Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.9e-98 362.5 180 100.0
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 6.1e-60 234.6 187 72.7
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.7e-44 181.8 210 56.2
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.8e-43 179.9 210 55.7
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 1.8e-40 169.9 211 51.2
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 9.1e-40 167.5 213 52.1
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.3e-38 163.7 221 48.4
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 2.2e-38 162.9 211 51.7
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 3.2e-37 159.1 205 49.3
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 7.2e-37 157.9 200 54.5
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 6.1e-36 154.8 200 50.0
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.8e-35 153.3 221 47.1
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 3.0e-35 152.5 202 50.0
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.0e-35 152.1 193 49.7
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 6.8e-35 151.4 216 47.7
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.5e-34 150.2 212 50.5
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 2.6e-34 149.4 214 46.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.6e-34 149.4 212 50.0
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.4e-34 149.1 212 50.0
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.7e-33 146.7 186 52.2
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.7e-33 146.7 221 46.2
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.7e-33 146.7 222 44.6
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.8e-33 146.0 182 52.7
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.7e-33 145.6 199 50.8
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 4.8e-33 145.2 211 47.9
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.1e-32 144.1 190 47.9
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.4e-32 143.7 212 45.3
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.8e-32 143.3 212 46.2
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 2.4e-32 142.9 215 45.6
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.1e-32 142.5 190 53.7
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 5.4e-32 141.7 214 48.1
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 9.1e-32 141.0 199 53.3
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 9.1e-32 141.0 193 51.3
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-31 140.6 190 51.6
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.7e-31 139.4 212 45.3
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.0e-30 137.5 216 46.8
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.0e-30 137.5 222 45.9
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.3e-30 136.3 227 48.0
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 2.5e-29 132.9 215 46.5
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.2e-29 132.1 218 43.1
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 9.5e-29 131.0 194 47.9
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.6e-28 130.2 215 46.0
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 3.6e-28 129.0 194 47.4
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 4.7e-28 128.6 222 41.9
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 6.1e-28 128.3 203 47.8
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.0e-27 127.5 145 59.3
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.0e-27 127.5 187 46.5
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.0e-27 127.5 187 46.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.0e-27 127.5 199 45.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 3.0e-27 125.9 210 44.8
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 3.0e-27 125.9 221 43.9
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.0e-27 125.9 179 47.5
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.2e-26 124.0 196 44.9
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.2e-26 124.0 190 47.9
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.2e-26 124.0 190 47.9
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.2e-26 124.0 218 42.7
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 1.5e-26 123.6 240 41.7
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.0e-26 123.2 135 57.8
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-26 123.2 210 45.2
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 2.6e-26 122.9 207 42.5
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 5.7e-26 121.7 234 43.2
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.3e-25 120.6 216 42.1
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 2.2e-25 119.8 225 40.4
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.2e-25 119.8 218 41.3
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 2.2e-25 119.8 195 44.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 2.2e-25 119.8 193 41.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 2.2e-25 119.8 208 43.3
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.8e-25 119.4 216 42.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 3.7e-25 119.0 237 40.9
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 4.9e-25 118.6 179 43.0
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 6.3e-25 118.2 191 41.4
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 8.3e-25 117.9 186 47.8
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 1.1e-24 117.5 208 41.3
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-24 117.1 216 41.7
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 1.8e-24 116.7 212 42.9
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 5.4e-24 115.2 216 40.3
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.0e-24 114.8 179 41.9
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 7.0e-24 114.8 224 41.1
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 9.2e-24 114.4 183 42.6
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 1.6e-23 113.6 208 42.8
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.0e-23 113.2 190 40.5
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 2.0e-23 113.2 208 42.8
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.0e-23 113.2 221 40.7
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 2.7e-23 112.8 217 39.6
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 3.5e-23 112.5 194 42.3
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 5.9e-23 111.7 180 41.1
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.8e-23 111.3 201 40.8
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.0e-22 110.9 223 40.4
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.0e-22 110.9 193 41.5
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 1.0e-22 110.9 184 44.6
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.3e-22 110.5 191 47.6
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.3e-22 109.8 191 41.9
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 3.8e-22 109.0 167 46.1
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.5e-21 106.3 130 49.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 7.3e-21 104.8 182 41.8
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 7.3e-21 104.8 191 45.5
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 1.6e-20 103.6 146 49.3
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.1e-20 103.2 199 39.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.1e-20 103.2 190 38.9
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.1e-20 103.2 186 41.4
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.6e-20 102.4 197 40.1
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.6e-20 102.4 197 40.1
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 8.0e-20 101.3 200 39.5
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.0e-19 100.9 197 38.1
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.4e-19 100.5 221 39.4
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 2.3e-19 99.8 166 46.4
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 6.8e-19 98.2 191 42.9
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.8e-19 98.2 191 44.5
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.2e-18 97.4 209 38.8
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 3.4e-18 95.9 193 36.8
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 3.4e-18 95.9 193 36.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 3.4e-18 95.9 180 38.3
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.4e-18 95.9 217 34.1
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 5.7e-18 95.1 199 41.7
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 9.8e-18 94.4 118 50.0
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.3e-17 94.0 184 37.0
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.3e-17 94.0 184 37.0
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.3e-17 94.0 184 37.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.2e-17 93.2 193 38.3
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 2.9e-17 92.8 171 44.4
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 4.9e-17 92.0 115 50.4
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.9e-17 92.0 177 33.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.4e-17 91.7 181 37.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 1.1e-16 90.9 227 35.2
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.1e-16 90.9 117 47.9
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 7.0e-16 88.2 213 36.6
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 1.6e-15 87.0 213 37.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-15 87.0 205 36.1
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.6e-15 87.0 205 36.1
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 1.6e-15 87.0 210 39.5
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 1.6e-15 87.0 140 46.4
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 2.0e-15 86.7 192 36.5
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 2.0e-15 86.7 192 36.5
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 5.9e-15 85.1 219 35.2
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 7.8e-15 84.7 194 37.6
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.0e-14 84.3 216 36.1
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.3e-14 84.0 113 45.1
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 3.0e-14 82.8 192 35.4
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.0e-14 82.8 113 44.2
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.0e-14 82.8 113 44.2
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 6.6e-14 81.6 192 35.4
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.6e-14 81.6 129 43.4
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 8.6e-14 81.3 172 41.9
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 8.6e-14 81.3 187 35.8
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-13 80.9 114 46.5
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.5e-13 80.5 114 46.5
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.9e-13 80.1 192 34.9
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 7.3e-13 78.2 164 34.8
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 9.5e-13 77.8 145 44.1
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 2.1e-12 76.6 216 33.3
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.1e-12 76.6 153 38.6
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 3.6e-12 75.9 184 34.2
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 4.7e-12 75.5 206 33.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 8.0e-12 74.7 84 56.0
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 5.2e-11 72.0 149 37.6
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.3e-09 67.4 163 35.0
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.7e-09 65.9 66 56.1
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 6.4e-09 65.1 241 30.3
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 1.9e-08 63.5 198 29.8
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 1.9e-08 63.5 198 27.3
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.4e-08 63.2 198 26.8
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.2e-08 62.8 53 56.6
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 4.1e-08 62.4 192 33.3
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.0e-07 60.1 150 34.7
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 4.6e-07 58.9 133 34.6
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.3e-06 57.4 108 39.8
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.3e-06 56.6 143 39.9
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 2.3e-06 56.6 54 53.7
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 2.3e-06 56.6 176 29.0
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 3.9e-06 55.8 54 57.4
arahy.Tifrunner.gnm1.ann1.PQMP7V Arachis hypogaea HOM05D001536 ORTHO05D001442 5.0e-06 55.5 49 57.1
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 5.0e-06 55.5 158 33.5
Sp1g22180 Schrenkiella parvula HOM05D001536 ORTHO05D001442 6.6e-06 55.1 45 53.3
Dinv19563 Davidia involucrata HOM05D007665 ORTHO05D008293 8.6e-06 54.7 226 29.6


User provided reference genes

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