Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 7.0e-141 504.2 306 100.0
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 2.4e-117 426.0 306 75.5
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.6e-116 423.3 309 87.1
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.0e-115 420.6 306 73.5
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 1.6e-113 413.3 306 74.5
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.1e-107 391.7 306 69.3
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 2.3e-104 382.9 306 71.9
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.7e-102 376.7 300 71.7
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 4.6e-100 368.6 292 67.1
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 4.6e-100 368.6 304 69.4
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 3.0e-99 365.9 307 70.4
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 5.6e-98 361.7 293 65.9
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 3.6e-97 359.0 294 65.6
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 6.2e-97 358.2 299 73.2
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 4.0e-96 355.5 301 66.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 5.2e-96 355.1 305 67.9
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 8.9e-96 354.4 298 64.8
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 4.4e-95 352.1 306 62.1
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 5.8e-95 351.7 297 67.3
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 7.6e-95 351.3 293 71.3
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 9.9e-95 350.9 298 63.4
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 2.2e-94 349.7 307 63.5
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 3.8e-94 349.0 307 62.9
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 4.9e-94 348.6 306 60.8
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 6.4e-94 348.2 298 63.1
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.4e-94 348.2 298 63.8
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 3.2e-93 345.9 307 61.2
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 7.1e-93 344.7 300 67.7
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 9.2e-93 344.4 291 71.5
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 1.6e-92 343.6 308 65.9
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 2.1e-92 343.2 292 65.1
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 6.0e-92 341.7 306 60.5
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.3e-91 340.5 287 68.6
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.7e-91 340.1 308 61.4
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 1.7e-91 340.1 308 61.4
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.1e-91 338.6 298 66.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 5.1e-91 338.6 298 66.1
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 6.6e-91 338.2 296 62.5
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 6.6e-91 338.2 297 63.3
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.5e-90 337.0 308 60.7
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.9e-90 336.7 298 65.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 2.5e-90 336.3 295 62.0
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 4.3e-90 335.5 297 59.6
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.6e-90 335.1 306 59.5
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.6e-90 335.1 306 59.2
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.6e-90 335.1 306 59.2
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 5.6e-90 335.1 307 61.6
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 7.3e-90 334.7 306 57.2
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 7.3e-90 334.7 293 63.5
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 9.6e-90 334.3 290 66.6
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.6e-89 333.6 306 59.2
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 2.1e-89 333.2 298 60.4
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 2.8e-89 332.8 306 56.5
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 2.8e-89 332.8 305 71.8
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 3.6e-89 332.4 297 62.6
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 6.2e-89 331.6 306 59.2
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-88 330.9 308 68.2
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.1e-88 330.9 307 60.9
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.3e-88 328.6 306 58.2
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.2e-87 327.4 309 59.5
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 3.4e-87 325.9 306 63.7
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 4.4e-87 325.5 306 63.7
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 4.4e-87 325.5 292 61.3
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 9.9e-87 324.3 308 60.7
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 9.9e-87 324.3 298 56.7
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 2.2e-86 323.2 312 63.8
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 1.1e-85 320.9 308 56.2
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 1.9e-85 320.1 308 56.2
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 3.2e-85 319.3 294 62.6
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 9.3e-85 317.8 308 61.4
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 1.2e-84 317.4 301 58.8
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.7e-84 316.2 293 61.1
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 1.7e-83 313.5 310 61.9
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 1.7e-83 313.5 304 54.6
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 3.9e-83 312.4 307 57.0
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 5.1e-83 312.0 297 52.2
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 2.5e-82 309.7 301 56.8
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.5e-82 309.7 265 73.6
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 1.3e-81 307.4 314 61.1
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 2.8e-81 306.2 307 52.1
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.6e-81 305.8 307 51.1
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 3.6e-81 305.8 276 59.1
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 6.2e-81 305.1 318 60.7
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 1.1e-80 304.3 306 56.9
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 1.4e-80 303.9 305 58.0
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.8e-80 303.5 196 76.0
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 4.0e-80 302.4 302 62.6
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.2e-79 300.8 309 62.5
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 2.0e-79 300.1 301 50.8
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 2.0e-79 300.1 305 56.7
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.6e-79 299.7 256 62.1
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 3.4e-79 299.3 306 56.5
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 4.5e-79 298.9 312 53.2
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 5.8e-79 298.5 305 65.9
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-77 294.3 295 58.3
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 5.4e-77 292.0 313 53.4
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 5.4e-77 292.0 313 53.4
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 5.4e-77 292.0 355 54.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 1.2e-76 290.8 294 57.8
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 1.2e-76 290.8 314 51.9
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 3.5e-76 289.3 300 55.7
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.5e-76 289.3 310 50.6
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 6.0e-76 288.5 314 51.9
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 6.0e-76 288.5 314 51.6
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 1.3e-75 287.3 314 51.9
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 1.8e-75 287.0 311 53.7
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 2.3e-75 286.6 320 51.2
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.3e-75 286.6 303 52.5
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 3.9e-75 285.8 314 53.8
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 5.1e-75 285.4 308 52.9
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 6.7e-75 285.0 188 73.9
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 4.8e-73 278.9 280 56.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 2.6e-71 273.1 194 69.1
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 2.2e-70 270.0 293 50.9
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.2e-69 266.2 262 56.9
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 2.1e-68 263.5 317 46.7
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 6.9e-64 248.4 229 66.4
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 7.6e-63 245.0 311 54.0
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 2.2e-62 243.4 298 47.3
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 1.6e-60 237.3 289 48.1
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-59 234.2 176 66.5
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 2.5e-58 229.9 220 55.5
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 2.2e-57 226.9 186 60.2
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.1e-53 214.5 188 54.8
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.1e-50 204.5 186 53.2
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 2.6e-39 166.8 161 48.4
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 2.6e-39 166.8 170 44.7
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 6.5e-38 162.2 99 80.8
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 8.0e-36 155.2 131 60.3
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 3.9e-35 152.9 288 43.1
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 1.1e-29 134.8 202 41.1
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 7.0e-24 115.5 197 31.5
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.7e-23 113.6 66 77.3
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 6.5e-22 109.0 167 36.5
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 8.5e-22 108.6 166 34.3
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.1e-21 108.2 68 72.1
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-20 104.8 134 54.5
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.2e-20 104.8 134 54.5
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.0e-19 99.8 77 63.6
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 7.5e-18 95.5 64 70.3
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 3.7e-17 93.2 62 71.0
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 3.3e-13 80.1 119 44.5
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 8.0e-12 75.5 50 70.0
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 1.4e-11 74.7 134 47.8
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 1.8e-11 74.3 43 79.1
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.0e-11 73.6 45 71.1
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 6.8e-11 72.4 45 71.1
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 2.3e-06 57.4 39 66.7


User provided reference genes

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