Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 2407.5 1269 100.0
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1809.7 1275 76.2
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1778.1 1274 75.0
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1713.0 1279 71.9
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1709.9 1225 76.7
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1469.1 1288 62.1
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1455.3 1286 61.0
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1440.2 1288 61.2
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1394.8 1285 59.6
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1346.3 1275 57.4
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1337.0 1283 57.4
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1335.5 1283 56.9
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1332.4 1283 57.1
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1331.2 1287 56.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1329.3 1285 57.4
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1328.5 1275 57.1
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1325.1 1269 57.2
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1324.3 1032 70.1
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1322.0 1267 57.4
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1320.1 1278 56.7
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1320.1 1260 57.9
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1315.8 1271 57.2
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1313.5 1260 57.1
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1312.0 1260 57.1
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1311.2 1265 56.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1309.7 1273 56.6
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1305.8 1274 56.2
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1303.9 1276 56.2
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1302.3 1276 56.3
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1302.0 1260 56.5
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1294.3 1270 57.6
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1279.6 1283 55.7
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1275.8 1278 55.2
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1268.4 1294 55.0
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1267.3 1238 56.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1266.1 1280 55.0
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1256.1 1279 56.3
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1255.7 1268 54.6
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1251.5 1212 56.8
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1250.7 1284 54.0
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1249.6 1259 55.4
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1238.4 1275 52.9
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1234.6 1292 54.5
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1233.0 1297 53.7
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1233.0 1284 52.6
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1233.0 1289 54.4
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1231.5 1276 54.4
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1230.7 1290 52.5
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1226.5 1262 55.2
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1221.8 1260 53.6
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1218.0 1267 52.8
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1212.6 1304 52.5
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1123 57.7
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1289 53.2
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1206.4 1290 51.6
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1206.4 1265 52.4
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1204.5 1287 53.1
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1204.5 1277 52.5
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1203.0 1268 52.2
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1201.8 1285 53.2
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1198.7 1329 52.4
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1194.9 1267 53.7
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1189.9 1262 52.1
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1187.2 1263 52.0
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1182.2 1280 52.6
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1181.0 1293 51.7
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1175.6 1262 51.7
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1168.7 1208 52.4
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1154.8 1280 50.5
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1148.7 1277 50.1
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1141.7 1261 52.3
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1139.8 1281 50.1
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1139.0 1278 50.2
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1134.8 1207 53.5
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1130.2 1263 51.4
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1129.8 1275 49.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1125.5 1207 53.4
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1108.2 1286 49.1
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1095.1 1280 48.7
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1092.8 1277 48.6
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1080.1 1276 49.2
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1079.3 960 60.8
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 3.8e-310 1068.5 957 60.7
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 5.2e-307 1058.1 1290 48.1
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 1.1e-304 1050.4 1299 47.7
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.4e-304 1049.3 884 63.2
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 1.5e-298 1030.0 1291 47.0
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 2.4e-288 996.1 1296 46.6
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 4.9e-281 971.8 1277 45.2
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.6e-278 961.4 1238 45.9
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 1.5e-274 950.3 1071 49.1
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 8.4e-257 891.3 999 51.6
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 3.3e-237 826.2 1051 47.9
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 1.2e-234 817.8 1314 39.9
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 2.9e-233 813.1 1249 41.7
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 5.0e-233 812.4 861 53.5
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.6e-226 790.0 1001 46.3
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 1.7e-225 787.3 927 49.4
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 3.8e-225 786.2 1147 41.4
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.1e-177 626.3 891 41.2
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.3e-172 611.7 813 42.8
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.9e-172 610.5 565 57.3
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 3.3e-168 597.0 790 43.0
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 5.6e-160 569.7 1293 32.3
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.2e-156 557.8 797 40.2
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.4e-147 526.6 427 66.0
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.8e-142 511.5 637 44.9
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.2e-122 445.7 365 66.0
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.4e-120 436.4 568 44.2
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 8.5e-108 396.4 476 49.4
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 6.7e-105 386.7 351 61.3
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 4.4e-104 384.0 344 62.5
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.4e-102 378.3 340 62.1
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 6.1e-98 363.6 681 34.9
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.7e-95 355.5 236 76.3
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 9.2e-78 296.6 495 34.3
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 1.2e-69 269.6 484 33.7
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.6e-69 269.2 385 44.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 4.7e-66 257.7 413 39.2
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 2.4e-62 245.4 336 37.8
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.8e-58 231.9 379 40.6
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.2e-49 201.1 292 38.4
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 8.4e-47 193.7 305 38.0
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.7e-37 162.2 174 46.6
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.9e-30 139.4 306 35.0
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.2e-24 120.2 203 40.4
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.5e-24 119.8 119 55.5
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 4.6e-21 108.2 404 26.7
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 9.6e-19 100.5 117 42.7
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 2.8e-18 99.0 117 42.7
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 1.1e-17 97.1 117 41.0
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 6.9e-17 94.4 121 39.7
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 1.8e-12 79.7 145 35.2
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 2.3e-12 79.3 61 63.9


User provided reference genes

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