Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05504 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.2e-82 309.7 151 100.0
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 8.4e-47 190.7 150 70.7
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 5.1e-28 128.3 97 68.0
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 6.7e-28 127.9 90 70.0
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.1e-27 127.1 96 67.7
CiPaw.03G068900 Carya illinoinensis HOM05D002996 ORTHO05D003536 1.5e-27 126.7 98 68.4
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.5e-27 126.7 97 66.0
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 1.5e-27 126.7 104 63.5
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.5e-27 126.7 96 66.7
Lj2C435G4 Lonicera japonica HOM05D002996 ORTHO05D003536 2.0e-27 126.3 93 68.8
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.0e-27 126.3 96 66.7
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.6e-27 125.9 96 65.6
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 3.3e-27 125.6 96 68.8
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 4.4e-27 125.2 98 66.3
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 4.4e-27 125.2 96 67.7
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 5.7e-27 124.8 96 66.7
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 7.4e-27 124.4 76 76.3
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 7.4e-27 124.4 77 74.0
FAN04G0036 Fragaria x ananassa HOM05D002996 ORTHO05D003536 7.4e-27 124.4 77 74.0
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 7.4e-27 124.4 77 74.0
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 7.4e-27 124.4 77 74.0
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 7.4e-27 124.4 71 85.9
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 7.4e-27 124.4 95 64.2
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 7.4e-27 124.4 97 66.0
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 7.4e-27 124.4 96 65.6
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 9.7e-27 124.0 98 66.3
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 9.7e-27 124.0 76 76.3
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.3e-26 123.6 96 65.6
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.3e-26 123.6 110 61.8
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.3e-26 123.6 96 66.7
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 1.7e-26 123.2 96 64.6
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.7e-26 123.2 96 64.6
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.7e-26 123.2 96 64.6
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 1.7e-26 123.2 96 65.6
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 1.7e-26 123.2 96 65.6
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 2.2e-26 122.9 96 65.6
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 2.8e-26 122.5 96 63.5
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 2.8e-26 122.5 93 67.7
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 3.7e-26 122.1 96 64.6
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 3.7e-26 122.1 96 64.6
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.7e-26 122.1 92 67.4
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 4.8e-26 121.7 96 63.5
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 4.8e-26 121.7 76 73.7
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 4.8e-26 121.7 76 73.7
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 4.8e-26 121.7 85 69.4
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 4.8e-26 121.7 96 65.6
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.3e-26 121.3 76 72.4
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.3e-26 121.3 76 72.4
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 6.3e-26 121.3 76 76.3
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 6.3e-26 121.3 88 71.6
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 8.2e-26 120.9 76 75.0
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 8.2e-26 120.9 96 63.5
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.1e-25 120.6 76 76.3
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.1e-25 120.6 96 63.5
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.1e-25 120.6 96 63.5
Hma1.2p1_0832F.1_g225610 Hydrangea macrophylla HOM05D002996 ORTHO05D003536 1.1e-25 120.6 97 66.0
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 1.1e-25 120.6 76 75.0
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.1e-25 120.6 96 63.5
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.1e-25 120.6 76 72.4
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 1.4e-25 120.2 85 67.1
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.4e-25 120.2 88 70.5
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.4e-25 120.2 96 63.5
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 1.4e-25 120.2 96 63.5
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 1.8e-25 119.8 101 61.4
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 1.8e-25 119.8 95 63.2
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 1.8e-25 119.8 96 65.6
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.4e-25 119.4 76 75.0
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 2.4e-25 119.4 91 68.1
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 3.1e-25 119.0 94 63.8
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 4.1e-25 118.6 76 72.4
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 4.1e-25 118.6 94 61.7
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.1e-25 118.6 96 64.6
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.1e-25 118.6 96 64.6
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.1e-25 118.6 96 64.6
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 4.1e-25 118.6 69 84.1
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 5.3e-25 118.2 74 75.7
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 5.3e-25 118.2 88 67.0
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 5.3e-25 118.2 76 72.4
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 5.3e-25 118.2 88 67.0
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 5.3e-25 118.2 76 72.4
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 5.3e-25 118.2 96 63.5
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 5.3e-25 118.2 96 61.5
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 6.9e-25 117.9 88 65.9
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 6.9e-25 117.9 97 63.9
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 6.9e-25 117.9 97 63.9
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 6.9e-25 117.9 78 73.1
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 9.1e-25 117.5 76 72.4
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 9.1e-25 117.5 76 71.1
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 9.1e-25 117.5 85 68.2
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 9.1e-25 117.5 76 75.0
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 9.1e-25 117.5 93 63.4
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 1.2e-24 117.1 76 73.7
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 1.2e-24 117.1 76 72.4
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.5e-24 116.7 96 64.6
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 1.5e-24 116.7 96 64.6
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.5e-24 116.7 96 60.4
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 1.5e-24 116.7 96 59.4
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 2.0e-24 116.3 90 64.4
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 2.0e-24 116.3 90 64.4
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.0e-24 116.3 76 71.1
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.6e-24 115.9 76 73.7
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 2.6e-24 115.9 96 62.5
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 2.6e-24 115.9 96 59.4
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 2.6e-24 115.9 99 60.6
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 3.4e-24 115.5 97 61.9
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 4.5e-24 115.2 76 69.7
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 4.5e-24 115.2 76 69.7
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 5.9e-24 114.8 76 73.7
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 7.7e-24 114.4 96 62.5
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 7.7e-24 114.4 85 67.1
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 7.7e-24 114.4 92 65.2
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 7.7e-24 114.4 92 65.2
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.3e-23 113.6 77 72.7
Nitab4.5_0000465g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.3e-23 113.6 79 73.4
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.7e-23 113.2 96 63.5
Nitab4.5_0002366g0060 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.7e-23 113.2 78 71.8
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 2.2e-23 112.8 104 56.7
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 2.2e-23 112.8 83 67.5
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 2.9e-23 112.5 83 67.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 3.8e-23 112.1 91 63.7
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.8e-23 112.1 121 54.5
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 6.5e-23 111.3 85 64.7
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 8.5e-23 110.9 73 72.6
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 1.1e-22 110.5 76 71.1
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.9e-22 109.8 76 72.4
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 1.9e-22 109.8 78 67.9
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 4.2e-22 108.6 89 59.6
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 5.5e-22 108.2 89 59.6
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 5.5e-22 108.2 86 68.6
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 1.2e-21 107.1 71 70.4
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.1e-21 106.3 76 65.8
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 4.7e-21 105.1 76 68.4
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 6.1e-21 104.8 85 65.9
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.0e-20 104.0 58 86.2
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 6.7e-20 101.3 71 67.6
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 1.5e-19 100.1 62 72.6
CDE11G1125 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 5.7e-19 98.2 69 71.0
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 7.4e-19 97.8 62 71.0
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 7.4e-19 97.8 62 72.6
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 1.3e-18 97.1 75 65.3
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.3e-18 97.1 81 61.7
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 2.8e-18 95.9 78 57.7
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 6.3e-18 94.7 70 62.9
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.1e-17 94.0 77 61.0
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 1.4e-17 93.6 60 71.7
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.8e-17 93.2 58 74.1
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 5.3e-17 91.7 78 60.3
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 7.0e-17 91.3 58 70.7
GSVIVG01037949001 Vitis vinifera HOM05D002996 ORTHO05D003536 2.6e-16 89.4 76 57.9
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 1.1e-14 84.0 49 81.6
Manes.04G143783 Manihot esculenta HOM05D002996 ORTHO05D003536 4.2e-14 82.0 75 56.0
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 1.2e-13 80.5 55 67.3
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 3.0e-12 75.9 62 61.3
PGSC0003DMG400014175 Solanum tuberosum HOM05D002996 ORTHO05D003536 6.3e-10 68.2 40 75.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 2.4e-09 66.2 34 88.2
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 1.2e-08 63.9 34 85.3
Solyc01g056910.1 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.6e-08 63.5 39 71.8
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 3.5e-08 62.4 63 50.8
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 4.2e-06 55.5 28 85.7


User provided reference genes

Program Settings