Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 4138.6 2083 100.0
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 3050.4 2318 71.2
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2966.8 1991 78.4
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 2766.1 2211 66.6
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2682.9 2126 66.4
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2425.6 2137 60.1
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2389.0 2138 59.5
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2378.6 2140 59.4
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2360.5 2139 59.2
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2314.3 2138 58.4
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2300.4 2140 56.8
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2283.4 2168 57.5
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2261.1 2147 56.6
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2239.9 2137 55.7
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2232.6 2130 55.0
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2211.4 2142 55.8
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2211.0 2144 56.2
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2204.1 2142 54.4
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2203.7 2135 54.1
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2201.0 2143 55.2
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2200.6 2132 55.4
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2197.5 2132 54.6
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2194.5 2145 54.2
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2192.2 2133 55.6
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2187.9 2128 54.1
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2177.5 2129 53.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2176.7 2128 53.9
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2172.9 2127 53.9
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2159.4 2132 53.6
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2156.3 2143 53.4
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2147.9 2029 56.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2147.5 2143 53.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2146.7 2137 54.5
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2142.1 2125 54.9
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2136.7 2140 53.0
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2133.6 2116 53.7
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2130.9 2137 53.6
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2127.1 2139 53.2
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2124.4 2121 53.5
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2113.6 2331 50.6
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2107.0 2135 53.3
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2085.5 2148 52.5
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2077.0 2162 52.6
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2071.6 2127 53.2
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2069.7 2148 52.0
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2069.3 2123 52.8
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2064.3 2138 52.7
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2055.8 2135 52.6
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2048.1 2136 50.8
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2038.1 2135 50.7
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2036.2 1999 54.4
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2034.6 2412 47.2
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2034.2 2147 51.3
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2018.8 2139 52.0
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2016.5 2130 51.4
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2015.7 2136 51.1
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2008.8 2144 51.4
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2007.3 2137 52.4
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2006.9 2147 51.1
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1999.2 2165 50.6
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1999.2 2140 50.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1994.2 1888 55.8
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1993.4 2134 50.5
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1988.8 2140 50.5
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1988.4 2152 50.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1987.2 2136 50.7
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1980.3 2167 50.1
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1972.2 2162 50.0
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1970.3 2136 50.4
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1961.8 2161 51.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1931.4 2113 50.4
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1909.4 1778 57.6
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1882.1 2098 50.5
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1876.7 2171 48.8
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1842.8 1904 52.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1830.1 2096 48.5
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1781.5 2167 46.2
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1493.0 1435 56.0
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1438.3 1335 57.7
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1372.8 1323 55.0
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1317.8 1900 40.1
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1196.4 1509 45.8
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1173.3 2248 34.4
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1161.4 2193 34.7
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1117.1 1238 50.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1094.7 2218 33.4
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 7.7e-308 1061.6 1319 46.8
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 4.8e-302 1042.3 1060 53.4
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.4e-261 907.9 2151 31.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 6.9e-248 862.4 907 51.0
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 7.6e-247 859.0 796 56.8
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 6.4e-246 855.9 887 51.9
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 6.0e-244 849.4 1075 46.1
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 9.6e-234 815.5 1026 45.6
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 8.5e-222 775.8 1180 40.8
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.2e-220 771.9 1093 42.0
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 2.2e-185 654.8 543 62.1
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 2.7e-183 647.9 677 52.9
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.1e-157 562.8 601 50.9
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 3.9e-150 537.7 521 51.6
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.4e-147 529.3 623 48.8
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.6e-132 479.2 474 53.8
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.9e-129 468.4 671 41.6
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 2.7e-127 461.8 454 53.7
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.2e-119 436.4 494 48.0
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 5.3e-115 421.0 871 33.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 7.2e-112 410.6 292 68.2
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.7e-100 372.9 341 59.5
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.0e-94 353.6 216 79.2
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.7e-92 346.3 392 47.2
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.8e-91 342.8 371 52.0
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.8e-78 299.7 284 56.3
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 3.4e-77 295.4 355 44.2
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.1e-71 274.6 233 61.4
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 9.5e-64 250.8 236 55.5
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 5.4e-59 235.0 197 60.4
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 1.7e-57 229.9 197 59.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 7.5e-53 214.5 312 43.3
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.3e-48 198.7 318 37.7
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 7.3e-48 198.0 304 39.1
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 2.2e-44 186.4 538 29.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 1.6e-39 170.2 178 46.6
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.8e-30 140.2 141 48.9
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.9e-30 138.3 143 51.7
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.5e-29 137.1 159 49.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 1.7e-28 133.7 125 52.0
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 3.8e-28 132.5 308 33.4
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.1e-27 131.0 148 47.3
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 1.2e-26 127.5 101 56.4
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 8.7e-25 121.3 96 64.6
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 8.7e-25 121.3 319 30.7
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 4.3e-24 119.0 93 61.3
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 6.2e-23 115.2 294 31.3
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.5e-21 110.5 101 58.4
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 2.6e-21 109.8 142 44.4
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 7.9e-18 98.2 96 49.0
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.0e-17 97.8 222 33.8
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 2.5e-16 93.2 150 38.0
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.8e-15 89.7 74 55.4
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 2.8e-15 89.7 74 55.4
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.2e-15 88.6 74 54.1
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 4.0e-14 85.9 75 53.3
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 2.6e-13 83.2 121 38.0
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.4e-13 82.8 163 38.7
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 1.7e-12 80.5 209 27.8
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 2.9e-12 79.7 119 37.8
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 3.8e-12 79.3 96 45.8
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 4.9e-12 79.0 88 44.3
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.2e-11 76.3 110 47.3
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 7.9e-10 71.6 50 62.0
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 8.7e-09 68.2 46 71.7
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.5e-08 67.4 117 37.6
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 1.5e-08 67.4 117 37.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 5.6e-08 65.5 95 41.1
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 5.6e-08 65.5 72 44.4
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 7.4e-08 65.1 53 54.7
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.3e-07 64.3 126 28.6
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 8.2e-07 61.6 206 31.6
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 5.3e-06 58.9 64 43.8


User provided reference genes

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