Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 0.0e+00 1163.7 566 100.0
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 5.6e-237 824.3 554 76.7
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.8e-217 758.4 511 73.4
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.7e-212 743.0 505 72.5
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 5.5e-208 728.0 505 71.7
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 9.7e-205 717.2 457 75.1
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 7.7e-202 707.6 510 69.2
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 7.2e-200 701.0 519 68.2
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.2e-199 700.3 501 68.3
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 8.8e-198 694.1 517 68.3
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 2.2e-196 689.5 507 67.5
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.8e-196 689.1 497 68.8
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 8.2e-196 687.6 519 66.5
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 5.3e-195 684.9 528 66.7
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 2.0e-194 682.9 471 70.3
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 4.5e-194 681.8 523 65.4
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 7.7e-194 681.0 492 67.9
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 2.5e-192 676.0 508 66.3
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 4.2e-192 675.2 511 66.7
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 9.4e-192 674.1 530 65.5
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 9.4e-192 674.1 516 65.1
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 1.6e-191 673.3 526 64.1
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 8.0e-191 671.0 470 69.8
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 8.0e-191 671.0 537 65.0
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 3.0e-190 669.1 523 64.4
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 6.8e-190 667.9 510 66.5
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 8.8e-190 667.5 516 65.5
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 8.8e-190 667.5 494 68.8
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 2.0e-189 666.4 537 63.5
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 7.5e-189 664.5 526 64.3
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.2e-188 662.9 521 64.5
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 2.2e-188 662.9 497 66.2
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 2.8e-188 662.5 498 65.9
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 5.9e-186 654.8 462 68.4
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.0e-185 654.1 526 63.9
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.7e-185 653.3 513 64.1
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 6.5e-185 651.4 523 63.3
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 8.5e-185 651.0 506 64.0
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 8.5e-185 651.0 510 64.3
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 8.5e-185 651.0 501 65.5
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.5e-184 650.2 510 64.3
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 2.5e-184 649.4 514 63.6
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 3.2e-184 649.0 462 69.3
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 9.4e-184 647.5 503 65.0
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.2e-183 647.1 526 62.7
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 1.6e-183 646.7 486 66.0
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 3.6e-183 645.6 511 64.4
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 4.7e-183 645.2 511 64.2
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 1.4e-182 643.7 499 63.5
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 6.8e-182 641.3 503 63.0
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 6.8e-182 641.3 495 64.0
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.2e-181 640.6 486 64.4
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 2.0e-181 639.8 522 64.0
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 5.7e-181 638.3 505 62.4
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 8.3e-180 634.4 461 67.0
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 1.1e-179 634.0 516 62.4
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 1.4e-179 633.6 541 61.0
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.8e-179 633.3 495 62.8
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 3.1e-179 632.5 501 62.1
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 4.1e-179 632.1 497 62.4
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 4.1e-179 632.1 523 60.2
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.2e-178 630.6 498 62.2
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 4.5e-178 628.6 515 62.1
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 5.9e-178 628.2 465 65.2
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 1.3e-177 627.1 485 62.9
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 5.0e-177 625.2 470 66.2
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 8.6e-177 624.4 526 61.0
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 1.5e-176 623.6 474 63.7
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 1.9e-176 623.2 512 61.7
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 8.0e-175 617.8 518 60.6
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.0e-174 617.5 496 62.1
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 1.0e-174 617.5 506 63.4
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.5e-173 613.6 524 59.4
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 7.8e-170 601.3 518 61.2
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 4.7e-167 592.0 443 66.1
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 2.3e-166 589.7 496 59.1
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 3.1e-166 589.3 512 59.4
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.9e-164 582.8 491 60.1
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.0e-162 576.6 516 57.6
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 7.8e-162 574.7 425 67.8
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.0e-161 574.3 478 59.6
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 5.0e-161 572.0 461 60.7
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 8.9e-158 561.2 472 61.7
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.2e-157 560.8 425 65.4
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 9.5e-152 541.2 461 56.2
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.2e-149 534.3 527 55.6
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 3.4e-149 532.7 508 54.9
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 7.3e-144 515.0 333 74.5
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 3.4e-133 479.6 514 52.1
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.0e-129 468.0 358 65.6
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 2.3e-129 466.8 476 48.7
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 3.9e-129 466.1 330 68.8
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 6.2e-127 458.8 320 70.3
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.8e-126 457.2 453 49.7
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.6e-122 444.1 332 67.5
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 3.9e-121 439.5 445 48.8
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 9.3e-115 418.3 332 65.1
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.1e-110 404.8 423 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.1e-102 376.7 423 45.6
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 7.7e-101 372.1 316 56.0
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 5.7e-96 355.9 278 64.7
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 4.5e-93 346.3 254 67.7
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.1e-91 341.7 422 44.5
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.4e-91 341.3 211 76.3
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.9e-85 319.3 423 44.0
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 2.7e-77 293.9 279 55.9
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 1.2e-72 278.5 484 36.2
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 5.7e-72 276.2 211 64.0
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 5.0e-52 209.9 531 30.3
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 1.3e-47 195.3 136 67.6
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 8.3e-47 192.6 172 57.6
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.6e-26 125.2 94 68.1
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 2.6e-24 117.9 89 65.2
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 5.4e-22 110.2 463 25.7
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.3e-19 100.5 65 69.2
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 9.6e-19 99.4 69 63.8
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 3.6e-18 97.4 82 54.9
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 5.3e-17 93.6 107 51.4
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.2e-16 92.4 241 27.8
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.2e-16 92.4 380 24.7
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 9.3e-14 82.8 79 48.1
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 6.0e-13 80.1 78 51.3
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 4.3e-11 73.9 79 51.9
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 5.3e-09 67.0 112 42.0
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 9.9e-08 62.8 58 55.2
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 1.3e-07 62.4 36 72.2
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 9.3e-06 56.2 54 48.1


User provided reference genes

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