Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 4595.0 2300 100.0
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 4475.6 2272 98.9
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 4323.9 2270 96.0
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 3936.3 2407 83.3
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 3855.8 2463 82.5
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 3365.9 2233 76.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3315.0 2232 75.6
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 3306.2 2233 75.5
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 3215.2 2233 73.6
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2841.6 2234 65.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2833.5 2231 65.8
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2828.9 2237 65.7
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2825.4 2244 65.5
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2811.9 2242 65.4
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2786.9 2248 64.5
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2758.0 2236 64.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2750.3 2243 63.3
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2742.6 2245 63.6
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2732.2 2233 63.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2724.1 2244 63.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2714.5 2212 63.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2708.7 2233 63.1
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2696.8 2256 63.0
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2688.3 2250 62.9
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2679.4 2243 62.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2672.5 2242 62.8
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2665.6 2242 63.0
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2664.0 2235 62.5
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2662.9 2235 62.4
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2655.9 2231 62.5
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2650.2 2236 61.9
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2636.3 2228 62.3
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2635.9 2231 62.2
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2634.4 2240 60.9
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2634.0 2228 62.2
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2616.3 2253 61.3
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2614.7 2246 61.8
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2608.9 2237 61.2
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2590.1 2242 60.4
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2586.6 2232 60.4
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2578.5 2245 61.1
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2577.7 2232 60.8
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2570.8 2235 60.1
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2567.7 2230 60.4
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2565.8 2243 60.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2563.1 2239 60.4
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2553.9 2236 60.2
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2547.3 2235 60.1
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2545.4 2242 59.6
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2541.1 2241 60.3
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2537.7 2244 60.2
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2528.1 2267 59.9
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2527.7 2232 60.8
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2526.1 2239 59.9
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2524.2 2245 60.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2521.5 2232 59.5
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2509.9 2245 60.2
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2508.4 2241 60.2
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2505.3 2245 59.9
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2482.2 2241 59.0
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2481.1 2236 59.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2478.0 2237 58.8
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2473.7 2229 58.6
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2464.5 2228 58.6
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2459.9 2229 58.2
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2457.9 2240 59.0
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2446.8 2230 57.8
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2383.6 2265 56.6
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2379.0 2251 58.4
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2363.6 2233 57.4
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2355.5 2236 57.4
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2352.8 2234 57.6
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2347.0 2237 57.7
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2347.0 2237 57.7
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2342.4 2240 57.2
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2335.1 2232 57.5
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2335.1 2232 57.5
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2315.4 1830 64.6
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2313.9 2244 56.7
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2303.5 1901 62.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2302.3 1828 65.4
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2256.5 1827 64.8
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2232.2 2235 55.9
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2172.9 2062 57.9
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2161.3 2322 51.9
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2109.3 1716 64.5
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 2107.0 2244 52.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2082.8 2261 52.1
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2080.8 2233 52.5
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1864.0 1056 90.8
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1797.7 1431 65.5
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1776.5 2394 44.4
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1679.5 1390 64.2
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1588.5 1710 51.7
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1505.7 1019 79.3
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1447.2 2192 41.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1429.5 2370 39.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1395.9 2383 38.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1298.1 1129 60.5
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1297.7 2276 36.9
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1238.8 1028 62.5
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1231.9 1200 56.2
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1178.7 942 64.2
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1117.1 1433 46.4
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 1.4e-294 1017.7 800 66.8
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 6.8e-265 919.1 3037 27.8
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 4.5e-232 810.1 864 51.5
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.2e-222 777.3 733 57.6
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.2e-215 754.6 1366 38.2
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 5.2e-172 610.5 1007 40.7
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.1e-158 566.2 2481 26.9
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.4e-137 496.1 448 56.0
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 9.0e-108 397.1 379 56.2
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-84 320.1 328 53.0
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 9.4e-81 307.4 759 31.2
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.4e-76 292.7 316 50.0
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 2.9e-74 285.8 290 59.0
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 5.9e-67 261.5 234 56.8
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.8e-66 258.8 328 46.6
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 4.7e-56 225.3 233 51.9
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.2e-53 216.5 175 67.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 3.2e-52 212.6 284 45.1
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 6.6e-42 178.3 143 67.1
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 5.2e-39 168.7 223 44.4
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 2.7e-35 156.4 95 81.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.9e-33 150.2 148 54.7
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.2e-32 145.2 514 25.9
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.1e-28 134.4 289 33.2
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 4.6e-27 129.0 97 66.0
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.3e-26 126.7 113 55.8
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 6.9e-23 115.2 106 61.3
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 9.0e-15 88.2 101 44.6
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 3.1e-07 63.2 338 23.4
Thecc.08G172300 Theobroma cacao HOM05D005746 ORTHO05D007105 7.6e-06 58.5 59 54.2


User provided reference genes

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