Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 8.8e-145 516.9 260 100.0
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 3.8e-87 325.5 274 66.1
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.5e-67 260.4 267 56.6
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.9e-63 246.1 269 53.9
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.4e-62 243.8 267 52.4
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 9.4e-62 241.1 266 52.6
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.6e-61 239.2 267 51.7
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 2.6e-59 233.0 273 51.6
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.8e-57 226.9 269 52.0
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 3.4e-56 222.6 269 48.3
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 1.3e-55 220.7 266 49.6
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 1.4e-54 217.2 267 46.8
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 3.2e-54 216.1 267 47.9
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.2e-53 214.2 272 47.1
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 3.6e-53 212.6 266 45.1
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 3.6e-53 212.6 233 51.5
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 4.7e-53 212.2 268 46.6
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 4.7e-53 212.2 268 45.9
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 2.0e-51 206.8 268 43.3
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 3.3e-51 206.1 268 45.1
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 7.4e-51 204.9 268 45.1
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.3e-50 204.1 277 45.1
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 1.7e-50 203.8 269 45.4
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 2.8e-50 203.0 275 45.1
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 1.1e-49 201.1 277 45.1
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 1.4e-49 200.7 277 44.4
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 1.8e-49 200.3 275 44.4
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 3.1e-49 199.5 280 45.0
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 7.0e-49 198.4 224 49.1
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 7.0e-49 198.4 245 49.0
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 1.6e-48 197.2 268 43.3
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 7.7e-48 194.9 238 47.1
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 1.0e-47 194.5 281 42.7
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 1.3e-47 194.1 271 42.8
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 2.2e-47 193.4 268 42.9
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 2.2e-47 193.4 224 48.7
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 2.9e-47 193.0 268 42.5
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 8.5e-47 191.4 273 42.1
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 1.5e-46 190.7 243 45.3
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 1.5e-46 190.7 257 45.1
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 3.2e-46 189.5 269 42.4
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 5.5e-46 188.7 269 42.0
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 5.5e-46 188.7 248 44.0
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 7.2e-46 188.3 268 41.4
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 7.2e-46 188.3 240 45.4
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 9.4e-46 188.0 235 46.4
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 1.2e-45 187.6 279 41.9
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 2.1e-45 186.8 239 45.2
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 4.7e-45 185.7 221 48.9
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 8.0e-45 184.9 266 43.2
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 8.0e-45 184.9 271 42.1
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 1.0e-44 184.5 218 46.8
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 1.8e-44 183.7 277 41.2
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 3.0e-44 183.0 254 43.3
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 3.0e-44 183.0 255 45.5
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 6.7e-44 181.8 215 47.4
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 1.2e-43 181.0 269 44.6
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 1.2e-43 181.0 214 46.7
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 2.0e-43 180.3 236 43.6
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.6e-43 179.9 270 43.3
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 2.6e-43 179.9 243 44.9
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 3.3e-43 179.5 272 42.6
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 5.7e-43 178.7 257 42.4
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 5.7e-43 178.7 241 43.2
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 5.7e-43 178.7 273 42.5
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 1.7e-42 177.2 267 43.8
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 2.2e-42 176.8 184 54.3
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 3.7e-42 176.0 269 41.3
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 6.3e-42 175.3 205 46.8
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.1e-41 174.5 218 48.6
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 1.4e-41 174.1 208 48.6
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 3.1e-41 172.9 236 41.9
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 4.5e-40 169.1 244 42.6
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 7.7e-40 168.3 239 42.7
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 1.7e-39 167.2 276 38.4
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 8.5e-39 164.9 245 40.8
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 1.1e-38 164.5 213 44.6
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 3.2e-38 162.9 167 52.1
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 9.4e-38 161.4 240 41.2
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.6e-37 160.6 240 41.2
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.6e-37 160.6 248 42.3
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 4.7e-37 159.1 213 43.7
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 6.1e-37 158.7 240 40.8
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.4e-36 157.5 240 40.8
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 1.8e-36 157.1 240 40.8
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.8e-36 157.1 229 41.9
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 2.3e-36 156.8 254 41.7
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 3.0e-36 156.4 269 37.5
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.2e-35 154.5 271 41.0
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.5e-35 154.1 215 42.3
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 2.0e-35 153.7 207 43.5
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 3.7e-34 149.4 219 40.2
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 3.7e-34 149.4 224 41.5
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 8.3e-34 148.3 169 45.0
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 2.4e-33 146.7 226 44.2
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 4.1e-33 146.0 267 38.6
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 4.1e-33 146.0 219 43.4
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 5.4e-33 145.6 267 38.6
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 5.4e-33 145.6 223 43.0
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 1.2e-32 144.4 267 36.3
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.0e-32 143.7 267 38.2
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 2.0e-32 143.7 245 39.2
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 7.7e-32 141.7 235 38.3
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.3e-31 141.0 148 52.7
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 2.9e-31 139.8 231 38.1
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 5.0e-31 139.0 264 38.3
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 8.6e-31 138.3 227 42.3
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.5e-30 136.7 246 38.2
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 5.5e-30 135.6 248 38.3
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 5.5e-30 135.6 216 39.8
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.2e-29 134.4 246 39.8
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 1.6e-29 134.0 248 36.7
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-29 134.0 186 45.2
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 2.8e-29 133.3 244 36.5
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.8e-29 133.3 255 37.3
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 3.6e-29 132.9 188 43.6
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 4.7e-29 132.5 217 38.7
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 4.7e-29 132.5 244 39.8
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 1.4e-28 131.0 249 38.6
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 4.0e-28 129.4 244 36.1
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 4.0e-28 129.4 206 41.7
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 6.8e-28 128.6 242 36.8
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 6.8e-28 128.6 187 44.4
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 6.8e-28 128.6 255 37.3
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.5e-27 127.5 246 35.0
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 7.5e-27 125.2 237 36.7
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 6.3e-26 122.1 169 40.8
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 4.1e-25 119.4 244 35.2
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 5.4e-25 119.0 241 35.7
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 7.0e-25 118.6 243 35.0
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 9.2e-25 118.2 244 35.2
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-24 117.5 172 42.4
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 1.6e-24 117.5 172 42.4
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 2.0e-24 117.1 232 37.1
Oeu020552.2 Olea europaea HOM05D004023 ORTHO05D004681 3.5e-24 116.3 114 55.3
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 3.8e-23 112.8 264 33.7
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 3.8e-23 112.8 227 35.7
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 1.1e-22 111.3 202 39.1
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.5e-22 110.9 196 38.8
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 2.5e-22 110.2 195 38.5
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 2.1e-21 107.1 192 38.0
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 1.0e-20 104.8 200 36.5
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 1.8e-20 104.0 172 38.4
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 1.2e-19 101.3 252 33.3
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 9.8e-19 98.2 324 29.9
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 6.4e-18 95.5 244 33.2
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 1.4e-17 94.4 269 29.7
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 4.1e-17 92.8 211 32.2
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 7.0e-17 92.0 115 45.2
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 1.2e-16 91.3 174 35.1
arahy.Tifrunner.gnm1.ann1.NU1P8G Arachis hypogaea HOM05D004023 ORTHO05D004681 2.0e-16 90.5 212 31.6
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 6.0e-16 89.0 169 34.3
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.7e-15 87.4 253 30.0
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 3.9e-15 86.3 180 32.2
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 1.1e-14 84.7 296 27.4
PSO339G0741 Papaver somniferum HOM05D004023 ORTHO05D004681 3.3e-14 83.2 189 31.2
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 1.6e-13 80.9 241 31.5
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 6.2e-13 79.0 161 37.3
PSO478G2869 Papaver somniferum HOM05D004023 ORTHO05D004681 8.0e-13 78.6 134 36.6
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 5.2e-12 75.9 177 33.9
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 8.9e-12 75.1 181 34.3
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.1e-09 68.2 197 31.5
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 3.5e-08 63.2 144 34.7
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 3.0e-07 60.1 99 34.3
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 1.1e-06 58.2 229 26.6
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.9e-06 57.4 89 38.2
PRCOL_00005114 Prasinoderma coloniale HOM05D004023 ORTHO05D004681 4.3e-06 56.2 104 38.5


User provided reference genes

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