Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 9.5e-198 693.3 357 100.0
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 1.2e-54 218.0 410 41.5
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.6e-51 206.1 358 42.7
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.7e-50 204.1 358 42.7
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 4.0e-47 193.0 341 42.8
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 4.3e-33 146.4 120 66.7
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 5.6e-25 119.4 233 43.3
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 7.4e-25 119.0 354 32.8
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 3.4e-22 110.2 321 33.0
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.5e-21 105.9 321 32.4
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 1.3e-16 91.7 315 32.4
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 4.8e-16 89.7 325 28.9
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 3.8e-13 80.1 103 49.5
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.4e-12 78.2 99 46.5
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 5.5e-12 76.3 297 29.6
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 1.6e-11 74.7 93 46.2
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.1e-11 74.3 51 60.8
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 2.1e-11 74.3 59 52.5
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 2.7e-11 73.9 61 62.3
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 6.1e-11 72.8 116 37.9
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 1.0e-10 72.0 346 26.6
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.0e-10 72.0 107 37.4
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 2.3e-10 70.9 103 46.6
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.3e-10 70.9 86 47.7
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.9e-10 70.1 338 30.5
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 5.1e-10 69.7 355 23.7
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 6.7e-10 69.3 393 25.7
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 1.1e-09 68.6 338 30.5
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.1e-09 68.6 103 38.8
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.1e-09 68.6 104 40.4
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.1e-09 68.6 87 46.0
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 1.5e-09 68.2 92 45.7
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 2.5e-09 67.4 103 38.8
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 2.5e-09 67.4 47 70.2
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 3.3e-09 67.0 149 36.9
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 3.3e-09 67.0 336 28.9
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 3.3e-09 67.0 50 60.0
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 5.7e-09 66.2 250 29.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 5.7e-09 66.2 353 27.2
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 7.4e-09 65.9 87 46.0
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 7.4e-09 65.9 365 24.4
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 7.4e-09 65.9 46 63.0
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.7e-08 64.7 265 27.2
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.7e-08 64.7 62 58.1
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 2.2e-08 64.3 372 26.3
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 2.8e-08 63.9 49 61.2
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 3.7e-08 63.5 87 41.4
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.7e-08 63.5 84 48.8
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 4.8e-08 63.2 48 62.5
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 4.8e-08 63.2 341 27.6
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 4.8e-08 63.2 45 64.4
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 6.3e-08 62.8 171 34.5
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 6.3e-08 62.8 103 36.9
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 6.3e-08 62.8 328 28.4
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 6.3e-08 62.8 63 54.0
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 8.2e-08 62.4 154 34.4
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.1e-07 62.0 219 31.5
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.4e-07 61.6 154 34.4
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.4e-07 61.6 48 62.5
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.4e-07 61.6 333 27.3
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 1.8e-07 61.2 53 54.7
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.8e-07 61.2 106 38.7
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.8e-07 61.2 51 52.9
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.4e-07 60.8 32 84.4
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 2.4e-07 60.8 150 36.0
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 2.4e-07 60.8 171 33.3
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 3.1e-07 60.5 328 29.0
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 4.1e-07 60.1 82 43.9
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 4.1e-07 60.1 82 43.9
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.1e-07 60.1 80 45.0
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 5.3e-07 59.7 46 63.0
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 6.9e-07 59.3 149 34.9
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 9.1e-07 58.9 69 46.4
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 1.2e-06 58.5 46 63.0
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 1.2e-06 58.5 370 26.8
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.2e-06 58.5 58 48.3
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.5e-06 58.2 64 53.1
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 1.5e-06 58.2 61 49.2
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 2.0e-06 57.8 367 26.2
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 2.0e-06 57.8 155 32.3
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.6e-06 57.4 46 60.9
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 4.5e-06 56.6 291 28.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 4.5e-06 56.6 63 50.8
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 4.5e-06 56.6 47 59.6
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 5.9e-06 56.2 327 25.1
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 5.9e-06 56.2 46 60.9
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 5.9e-06 56.2 61 44.3
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 7.7e-06 55.8 102 36.3


User provided reference genes

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