Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.7e-291 1003.4 479 100.0
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.5e-254 882.5 444 93.9
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.9e-240 833.6 445 88.1
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.4e-236 822.8 444 86.9
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.4e-236 822.8 444 86.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 2.5e-225 785.4 444 83.8
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 5.7e-222 774.2 444 82.2
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 3.4e-219 765.0 444 80.9
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 3.0e-215 751.9 435 81.4
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 5.1e-215 751.1 444 79.1
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 2.0e-214 749.2 457 77.7
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.2e-213 745.7 444 80.4
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.2e-213 745.7 444 79.7
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 2.2e-213 745.7 444 79.1
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.3e-213 744.2 444 77.7
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 8.2e-213 743.8 447 79.4
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 1.1e-212 743.4 444 78.4
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.4e-212 742.3 444 79.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.2e-211 740.0 446 77.8
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 1.7e-210 736.1 444 76.8
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.9e-209 732.6 444 77.3
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 2.5e-209 732.3 451 76.5
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 4.2e-209 731.5 462 74.7
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 3.6e-208 728.4 461 75.5
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.4e-207 726.5 440 78.4
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 5.1e-207 724.5 447 77.2
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 5.1e-207 724.5 461 76.6
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 5.1e-207 724.5 462 74.0
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 8.8e-207 723.8 444 76.1
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.1e-206 723.4 440 77.7
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 1.3e-205 719.9 441 76.9
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 1.7e-205 719.5 456 74.6
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 2.4e-204 715.7 434 77.2
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.1e-204 715.3 445 75.7
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 4.1e-204 714.9 444 75.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 5.3e-204 714.5 445 76.9
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.2e-203 713.4 448 75.9
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.6e-203 712.2 457 75.1
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.5e-201 705.7 468 72.2
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.5e-201 704.5 444 77.0
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 9.4e-201 703.7 444 74.3
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 3.6e-200 701.8 444 75.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 4.7e-200 701.4 444 73.4
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 8.0e-200 700.7 439 74.9
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.9e-199 698.4 402 80.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 5.2e-199 698.0 444 74.3
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.5e-198 696.4 492 68.5
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.5e-198 696.4 444 73.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 5.3e-196 688.0 432 75.2
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.2e-195 686.8 442 71.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 1.6e-195 686.4 444 73.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 7.7e-195 684.1 444 72.3
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.7e-194 682.9 459 71.7
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.2e-194 682.6 427 75.4
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 5.0e-194 681.4 448 73.7
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.2e-193 678.7 447 72.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 7.2e-193 677.6 447 72.0
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.4e-193 677.2 447 72.0
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.7e-192 675.6 430 75.1
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.7e-192 674.9 460 71.1
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 8.0e-192 674.1 447 71.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-191 673.3 448 72.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 6.8e-191 671.0 440 72.7
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 8.8e-191 670.6 440 72.5
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.4e-190 668.7 444 70.9
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 7.5e-190 667.5 441 73.0
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 9.8e-190 667.2 440 72.7
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 3.7e-189 665.2 444 70.5
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 6.3e-189 664.5 430 73.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 6.3e-189 664.5 416 75.5
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 1.6e-187 659.8 444 69.6
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 4.5e-187 658.3 445 71.7
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 1.7e-186 656.4 462 68.6
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.8e-186 655.2 456 69.1
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 3.2e-185 652.1 384 78.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 8.0e-184 647.5 438 68.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.8e-183 646.4 494 64.8
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 6.8e-183 644.4 368 80.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 5.7e-182 641.3 454 69.2
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 6.3e-181 637.9 395 75.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.5e-179 631.7 403 73.9
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 1.7e-178 629.8 460 65.9
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 3.6e-176 622.1 451 65.4
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 4.7e-176 621.7 445 65.6
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.7e-176 621.7 444 64.4
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 8.0e-176 620.9 460 67.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 5.2e-175 618.2 445 64.9
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.2e-174 617.1 446 64.8
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.6e-174 615.9 475 65.3
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 3.7e-173 612.1 445 65.2
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.4e-172 610.1 446 63.7
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 2.7e-171 605.9 447 65.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 4.6e-171 605.1 451 67.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.0e-170 604.0 448 63.4
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-170 603.2 448 63.4
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 5.0e-170 601.7 446 63.0
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 5.0e-170 601.7 448 65.8
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 1.5e-169 600.1 448 66.5
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.9e-169 599.7 428 68.2
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 3.3e-169 599.0 450 63.1
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 3.3e-169 599.0 380 76.3
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 4.3e-169 598.6 448 62.9
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 4.3e-169 598.6 448 62.9
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 6.2e-168 594.7 441 64.6
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 1.2e-166 590.5 475 59.6
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 7.5e-166 587.8 449 62.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 2.7e-163 579.3 427 64.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.8e-159 566.6 544 55.7
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 7.5e-158 561.2 434 62.7
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 1.7e-154 550.1 491 56.4
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 3.7e-149 532.3 390 64.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 8.4e-149 531.2 450 56.4
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.1e-148 528.1 353 71.4
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 7.8e-147 524.6 429 58.7
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 1.3e-146 523.9 420 57.9
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 3.0e-146 522.7 421 57.7
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 4.6e-131 472.2 470 57.0
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 3.6e-128 462.6 331 68.3
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 6.2e-128 461.8 440 54.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 4.2e-124 449.1 463 52.1
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 5.5e-124 448.7 475 50.7
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 8.1e-120 434.9 355 60.0
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 6.9e-119 431.8 355 58.9
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.8e-117 426.0 273 72.9
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 4.9e-117 425.6 296 70.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.5e-110 404.1 277 69.0
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 6.5e-109 398.7 384 49.7
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.5e-105 387.5 405 53.1
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 1.7e-96 357.5 206 77.2
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 7.7e-94 348.6 435 41.8
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 1.9e-92 344.0 430 43.5
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 4.2e-84 316.2 285 58.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 1.6e-75 287.7 206 68.9
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 4.8e-72 276.2 171 77.2
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.7e-56 223.4 119 84.0
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 3.2e-55 220.3 204 52.5
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.3e-53 214.9 223 51.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.9e-45 186.8 157 59.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-43 181.8 225 52.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.9e-40 170.6 265 41.9
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-39 168.7 263 41.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 2.3e-37 161.0 234 38.9
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 7.3e-36 156.0 85 81.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 1.2e-35 155.2 206 44.7
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 4.0e-34 150.2 94 75.5
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 5.1e-29 133.3 265 36.2
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 5.6e-28 129.8 96 62.5
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 2.6e-25 120.9 67 80.6
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.3e-20 104.0 95 55.8
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 6.2e-19 99.8 70 68.6
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 8.1e-19 99.4 122 41.8
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.1e-18 97.4 70 67.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.5e-14 84.0 96 53.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.4e-10 71.2 36 88.9
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 9.0e-10 69.3 43 69.8
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.0e-09 68.2 49 67.3
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 7.1e-07 59.7 53 60.4


User provided reference genes

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