Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 7.6e-177 623.6 296 100.0
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 1.2e-121 440.3 295 73.9
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 3.3e-111 405.6 304 64.8
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 4.1e-98 362.1 304 58.2
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.4e-90 337.0 304 56.9
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 7.3e-87 324.7 304 52.6
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 4.9e-83 312.0 305 52.5
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 3.2e-82 309.3 297 51.2
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 3.2e-82 309.3 298 51.3
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 4.2e-82 308.9 298 51.7
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 2.7e-81 306.2 298 52.0
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 4.6e-81 305.4 300 52.3
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.6e-81 305.4 294 51.7
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.8e-80 303.5 295 51.5
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 2.3e-80 303.1 305 51.1
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 3.0e-80 302.8 304 50.3
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 4.3e-79 298.9 306 50.7
CSS0049746 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 8.1e-78 294.7 250 58.0
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.1e-78 294.7 304 49.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 8.1e-78 294.7 306 50.0
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 1.4e-77 293.9 304 49.7
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.8e-77 293.5 304 50.7
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 9.0e-77 291.2 304 50.3
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 2.6e-76 289.7 299 49.2
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 1.3e-75 287.3 298 48.7
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.3e-75 287.3 298 48.7
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 1.3e-75 287.3 305 48.5
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 1.7e-75 287.0 304 49.0
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.2e-75 286.6 305 50.2
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 6.4e-75 285.0 304 50.3
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 5.5e-74 282.0 301 49.8
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 1.6e-73 280.4 305 48.5
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 1.6e-73 280.4 305 48.5
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 3.5e-73 279.3 304 49.0
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 4.6e-73 278.9 297 50.5
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 6.0e-73 278.5 299 47.5
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 1.0e-72 277.7 303 47.9
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 1.8e-72 276.9 300 49.0
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 1.8e-72 276.9 301 49.2
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 5.1e-72 275.4 300 48.7
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.7e-72 274.6 299 49.8
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.5e-71 273.9 302 49.3
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 1.5e-71 273.9 305 48.5
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 2.5e-71 273.1 302 48.3
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 3.3e-71 272.7 304 48.4
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 4.3e-71 272.3 298 48.7
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 4.3e-71 272.3 305 47.5
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 7.4e-71 271.6 299 47.5
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 1.3e-70 270.8 305 49.5
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 1.3e-70 270.8 304 46.4
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 3.7e-70 269.2 303 46.2
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 8.1e-70 268.1 301 46.5
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.1e-69 267.7 317 45.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.4e-69 267.3 304 47.0
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 2.4e-69 266.5 305 49.2
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 2.4e-69 266.5 305 46.9
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 4.0e-69 265.8 304 47.0
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.2e-68 264.2 300 47.3
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 1.5e-68 263.8 304 46.7
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 2.0e-68 263.5 304 46.4
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 3.4e-68 262.7 296 48.6
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 3.4e-68 262.7 304 48.0
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 7.6e-68 261.5 301 46.5
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.0e-67 261.2 299 47.2
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.0e-67 261.2 299 47.2
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 1.7e-67 260.4 301 46.8
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 1.7e-67 260.4 301 46.8
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 2.2e-67 260.0 291 49.1
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.9e-67 259.6 303 44.9
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.9e-67 259.6 303 44.9
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 2.9e-67 259.6 303 44.9
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 2.9e-67 259.6 300 46.0
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 3.8e-67 259.2 301 45.5
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 4.9e-67 258.8 305 46.2
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 4.9e-67 258.8 298 46.3
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-66 257.7 300 47.7
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.1e-66 257.7 299 46.8
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.1e-66 257.7 292 48.6
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 1.4e-66 257.3 297 47.8
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 1.4e-66 257.3 297 47.8
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 1.4e-66 257.3 301 46.5
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.4e-66 257.3 273 50.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 2.5e-66 256.5 300 46.3
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 3.2e-66 256.1 297 47.5
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.2e-66 255.8 307 47.9
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 7.1e-66 255.0 295 47.5
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.6e-65 253.8 295 47.1
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 2.1e-65 253.4 314 43.9
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 3.5e-65 252.7 296 46.6
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 5.1e-64 248.8 297 43.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 1.3e-62 244.2 299 45.2
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 8.2e-62 241.5 298 46.0
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 8.2e-62 241.5 299 44.5
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 2.4e-61 240.0 217 55.3
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 2.4e-61 240.0 299 44.8
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 5.3e-61 238.8 273 49.8
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 7.2e-58 228.4 200 54.5
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 1.0e-56 224.6 266 46.6
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 1.8e-56 223.8 309 41.7
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 2.3e-56 223.4 292 42.1
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 2.3e-56 223.4 300 41.7
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.1e-56 222.2 309 41.4
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 6.3e-54 215.3 296 42.6
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 7.7e-52 208.4 299 38.1
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.8e-51 206.1 195 53.3
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.9e-50 203.8 304 37.2
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 4.2e-50 202.6 297 38.4
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 2.6e-47 193.4 370 33.0
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.7e-46 190.7 330 34.8
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.8e-46 189.1 295 39.3
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 8.2e-46 188.3 175 53.1
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-45 188.0 188 51.1
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 1.1e-45 188.0 188 51.1
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 2.4e-45 186.8 183 47.0
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 3.8e-43 179.5 188 50.5
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.0e-43 179.1 188 50.5
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 4.2e-42 176.0 201 46.8
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 2.8e-38 163.3 255 37.6
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 4.1e-37 159.5 296 33.8
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 1.0e-35 154.8 311 29.9
CDE05G3470 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 3.2e-34 149.8 177 47.5
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 2.7e-33 146.7 137 54.0
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 6.7e-32 142.1 352 31.8
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 2.0e-31 140.6 133 54.9
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 1.2e-28 131.3 126 54.8
EL10Ac8g18422 Beta vulgaris HOM05D004971 ORTHO05D006289 1.7e-27 127.5 188 39.9
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 4.7e-25 119.4 212 33.0
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.4e-24 117.9 454 23.8
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 9.8e-23 111.7 140 45.0
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.4e-21 107.1 133 45.1
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 1.0e-19 101.7 130 41.5
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 1.3e-19 101.3 65 73.8
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 3.8e-19 99.8 414 22.5
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 2.5e-18 97.1 131 39.7
Nitab4.5_0002165g0090 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.5e-18 97.1 56 67.9
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 3.2e-18 96.7 335 23.9
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 8.0e-17 92.0 103 47.6
Lj4g0009518 Lotus japonicus HOM05D004971 ORTHO05D006289 1.8e-16 90.9 51 74.5
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 2.2e-14 84.0 38 97.4
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 2.9e-11 73.6 38 78.9
MBI19_g42779_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.3e-10 68.9 175 27.4
Haze_02522 Corylus avellana HOM05D004971 ORTHO05D006289 4.0e-08 63.2 100 40.0
MBI19_g24589_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 2.0e-07 60.8 55 52.7
FvH4_7g02480 Fragaria vesca HOM05D004971 ORTHO05D022553 2.6e-07 60.5 38 68.4
FvH4_7g02600 Fragaria vesca HOM05D004971 ORTHO05D022553 2.6e-07 60.5 38 68.4


User provided reference genes

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