208 729.6 874 50.9
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.1e-207 728.0 918 50.9
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 7.1e-207 725.3 856 52.9
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 8.7e-205 718.4 923 51.1
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.5e-204 716.8 893 50.8
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 5.6e-204 715.7 834 53.1
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 3.6e-203 713.0 892 51.8
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 4.7e-203 712.6 932 50.5
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 8.1e-203 711.8 899 52.1
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 8.1e-203 711.8 929 50.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.9e-200 703.4 924 49.7
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.1e-199 701.4 932 49.7
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.1e-194 683.3 766 53.0
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 5.8e-193 679.1 921 48.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 8.4e-192 675.2 912 50.3
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 1.9e-191 674.1 847 49.9
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.2e-190 671.4 914 48.9
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.0e-189 668.3 927 48.4
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.3e-189 667.2 840 51.9
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 5.1e-189 666.0 934 48.3
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 6.7e-189 665.6 913 50.2
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.8e-186 657.5 925 47.9
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.2e-185 654.8 707 56.2
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 3.4e-185 653.3 667 56.2
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.2e-184 650.6 921 47.3
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.9e-183 647.5 873 47.8
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 7.4e-180 635.6 846 49.2
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.4e-178 631.3 730 53.7
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.9e-175 620.9 911 47.6
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 2.5e-175 620.5 904 47.5
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 2.5e-172 610.5 751 51.1
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 1.4e-170 604.7 937 45.4
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 1.9e-167 594.3 807 48.7
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 3.6e-166 590.1 807 48.3
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.4e-165 588.2 782 48.5
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 7.4e-164 582.4 905 44.5
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.3e-149 534.3 881 42.6
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.8e-146 524.6 914 43.2
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 2.2e-144 517.7 912 42.7
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 4.2e-143 513.5 898 43.1
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.6e-142 511.5 896 42.3
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.4e-141 508.4 796 45.9
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.3e-141 507.7 798 45.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 2.4e-138 497.7 893 40.2
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 4.7e-134 483.4 789 44.5
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 8.3e-131 472.6 809 43.4
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.0e-129 468.0 794 43.6
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.0e-125 455.7 817 41.7
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 3.7e-123 447.2 787 42.3
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.7e-113 414.5 789 39.0
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 4.7e-110 403.7 786 39.8
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 8.0e-110 402.9 781 39.4
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 3.1e-109 401.0 788 39.8
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 5.2e-109 400.2 511 49.9
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 2.1e-105 388.3 781 38.8
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 3.9e-104 384.0 770 39.4
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.5e-103 382.1 782 38.9
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 3.4e-100 370.9 459 50.5
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 9.9e-100 369.4 358 60.9
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 9.9e-100 369.4 358 60.9
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 1.7e-96 358.6 790 38.0
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.8e-85 322.0 409 49.9
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 3.3e-79 301.2 1025 29.7
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 2.7e-73 281.6 812 32.6
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 9.6e-71 273.1 309 55.7
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.8e-70 271.6 700 34.0
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.4e-69 269.2 937 30.6
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 5.5e-66 257.3 805 31.6
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 7.9e-65 253.4 425 40.9
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.3e-59 236.1 906 27.9
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 6.5e-59 233.8 777 30.8
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 6.7e-48 197.2 385 37.1
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 6.9e-45 187.2 166 61.4
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 4.5e-36 157.9 144 63.2
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-35 156.4 170 55.9
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 2.9e-35 155.2 179 55.3
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 8.5e-35 153.7 128 64.1
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 1.1e-34 153.3 210 45.7
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.5e-34 152.9 179 54.7
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 2.9e-27 128.6 98 75.5
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.4e-26 123.6 114 56.1
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.4e-24 119.8 128 54.7
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 1.8e-24 119.4 128 53.1
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 9.8e-23 113.6 188 41.5
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 3.7e-22 111.7 77 76.6
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 2.2e-19 102.4 131 55.7
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 1.1e-18 100.1 163 41.1
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 7.2e-18 97.4 201 37.3
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 9.4e-18 97.1 204 35.3
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 3.1e-13 82.0 98 58.2
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 5.4e-13 81.3 88 55.7
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 5.4e-13 81.3 344 27.6
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 2.0e-12 79.3 86 50.0
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 4.5e-12 78.2 410 25.9
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 2.3e-11 75.9 154 40.9
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 1.9e-10 72.8 46 78.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.1e-09 69.3 46 76.1
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 2.8e-09 68.9 74 54.1
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.4e-08 66.6 204 32.4
CAN.G300.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.4e-08 66.6 83 48.2
CAN.G578.12 Capsicum annuum HOM05D001816 ORTHO05D004439 1.5e-07 63.2 59 57.6
HanXRQChr11g0343691 Helianthus annuus HOM05D000954 ORTHO05D016146 2.0e-07 62.8 35 88.6
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 2.6e-07 62.4 77 44.2
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.4e-07 62.0 78 43.6
CAN.G1307.1 Capsicum annuum HOM05D001472 ORTHO05D004439 1.7e-06 59.7 51 56.9
HanXRQChr09g0246151 Helianthus annuus HOM05D003640 ORTHO05D016146 4.9e-06 58.2 34 85.3


User provided reference genes

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