Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 4.7e-177 624.4 308 100.0
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 4.7e-153 544.7 306 87.3
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 2.0e-132 476.1 305 77.4
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 8.6e-131 470.7 338 69.8
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 3.6e-129 465.3 298 77.2
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 2.3e-123 446.0 312 73.1
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 5.6e-122 441.4 302 70.9
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 1.2e-119 433.7 293 72.4
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 1.5e-119 433.3 299 70.9
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 2.6e-119 432.6 299 70.6
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 1.1e-117 427.2 290 73.4
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 2.1e-116 422.9 284 71.8
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 3.5e-116 422.2 303 69.0
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 1.0e-115 420.6 312 68.3
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 2.3e-115 419.5 263 76.8
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 8.7e-115 417.5 328 65.5
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 2.5e-114 416.0 274 73.7
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 5.6e-114 414.8 303 69.0
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 1.2e-113 413.7 277 72.6
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 4.7e-113 411.8 306 68.6
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 4.7e-113 411.8 289 71.3
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 1.4e-112 410.2 271 74.2
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 2.4e-112 409.5 258 75.6
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 2.4e-112 409.5 299 67.6
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.2e-111 407.1 284 70.4
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 2.6e-111 406.0 271 71.2
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 9.9e-111 404.1 344 62.5
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 2.2e-110 402.9 312 66.0
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 2.9e-110 402.5 283 71.4
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.9e-110 402.5 325 65.5
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 2.9e-110 402.5 274 70.8
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 5.4e-109 398.3 287 66.9
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 2.7e-108 396.0 276 68.8
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 4.6e-108 395.2 282 68.8
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 4.6e-108 395.2 301 64.8
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 7.8e-108 394.4 276 68.8
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 7.8e-108 394.4 276 68.8
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 3.0e-107 392.5 276 68.5
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 3.0e-107 392.5 276 68.5
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 3.0e-107 392.5 283 68.2
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 6.6e-107 391.3 264 70.5
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 8.7e-107 391.0 301 62.8
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 8.7e-107 391.0 271 69.4
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 8.7e-107 391.0 292 69.5
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 1.1e-106 390.6 274 69.7
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 1.5e-106 390.2 299 63.5
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 4.3e-106 388.7 273 70.3
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 4.3e-106 388.7 269 68.8
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 1.3e-105 387.1 274 69.3
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 1.3e-105 387.1 301 64.1
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 2.8e-105 386.0 261 70.9
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 1.4e-104 383.6 271 67.9
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 1.8e-104 383.3 291 64.3
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 3.1e-104 382.5 258 69.0
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 4.0e-104 382.1 267 68.5
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 6.9e-104 381.3 276 69.2
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 2.0e-103 379.8 307 64.5
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 4.5e-103 378.6 302 62.3
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 4.5e-103 378.6 256 71.9
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 9.9e-103 377.5 279 68.5
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 9.9e-103 377.5 287 65.9
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 2.2e-102 376.3 281 68.3
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 2.9e-102 375.9 256 71.5
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 4.9e-102 375.2 266 69.5
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 8.4e-102 374.4 260 68.1
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 1.1e-101 374.0 275 65.8
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 4.2e-101 372.1 303 63.0
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 9.3e-101 370.9 282 63.8
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 9.3e-101 370.9 282 63.8
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 1.2e-100 370.5 315 60.6
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 2.1e-100 369.8 280 66.4
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 3.5e-100 369.0 307 61.9
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 2.3e-99 366.3 266 65.4
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 5.1e-99 365.2 272 66.2
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 1.5e-98 363.6 277 64.6
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 1.4e-96 357.1 235 72.3
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 7.6e-95 351.3 314 57.3
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 1.3e-94 350.5 265 63.4
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 1.7e-94 350.1 262 64.1
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 4.2e-93 345.5 230 76.1
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 1.6e-92 343.6 263 63.5
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 6.2e-89 331.6 251 65.7
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 3.1e-88 329.3 295 59.3
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 1.5e-87 327.0 291 57.7
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 3.4e-87 325.9 265 58.9
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 1.0e-83 314.3 271 55.0
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 1.1e-80 304.3 309 56.0
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 7.7e-79 298.1 274 56.6
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 2.9e-78 296.2 202 69.8
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 3.6e-76 289.3 262 54.2
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 3.6e-76 289.3 227 64.3
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 4.6e-76 288.9 280 55.7
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 1.8e-75 287.0 168 78.6
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 1.1e-74 284.3 174 77.6
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 1.1e-74 284.3 213 70.4
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 4.3e-74 282.3 209 67.5
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 1.8e-72 276.9 174 74.7
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 1.5e-66 257.3 216 61.6
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 8.5e-62 241.5 216 56.9
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.5e-61 238.8 275 49.1
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.1e-58 231.1 211 56.4
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 7.2e-53 211.8 162 69.8
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 4.7e-52 209.1 142 65.5
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 9.1e-48 194.9 252 43.7
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 1.0e-43 181.4 149 61.7
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 3.1e-40 169.9 234 38.9
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 1.2e-36 157.9 141 55.3
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 5.9e-31 139.0 105 69.5
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 1.9e-29 134.0 124 59.7
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 2.3e-27 127.1 101 58.4
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 5.8e-26 122.5 91 62.6
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 4.6e-23 112.8 142 43.0
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 6.0e-23 112.5 76 68.4
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 1.8e-19 100.9 73 61.6
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.9e-16 90.9 75 60.0
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 1.6e-15 87.8 75 57.3
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.7e-14 84.3 84 53.6
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 3.0e-14 83.6 68 61.8
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 6.6e-14 82.4 101 45.5
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 7.3e-13 79.0 78 52.6
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 1.2e-12 78.2 79 51.9
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 3.6e-12 76.6 55 67.3
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 7.5e-10 68.9 55 60.0
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 9.9e-10 68.6 69 52.2
Lalb_Chr19g0137311 Lupinus albus HOM05D004609 ORTHO05D005537 1.7e-09 67.8 280 28.6
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 4.9e-09 66.2 56 55.4
Migut.D02219 Erythranthe guttata HOM05D004609 ORTHO05D005537 3.2e-08 63.5 292 27.1
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 3.2e-08 63.5 223 26.5
Lsat_1_v5_gn_5_178620 Lactuca sativa HOM05D004609 ORTHO05D005537 4.1e-08 63.2 223 28.3
Ciclev10029204m.g Citrus clementina HOM05D004609 ORTHO05D005537 9.2e-08 62.0 252 28.6
MELO3C026847.2 Cucumis melo HOM05D004609 ORTHO05D005537 9.2e-08 62.0 217 30.0
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 1.2e-07 61.6 215 28.8
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 1.6e-07 61.2 224 26.3
SEGI_11191 Sequoiadendron giganteum HOM05D004609 ORTHO05D005537 1.6e-07 61.2 219 25.1
Duzib168G0882 Durio zibethinus HOM05D004609 ORTHO05D005537 2.1e-07 60.8 213 29.1
Gohir.A13G230400 Gossypium hirsutum HOM05D004609 ORTHO05D005537 2.1e-07 60.8 215 28.8
VMungo1127G1456 Vigna mungo HOM05D004609 ORTHO05D005537 2.1e-07 60.8 303 26.7
Gorai.013G266600 Gossypium raimondii HOM05D004609 ORTHO05D005537 2.7e-07 60.5 228 28.9
HanXRQChr01g0016861 Helianthus annuus HOM05D004609 ORTHO05D005537 2.7e-07 60.5 214 29.4
Gohir.D13G235900 Gossypium hirsutum HOM05D004609 ORTHO05D005537 3.5e-07 60.1 247 27.5
Sc03g0007720 Simmondsia chinensis HOM05D004609 ORTHO05D005537 3.5e-07 60.1 218 30.3
FvH4_3g32470 Fragaria vesca HOM05D004609 ORTHO05D005537 4.6e-07 59.7 215 28.4
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 6.0e-07 59.3 215 28.4
Phvul.011G078800 Phaseolus vulgaris HOM05D004609 ORTHO05D005537 6.0e-07 59.3 232 27.2
MD03G1117100 Malus domestica HOM05D004609 ORTHO05D005537 7.8e-07 58.9 246 26.4
PGSC0003DMG400008104 Solanum tuberosum HOM05D004609 ORTHO05D005537 7.8e-07 58.9 234 26.9
Thecc.09G339900 Theobroma cacao HOM05D004609 ORTHO05D005537 7.8e-07 58.9 224 28.1
GSVIVG01025180001 Vitis vinifera HOM05D004609 ORTHO05D005537 7.8e-07 58.9 290 25.5
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 1.0e-06 58.5 82 42.7
CsaV3_1G012730 Cucumis sativus L. HOM05D004609 ORTHO05D005537 1.0e-06 58.5 217 28.6
Eucgr.B02494 Eucalyptus grandis HOM05D004609 ORTHO05D005537 1.0e-06 58.5 222 29.3
FAN11G0836 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.3e-06 58.2 215 28.4
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 1.3e-06 58.2 224 25.0
Hund10347 Selenicereus undatus HOM05D004609 ORTHO05D005537 1.3e-06 58.2 220 27.3
vmacro22829 Vaccinium macrocarpon HOM05D002538 ORTHO05D017452 1.3e-06 58.2 37 78.4
vmacro22962 Vaccinium macrocarpon HOM05D002511 ORTHO05D427033 1.3e-06 58.2 34 79.4
Dinv32753 Davidia involucrata HOM05D004609 ORTHO05D005537 1.7e-06 57.8 215 28.4
FAN21G1816 Fragaria x ananassa HOM05D004609 ORTHO05D005537 1.7e-06 57.8 217 29.5
Prupe.6G100900 Prunus persica HOM05D004609 ORTHO05D005537 1.7e-06 57.8 214 27.1
COL.COLO4_18340 Corchorus olitorius HOM05D004609 ORTHO05D005537 2.3e-06 57.4 215 28.8
PGR102G0162 Punica granatum HOM05D004609 ORTHO05D005537 2.3e-06 57.4 217 27.6
Cfa011322 Carpinus fangiana HOM05D004609 ORTHO05D005537 3.0e-06 57.0 236 28.4
DCAR_006058 Daucus carota HOM05D004609 ORTHO05D005537 3.0e-06 57.0 222 30.6
TAR633G2157 Trochodendron aralioides HOM05D004609 ORTHO05D005537 3.0e-06 57.0 214 27.1
MSTRG.17807 Avicennia marina HOM05D004609 ORTHO05D005537 3.9e-06 56.6 219 26.9
FAN16G0772 Fragaria x ananassa HOM05D004609 ORTHO05D005537 3.9e-06 56.6 217 29.5
MBI07_g19316_MAGBIO Magnolia biondii HOM05D004609 ORTHO05D005537 3.9e-06 56.6 219 27.4
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 3.9e-06 56.6 220 27.7
Sopen11g028080 Solanum pennellii HOM05D004609 ORTHO05D005537 3.9e-06 56.6 236 26.7
HPP92_018599 Vanilla planifolia HOM05D004609 ORTHO05D005537 3.9e-06 56.6 207 29.0
Rhsim01G0217400 Rhododendron simsii HOM05D004609 ORTHO05D005537 5.1e-06 56.2 245 26.1
arahy.Tifrunner.gnm1.ann1.DB762C Arachis hypogaea HOM05D004609 ORTHO05D005537 6.6e-06 55.8 220 28.2
arahy.Tifrunner.gnm1.ann1.ZK6QPF Arachis hypogaea HOM05D004609 ORTHO05D005537 6.6e-06 55.8 220 28.2
Haze_10438 Corylus avellana HOM05D004609 ORTHO05D005537 6.6e-06 55.8 229 28.4
Lj3g0003868 Lotus japonicus HOM05D004609 ORTHO05D005537 6.6e-06 55.8 224 27.7
MD11G1134900 Malus domestica HOM05D004609 ORTHO05D005537 6.6e-06 55.8 234 26.9
Solyc11g069360.2 Solanum lycopersicum HOM05D004609 ORTHO05D005537 6.6e-06 55.8 234 26.5
arahy.Tifrunner.gnm1.ann1.M55FGE Arachis hypogaea HOM05D004609 ORTHO05D005537 8.6e-06 55.5 237 26.6


User provided reference genes

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