Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.2e-263 911.8 467 100.0
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.2e-80 304.7 376 50.5
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-79 300.8 459 47.1
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.9e-77 293.5 375 48.8
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 3.5e-75 286.6 375 48.0
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 6.0e-75 285.8 375 48.5
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.0e-74 285.0 375 48.0
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 1.0e-74 285.0 375 48.3
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.3e-74 284.6 375 48.3
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 3.9e-74 283.1 375 47.2
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 3.9e-74 283.1 380 48.2
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 6.6e-74 282.3 349 50.4
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 1.1e-73 281.6 380 48.4
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.1e-73 281.6 375 47.5
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.9e-73 280.8 375 47.5
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 4.3e-73 279.6 389 46.5
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.3e-73 279.6 375 46.4
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 5.6e-73 279.3 374 47.6
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 5.6e-73 279.3 375 47.5
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 7.3e-73 278.9 375 47.2
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 7.3e-73 278.9 375 47.5
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 7.3e-73 278.9 376 47.1
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 7.3e-73 278.9 375 47.2
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 9.5e-73 278.5 375 46.4
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.6e-72 277.7 380 46.6
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 2.1e-72 277.3 375 47.2
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 2.8e-72 276.9 376 47.1
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 2.8e-72 276.9 375 46.1
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.8e-72 276.9 371 46.6
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 3.6e-72 276.6 375 46.7
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 3.6e-72 276.6 375 46.1
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 3.6e-72 276.6 371 47.2
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 4.7e-72 276.2 371 46.9
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 6.2e-72 275.8 378 46.6
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.1e-71 275.0 375 46.1
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.8e-71 274.2 375 46.7
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 2.3e-71 273.9 375 46.1
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.3e-71 273.9 375 46.4
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 3.1e-71 273.5 375 46.4
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 3.1e-71 273.5 356 48.3
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 4.0e-71 273.1 375 47.2
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 5.2e-71 272.7 371 46.6
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 6.8e-71 272.3 371 46.6
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 6.8e-71 272.3 375 45.9
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 6.8e-71 272.3 356 48.0
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 8.9e-71 271.9 375 46.4
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 8.9e-71 271.9 370 46.8
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 8.9e-71 271.9 375 46.1
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.5e-70 271.2 375 46.9
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.5e-70 271.2 375 46.9
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.5e-70 271.2 375 46.9
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.5e-70 271.2 375 45.9
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 2.0e-70 270.8 375 46.1
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 2.6e-70 270.4 375 46.1
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 2.6e-70 270.4 375 46.1
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 2.6e-70 270.4 377 46.4
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 2.6e-70 270.4 377 46.4
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 2.6e-70 270.4 375 45.9
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 3.4e-70 270.0 376 46.5
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 3.4e-70 270.0 375 45.9
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 3.4e-70 270.0 375 46.1
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 4.4e-70 269.6 375 45.9
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 4.4e-70 269.6 375 46.9
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 7.5e-70 268.9 376 46.3
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 9.8e-70 268.5 375 46.1
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.7e-69 267.7 375 46.7
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.7e-69 267.7 376 46.3
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 1.7e-69 267.7 375 46.1
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 2.2e-69 267.3 376 46.3
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 2.2e-69 267.3 375 45.6
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 2.9e-69 266.9 401 45.6
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.9e-69 266.9 375 45.3
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.9e-69 266.9 375 45.3
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 4.9e-69 266.2 376 46.3
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 4.9e-69 266.2 353 47.0
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 6.4e-69 265.8 381 45.4
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 6.4e-69 265.8 377 45.4
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.1e-68 265.0 375 45.6
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-68 264.6 375 45.1
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.4e-68 264.6 375 45.9
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 1.4e-68 264.6 375 45.6
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.4e-68 264.6 377 45.1
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 2.4e-68 263.8 376 46.5
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.4e-68 263.8 375 45.1
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 2.4e-68 263.8 376 45.7
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 3.2e-68 263.5 375 45.6
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 4.1e-68 263.1 375 44.5
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 4.1e-68 263.1 375 44.8
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 4.1e-68 263.1 349 47.3
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 5.4e-68 262.7 352 46.9
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 5.4e-68 262.7 353 47.6
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 7.1e-68 262.3 375 44.5
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 7.1e-68 262.3 375 44.5
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 1.2e-67 261.5 375 45.1
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 2.1e-67 260.8 375 44.8
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 7.8e-67 258.8 379 44.3
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.0e-66 258.5 370 44.9
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.0e-66 258.5 354 47.2
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 2.3e-66 257.3 377 44.8
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.0e-66 256.9 375 44.8
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.0e-66 256.9 375 44.8
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 3.0e-66 256.9 349 46.1
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 3.9e-66 256.5 350 46.6
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 3.9e-66 256.5 350 46.6
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 5.1e-66 256.1 357 46.2
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 5.1e-66 256.1 350 46.6
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 5.1e-66 256.1 372 45.2
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 8.6e-66 255.4 349 46.4
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.1e-65 255.0 349 46.4
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.1e-65 255.0 375 44.8
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.1e-65 255.0 375 44.8
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.5e-65 254.6 349 46.4
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.5e-65 253.8 371 44.5
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 3.3e-65 253.4 337 47.5
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 2.3e-63 247.3 376 43.6
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 5.2e-63 246.1 338 45.6
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 7.6e-62 242.3 376 44.4
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 1.7e-61 241.1 346 45.7
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 2.9e-61 240.4 365 44.1
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 2.9e-61 240.4 349 43.8
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 1.1e-60 238.4 378 41.5
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 2.7e-59 233.8 350 43.4
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 6.0e-59 232.6 340 42.6
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.0e-58 231.9 348 44.0
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.3e-58 231.5 340 45.9
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 2.3e-58 230.7 338 44.4
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 8.6e-58 228.8 291 47.1
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 8.6e-58 228.8 341 42.2
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 1.9e-57 227.6 273 49.1
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 1.6e-56 224.6 341 42.2
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 5.2e-55 219.5 345 41.7
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 4.4e-54 216.5 241 53.1
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 2.4e-52 210.7 348 41.4
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 4.2e-52 209.9 398 37.7
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 2.7e-51 207.2 335 40.3
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 6.0e-51 206.1 338 40.2
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.7e-50 204.5 221 53.8
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.2e-48 196.1 350 38.3
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 6.2e-48 196.1 204 53.4
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 1.3e-45 188.3 333 38.7
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 3.8e-45 186.8 204 52.0
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 1.7e-42 177.9 355 38.3
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 2.3e-42 177.6 243 45.7
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 1.8e-34 151.4 85 83.5
vmacro05503 Vaccinium macrocarpon HOM05D002996 ORTHO05D004756 3.3e-33 147.1 79 87.3
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.3e-32 145.2 204 47.5
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 3.1e-31 140.6 204 45.6
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.5e-30 136.7 201 45.8
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 1.0e-29 135.6 340 32.4
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.6e-27 128.3 140 52.9
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.5e-27 127.1 140 52.9
Zm00001eb125510 Zea mays HOM05D002996 ORTHO05D003536 1.0e-26 125.6 75 77.3
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 5.1e-26 123.2 342 29.8
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 8.2e-24 115.9 160 44.4
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 5.9e-22 109.8 159 44.7
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.0e-21 109.0 121 54.5
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 5.0e-21 106.7 155 41.9
HanXRQChr06g0182761 Helianthus annuus HOM05D002996 ORTHO05D003536 4.2e-20 103.6 96 55.2
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 6.1e-19 99.8 156 42.9
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.8e-15 88.2 88 52.3
DCAR_010737 Daucus carota HOM05D002996 ORTHO05D003536 2.6e-14 84.3 173 37.6
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 5.9e-14 83.2 86 52.3
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 1.7e-13 81.6 130 41.5
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 1.4e-12 78.6 45 80.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 2.5e-12 77.8 45 77.8
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 4.2e-12 77.0 45 77.8
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 4.6e-11 73.6 66 57.6
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.8e-10 71.6 43 88.4
Cpa.g.c35938 Carica papaya HOM05D002996 ORTHO05D003536 2.3e-10 71.2 43 88.4
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 2.3e-10 71.2 43 88.4
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 3.9e-10 70.5 141 35.5
PSO407G0426 Papaver somniferum HOM05D002996 ORTHO05D003536 7.4e-09 66.2 43 79.1
Zm00001eb156170 Zea mays HOM05D002996 ORTHO05D025899 9.7e-09 65.9 39 79.5
Zm00001eb156180 Zea mays HOM05D002996 ORTHO05D004756 9.7e-09 65.9 39 79.5
TPR.G1005 Trifolium pratense HOM05D002996 ORTHO05D003536 4.8e-08 63.5 172 32.6
Lsat_1_v5_gn_8_84061 Lactuca sativa HOM05D002292 ORTHO05D003256 1.4e-07 62.0 40 77.5
Ah.03g135660 Amaranthus hybridus HOM05D002996 ORTHO05D003536 3.1e-07 60.8 42 76.2
Lsat_1_v5_gn_9_17080 Lactuca sativa HOM05D002996 ORTHO05D003536 5.3e-07 60.1 44 70.5
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 5.3e-07 60.1 101 37.6
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 4.5e-06 57.0 39 64.1


User provided reference genes

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