Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 6.7e-78 293.9 143 100.0
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 4.7e-31 138.3 82 84.1
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.1e-23 112.8 86 70.9
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 3.4e-21 105.5 86 69.8
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 4.6e-18 95.1 85 57.6
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 2.5e-16 89.4 88 55.7
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 5.6e-16 88.2 86 55.8
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 9.5e-16 87.4 84 57.1
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.6e-15 86.7 89 56.2
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 2.1e-15 86.3 81 58.0
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.8e-15 85.9 70 67.1
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.4e-14 83.6 80 53.8
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 3.1e-14 82.4 81 53.1
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 6.8e-14 81.3 86 51.2
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 8.9e-14 80.9 80 51.2
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 3.4e-13 79.0 85 49.4
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 3.4e-13 79.0 88 52.3
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 5.8e-13 78.2 98 49.0
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.7e-12 76.6 84 50.0
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 2.2e-12 76.3 83 50.6
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 3.7e-12 75.5 82 50.0
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.7e-12 75.5 86 52.3
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 4.9e-12 75.1 85 51.8
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 6.4e-12 74.7 84 48.8
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 8.3e-12 74.3 94 47.9
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.9e-11 73.2 84 47.6
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 3.2e-11 72.4 84 47.6
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 9.2e-11 70.9 84 46.4
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.7e-10 69.3 84 46.4
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 2.7e-10 69.3 83 48.2
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.5e-10 68.9 83 48.2
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.6e-10 68.6 82 46.3
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 4.6e-10 68.6 83 49.4
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 4.6e-10 68.6 86 44.2
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 1.0e-09 67.4 75 49.3
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 1.3e-09 67.0 95 44.2
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-09 67.0 84 51.2
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 1.7e-09 66.6 76 44.7
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 2.3e-09 66.2 85 47.1
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 3.9e-09 65.5 84 41.7
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 3.9e-09 65.5 83 43.4
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 3.9e-09 65.5 73 49.3
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 5.1e-09 65.1 75 49.3
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 5.1e-09 65.1 87 44.8
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.9e-08 63.2 94 44.7
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 2.5e-08 62.8 84 41.7
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 2.5e-08 62.8 85 44.7
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 2.5e-08 62.8 81 43.2
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 3.3e-08 62.4 80 43.8
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 3.3e-08 62.4 77 45.5
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 4.3e-08 62.0 85 41.2
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 5.6e-08 61.6 87 48.3
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 9.5e-08 60.8 87 43.7
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 9.5e-08 60.8 87 42.5
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 9.5e-08 60.8 82 45.1
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 2.1e-07 59.7 83 39.8
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.8e-07 59.3 87 42.5
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 2.8e-07 59.3 88 42.0
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 3.6e-07 58.9 82 45.1
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 3.6e-07 58.9 88 42.0
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 3.6e-07 58.9 88 42.0
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 3.6e-07 58.9 82 41.5
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 3.6e-07 58.9 77 46.8
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 3.6e-07 58.9 82 47.6
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 8.1e-07 57.8 95 37.9
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 8.1e-07 57.8 87 40.2
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 1.1e-06 57.4 82 41.5
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 1.1e-06 57.4 82 43.9
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 1.8e-06 56.6 74 41.9
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.8e-06 56.6 85 43.5
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 2.4e-06 56.2 81 43.2
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 2.4e-06 56.2 79 44.3
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 2.4e-06 56.2 76 42.1
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 3.1e-06 55.8 69 44.9
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 4.0e-06 55.5 88 42.0
PGSC0003DMG400006901 Solanum tuberosum HOM05D028751 ORTHO05D030265 5.2e-06 55.1 85 44.7
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 8.9e-06 54.3 85 40.0
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 8.9e-06 54.3 80 42.5
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 8.9e-06 54.3 77 41.6


User provided reference genes

Program Settings