Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 0.0e+00 1245.3 665 100.0
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 4.3e-260 901.4 665 76.2
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.3e-232 810.1 668 68.9
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.4e-223 780.0 661 66.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 6.9e-194 681.4 653 59.3
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 6.9e-194 681.4 658 58.7
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 1.2e-193 680.6 662 58.8
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 3.4e-193 679.1 663 58.7
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.4e-191 673.7 665 60.0
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 2.5e-191 672.9 671 56.9
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 5.5e-191 671.8 663 57.8
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.6e-190 670.2 662 57.3
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.1e-189 665.2 660 57.1
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 6.7e-189 664.8 663 57.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.5e-188 663.7 657 58.3
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 7.4e-188 661.4 662 55.7
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 9.7e-188 661.0 660 57.3
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.7e-187 660.2 657 56.6
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 8.2e-187 657.9 661 56.1
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 8.2e-187 657.9 660 57.0
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.4e-186 656.4 675 57.6
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 3.1e-186 656.0 659 56.6
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 5.3e-186 655.2 659 56.6
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 7.0e-186 654.8 659 56.8
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 9.1e-186 654.4 667 56.4
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 1.2e-185 654.1 656 57.3
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.3e-184 650.6 657 55.9
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.9e-184 649.4 659 55.7
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 3.8e-184 649.0 661 55.7
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 4.2e-183 645.6 655 57.1
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 6.1e-182 641.7 657 56.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 6.7e-181 638.3 658 55.0
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.3e-180 636.0 656 54.9
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 7.4e-180 634.8 662 54.5
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.8e-179 632.9 663 55.5
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 8.2e-179 631.3 653 57.0
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 2.0e-177 626.7 680 53.4
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 2.0e-177 626.7 658 54.1
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 5.9e-177 625.2 665 55.2
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 1.7e-176 623.6 678 53.4
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.5e-176 621.7 665 53.4
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.5e-175 620.5 655 54.2
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-175 620.2 662 54.1
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 2.5e-175 619.8 664 53.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.5e-175 619.8 655 54.5
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-175 619.8 670 53.0
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 1.6e-174 617.1 655 53.7
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-174 617.1 655 54.2
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 8.0e-174 614.8 649 54.1
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 2.3e-173 613.2 652 53.5
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 1.2e-172 610.9 676 54.1
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 6.3e-171 605.1 658 53.6
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 4.1e-170 602.4 672 53.1
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.0e-170 601.7 655 52.7
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.6e-169 600.5 665 53.1
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 5.9e-169 598.6 664 52.0
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 1.7e-168 597.0 659 52.5
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 1.1e-167 594.3 655 52.1
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.1e-167 594.3 658 52.6
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.5e-167 593.2 653 51.3
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.2e-167 592.8 673 50.7
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 3.2e-167 592.8 657 53.4
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 7.2e-167 591.7 648 52.2
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 2.1e-166 590.1 662 52.1
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 4.0e-165 585.9 651 52.8
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 4.0e-165 585.9 657 52.5
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 5.2e-165 585.5 673 51.6
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 6.8e-165 585.1 672 52.1
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.0e-164 583.6 662 51.2
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 9.8e-164 581.3 666 52.7
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.7e-163 579.3 665 50.7
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 4.1e-162 575.9 654 50.9
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 1.2e-161 574.3 662 51.8
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 4.5e-161 572.4 660 50.3
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.9e-161 572.0 663 50.8
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.7e-160 570.5 655 50.7
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 4.7e-158 562.4 666 50.3
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-157 560.5 666 50.3
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 5.7e-156 555.4 662 50.0
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.7e-155 553.9 680 49.0
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 2.2e-155 553.5 682 49.0
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.1e-151 541.2 662 48.0
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.1e-151 541.2 661 50.2
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 5.2e-149 532.3 516 60.5
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 3.4e-148 529.6 667 47.2
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 1.5e-143 514.2 665 45.0
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.5e-143 514.2 666 46.5
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 9.5e-143 511.5 681 44.5
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 2.1e-142 510.4 661 47.8
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.7e-142 509.2 667 44.8
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 7.5e-140 501.9 662 44.7
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.1e-138 496.1 684 43.1
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 5.4e-138 495.7 661 44.8
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 7.8e-137 491.9 675 45.5
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 2.3e-136 490.3 679 44.0
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 1.5e-135 487.6 668 44.0
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.5e-135 487.6 647 45.4
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 1.9e-135 487.3 668 44.0
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 4.3e-135 486.1 683 43.5
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.4e-133 481.1 658 43.9
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.4e-132 476.1 665 43.2
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-128 464.5 544 49.3
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 8.6e-128 461.8 471 58.4
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.1e-126 457.2 666 44.0
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.8e-125 454.1 658 44.8
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 7.6e-124 448.7 522 52.3
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.2e-121 441.4 652 42.2
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-116 424.9 633 43.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 4.9e-115 419.5 526 47.7
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.5e-113 413.3 612 44.6
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 9.0e-109 398.7 663 40.4
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.1e-105 387.5 406 54.7
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.5e-100 371.3 656 36.4
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 7.6e-100 369.0 378 54.8
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 2.2e-99 367.5 657 35.6
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 6.0e-97 359.4 664 37.5
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 5.3e-93 346.3 663 34.7
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 8.5e-83 312.4 382 46.3
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.1e-79 302.0 349 53.0
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 8.5e-75 285.8 561 37.1
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 7.2e-74 282.7 405 43.5
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 5.1e-72 276.6 560 36.4
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.5e-68 265.0 173 75.1
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.7e-67 261.5 593 34.9
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.7e-64 249.6 158 77.2
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.1e-57 228.0 221 58.4
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-56 225.3 552 33.2
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-55 221.5 322 42.5
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 2.8e-46 191.0 502 29.9
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 9.5e-42 176.0 130 67.7
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 1.0e-40 172.6 142 57.0
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-40 172.2 149 63.1
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-39 168.3 118 70.3
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-38 165.2 316 37.3
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-38 164.9 118 68.6
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-33 147.1 236 39.8
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 2.3e-27 128.3 195 45.1
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-25 120.2 171 42.7
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-22 110.9 109 58.7
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.7e-22 110.9 285 32.3
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 8.3e-22 109.8 102 52.9
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 5.4e-13 80.5 79 58.2
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 2.1e-12 78.6 44 79.5
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.6e-09 68.9 59 57.6
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 1.6e-09 68.9 44 70.5
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 2.1e-09 68.6 43 74.4
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 3.6e-09 67.8 67 52.2
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-08 66.2 137 35.8
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 4.0e-08 64.3 187 33.2
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 8.9e-08 63.2 52 63.5
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-07 61.2 36 77.8
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 4.4e-07 60.8 46 67.4
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 7.6e-07 60.1 39 71.8
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 9.9e-07 59.7 43 67.4


User provided reference genes

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