Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 5.7e-311 1070.1 554 100.0
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 8.1e-180 634.4 502 67.1
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 2.1e-172 609.8 504 64.1
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 2.3e-166 589.7 501 61.7
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 6.5e-153 545.0 502 57.2
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 6.9e-147 525.0 515 55.3
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.5e-146 523.9 503 55.5
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 4.5e-146 522.3 511 53.8
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 5.0e-145 518.8 503 55.1
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 5.7e-141 505.4 504 54.0
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 9.7e-141 504.6 502 53.8
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 1.7e-140 503.8 505 53.9
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 3.1e-139 499.6 503 54.3
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 1.2e-138 497.7 503 53.5
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.0e-137 494.6 503 53.3
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 1.3e-137 494.2 504 52.6
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 1.7e-137 493.8 538 52.4
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 5.0e-137 492.3 504 53.6
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 6.5e-137 491.9 542 50.7
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 1.9e-136 490.3 494 53.2
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 3.2e-136 489.6 505 53.1
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 3.2e-136 489.6 503 53.3
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 5.5e-136 488.8 502 52.6
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 7.2e-136 488.4 504 52.2
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 1.2e-135 487.6 503 52.7
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 2.7e-135 486.5 503 50.7
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 4.7e-135 485.7 506 52.8
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 4.7e-135 485.7 503 52.7
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 1.0e-134 484.6 503 50.7
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.4e-134 484.2 503 53.5
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 1.8e-134 483.8 503 51.7
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 3.9e-134 482.6 503 52.5
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 8.8e-134 481.5 503 52.9
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 2.6e-133 479.9 498 51.2
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 3.3e-133 479.6 505 52.9
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 3.3e-133 479.6 503 51.7
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 5.7e-133 478.8 503 52.3
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 7.4e-133 478.4 502 52.2
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 1.3e-132 477.6 503 52.5
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 2.8e-132 476.5 503 53.5
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 8.2e-132 474.9 503 52.1
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.8e-131 473.8 503 51.9
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.1e-131 472.6 503 51.9
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 4.1e-131 472.6 503 52.1
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 9.1e-131 471.5 503 50.1
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 9.1e-131 471.5 504 51.0
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 2.6e-130 469.9 498 52.0
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.5e-130 469.5 503 51.3
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 3.5e-130 469.5 503 52.1
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 4.5e-130 469.2 502 51.6
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 1.3e-129 467.6 496 51.4
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 2.9e-129 466.5 560 47.3
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 3.8e-129 466.1 503 50.5
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 5.0e-129 465.7 502 49.0
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 3.2e-128 463.0 506 51.0
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 3.2e-128 463.0 503 50.5
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 7.2e-128 461.8 503 51.1
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 1.6e-127 460.7 506 50.2
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.6e-127 460.7 502 50.6
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 2.7e-127 459.9 503 50.7
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 6.1e-127 458.8 503 49.3
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 8.0e-127 458.4 506 50.6
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 8.0e-127 458.4 503 51.3
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 1.0e-126 458.0 506 50.6
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 1.0e-126 458.0 521 49.5
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 3.9e-126 456.1 503 48.7
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 5.2e-126 455.7 504 50.0
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 4.4e-125 452.6 503 49.7
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 5.7e-125 452.2 505 50.5
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 1.7e-124 450.7 497 49.5
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 3.7e-124 449.5 506 49.6
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 4.8e-124 449.1 504 49.0
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 1.1e-123 448.0 479 52.0
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.8e-123 447.2 506 49.8
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 3.1e-123 446.4 504 49.2
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 9.1e-123 444.9 504 48.8
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 1.6e-122 444.1 503 49.3
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 3.8e-121 439.5 504 48.8
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 5.0e-121 439.1 471 51.8
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.3e-118 430.3 538 46.5
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.4e-117 426.4 494 48.4
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 8.3e-116 421.8 538 45.7
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 1.4e-115 421.0 504 45.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 1.6e-114 417.5 442 50.7
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 7.7e-114 415.2 470 48.9
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 2.2e-108 397.1 296 66.9
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.8e-108 396.0 502 45.4
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.9e-104 384.0 296 63.5
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 1.9e-104 384.0 296 64.9
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 2.5e-104 383.6 464 46.8
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 2.7e-98 363.6 423 47.3
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 4.5e-98 362.8 503 42.5
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 3.4e-85 320.1 510 39.8
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.7e-84 317.8 383 47.8
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.1e-80 305.1 512 35.7
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 3.3e-80 303.5 520 36.7
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 5.2e-78 296.2 244 62.3
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 2.1e-74 284.3 508 35.2
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.9e-72 277.7 379 40.6
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 2.5e-72 277.3 338 47.0
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 1.2e-69 268.5 217 62.2
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 1.2e-66 258.5 323 45.8
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 2.1e-66 257.7 323 46.4
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 7.6e-61 239.2 584 31.0
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 1.5e-56 224.9 483 30.4
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 5.1e-49 199.9 406 32.8
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 3.2e-43 180.6 136 65.4
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 3.0e-33 147.5 417 25.9
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.9e-33 147.1 230 39.6
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 3.3e-32 144.1 110 60.9
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 2.0e-29 134.8 182 41.8
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-28 130.6 171 42.7
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.9e-27 128.3 121 57.0
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.5e-27 127.9 96 65.6
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 2.5e-27 127.9 96 65.6
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-27 127.9 80 75.0
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.2e-27 127.5 96 65.6
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 3.2e-27 127.5 107 60.7
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 5.5e-27 126.7 124 53.2
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.2e-26 125.6 96 64.6
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 4.6e-26 123.6 85 68.2
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.9e-26 122.9 85 68.2
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.9e-25 120.6 107 57.0
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 1.1e-24 119.0 79 70.9
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 6.9e-22 109.8 79 60.8
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 3.8e-20 104.0 68 66.2
QL11p004209 Quercus lobata HOM05D002536 ORTHO05D006290 1.4e-19 102.1 110 49.1
TPR.G3463 Trifolium pratense HOM05D002536 ORTHO05D006290 2.5e-19 101.3 128 46.1
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 2.1e-18 98.2 68 67.6
Gohir.D03G005233 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.1e-17 93.6 62 72.6
Gorai.007G247100 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.1e-17 93.6 62 72.6
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.1e-16 92.4 60 71.7
Gorai.012G115800 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.5e-16 92.0 62 71.0
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 2.8e-15 87.8 68 61.8
Gorai.003G061900 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.4e-14 85.5 62 69.4
Gohir.D10G126550 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-14 85.1 62 67.7
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 1.8e-14 85.1 85 52.9
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 2.4e-14 84.7 64 68.8
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 2.9e-12 77.8 72 59.7
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.1e-10 71.6 107 41.1
SEGI_27826 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 4.0e-09 67.4 64 45.3
TPR.G25728 Trifolium pratense HOM05D002536 ORTHO05D006290 4.0e-09 67.4 115 36.5


User provided reference genes

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