Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1786.2 871 100.0
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1652.9 870 92.1
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1486.5 871 81.9
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1484.9 871 81.9
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1389.4 871 76.6
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1373.6 872 77.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1372.1 878 76.3
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1358.2 867 75.3
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1350.5 868 75.3
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1345.1 871 73.8
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1343.9 867 74.6
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1339.7 866 73.6
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1335.1 866 73.6
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1335.1 867 73.8
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1333.2 866 74.1
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1332.4 865 73.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1328.5 869 72.3
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1327.8 868 73.3
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1327.0 869 73.0
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1325.1 868 72.6
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1318.1 867 73.0
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1313.1 872 72.0
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1307.4 866 71.4
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1305.8 867 72.1
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1305.4 866 71.8
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1300.0 866 71.6
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1299.3 867 71.3
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1298.5 878 71.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1297.7 866 71.0
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1297.7 865 71.2
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 871 71.6
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1295.4 866 71.4
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1287.3 866 71.6
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1286.9 866 71.2
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1286.6 873 71.4
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1286.2 859 71.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1285.4 866 71.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1284.6 866 70.8
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 873 71.0
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1281.5 867 71.0
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 870 70.3
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1280.8 870 71.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1280.0 866 70.8
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 866 71.0
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1276.5 879 69.4
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1275.0 860 71.0
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1275.0 866 70.6
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 868 71.1
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1274.2 866 70.2
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1273.5 868 70.4
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 870 69.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1272.7 865 69.9
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1269.6 881 70.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1265.8 867 70.7
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1265.0 870 69.4
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1264.2 871 69.7
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1263.4 867 69.7
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1261.5 875 69.4
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 866 69.1
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1258.8 866 69.5
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1256.9 866 70.2
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1256.1 871 69.7
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1255.4 866 70.3
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1254.2 871 70.1
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1252.3 868 69.7
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 869 69.2
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 871 69.5
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1251.5 873 69.0
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1249.2 866 68.9
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 877 68.4
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1245.0 885 67.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1243.0 866 68.7
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1242.6 893 68.0
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1239.9 869 68.8
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1239.2 869 68.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1238.4 869 69.3
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1238.0 867 68.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1237.2 866 68.6
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1235.7 865 68.9
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1231.1 827 70.9
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 863 68.5
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 869 67.8
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1229.5 867 67.6
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1228.4 869 67.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1228.0 869 67.7
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 872 67.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1224.5 872 67.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 865 67.3
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1164.1 867 65.4
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1132.1 851 65.5
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 0.0e+00 1120.1 743 73.4
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 0.0e+00 1089.3 867 60.6
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 0.0e+00 1077.8 863 61.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.0e-311 1071.6 647 77.4
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.9e-308 1062.4 691 72.4
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 6.1e-307 1057.4 867 62.3
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 9.4e-300 1033.5 692 70.5
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 3.7e-288 995.0 864 54.9
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 1.7e-285 986.1 869 55.1
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 7.5e-281 970.7 870 54.3
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.1e-279 966.8 872 54.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.6e-206 723.8 781 47.6
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.1e-182 643.7 388 79.9
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 1.0e-165 588.2 478 63.0
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 5.4e-146 522.7 461 57.3
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 4.3e-119 433.3 368 59.5
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 4.3e-103 380.2 307 62.9
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 8.0e-73 279.6 204 65.7
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 9.1e-69 266.2 168 74.4
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 2.6e-55 221.5 161 67.7
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 5.9e-52 210.3 175 56.6
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 5.4e-45 187.2 195 51.3
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 6.8e-40 170.2 216 44.9
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 9.2e-37 159.8 121 66.9
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 2.5e-34 151.8 149 49.0
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-33 149.4 85 83.5
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 2.1e-25 122.1 87 70.1
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.8e-24 119.0 90 64.4
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-23 114.8 69 78.3
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-20 106.3 81 59.3
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 4.0e-16 91.3 105 45.7
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.3e-14 86.3 273 25.6
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 5.4e-13 80.9 95 45.3
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.0e-12 77.4 325 23.7
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 6.6e-11 73.9 342 23.1
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 6.6e-11 73.9 308 24.4
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.5e-10 72.8 307 24.1
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 9.6e-10 70.1 317 24.9
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 6.2e-09 67.4 84 44.0
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 8.1e-09 67.0 32 87.5
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 8.1e-09 67.0 239 23.8
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 8.1e-09 67.0 308 23.1
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.4e-08 65.5 319 22.9
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 4.0e-08 64.7 64 48.4
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-07 63.2 286 26.6
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 2.6e-07 62.0 304 26.6
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 5.8e-07 60.8 174 27.0
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 9.9e-07 60.1 217 25.3
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.3e-06 59.7 308 22.7
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.9e-06 58.5 222 22.5
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.8e-06 58.2 231 26.0


User provided reference genes

Program Settings