Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 5.3e-148 527.7 277 100.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 6.0e-83 311.6 280 66.1
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.3e-66 256.5 278 56.8
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.2e-61 240.0 273 56.4
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 2.9e-61 239.6 275 54.5
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 5.5e-52 208.8 277 48.4
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 2.6e-49 199.9 265 47.2
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.3e-48 197.6 277 47.7
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 4.1e-47 192.6 279 48.4
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.3e-42 176.8 278 44.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 3.0e-42 176.4 270 45.9
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 3.9e-42 176.0 268 45.1
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 6.5e-37 158.7 297 41.8
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.2e-36 155.2 290 40.3
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 6.1e-35 152.1 277 40.4
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.0e-34 149.4 267 39.3
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 7.5e-33 145.2 268 39.6
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 9.7e-33 144.8 278 40.6
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.8e-32 143.3 273 38.5
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 4.5e-30 136.0 303 38.6
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.8e-29 132.9 268 38.1
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 6.5e-29 132.1 274 36.9
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 8.5e-29 131.7 266 37.2
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.5e-28 131.0 273 36.3
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.9e-28 130.6 268 37.7
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.5e-28 130.2 274 37.2
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 3.2e-28 129.8 274 37.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 4.2e-28 129.4 273 35.9
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.2e-27 127.9 275 40.7
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 2.1e-27 127.1 274 39.4
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.1e-27 125.6 269 35.3
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 4.0e-26 122.9 273 37.7
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.2e-26 122.5 269 35.7
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.8e-26 122.1 279 37.3
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.5e-25 120.9 267 34.5
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 5.7e-25 119.0 257 39.7
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 7.5e-25 118.6 274 34.7
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 7.5e-25 118.6 273 38.5
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.7e-24 117.5 264 35.2
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.2e-24 117.1 265 35.8
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 3.7e-24 116.3 266 36.5
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 3.7e-24 116.3 269 37.2
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.8e-24 115.9 273 34.8
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 1.4e-23 114.4 273 36.3
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.8e-23 114.0 269 36.8
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.4e-23 113.6 327 33.3
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.4e-23 113.6 327 33.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 3.1e-23 113.2 280 37.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.6e-22 110.9 275 37.1
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.6e-22 110.9 269 36.4
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 5.9e-22 109.0 272 36.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 7.7e-22 108.6 266 35.7
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.0e-21 108.2 269 38.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.0e-21 108.2 276 35.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.0e-21 108.2 265 35.1
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.3e-21 107.8 281 34.2
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-21 107.8 294 34.0
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 2.9e-21 106.7 280 34.6
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 3.8e-21 106.3 291 35.4
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.5e-21 105.5 281 35.2
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 6.5e-21 105.5 258 34.1
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 8.5e-21 105.1 271 34.3
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 3.2e-20 103.2 274 35.0
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 3.2e-20 103.2 279 35.8
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 4.2e-20 102.8 278 32.0
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 4.2e-20 102.8 261 34.5
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 7.2e-20 102.1 280 34.6
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 1.6e-19 100.9 267 33.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 2.8e-19 100.1 277 34.7
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 4.7e-19 99.4 263 32.3
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 8.0e-19 98.6 270 31.9
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 2.3e-18 97.1 270 33.3
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 8.8e-18 95.1 273 33.3
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.2e-17 94.7 276 32.2
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.2e-17 94.7 280 33.2
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 2.6e-17 93.6 267 33.3
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.4e-17 92.8 264 31.1
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 5.7e-17 92.4 281 32.0
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.3e-16 91.3 272 31.2
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 3.7e-16 89.7 253 35.2
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 4.9e-16 89.4 265 32.5
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 6.3e-16 89.0 280 32.1
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.1e-15 88.2 284 30.3
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-15 88.2 273 34.1
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 1.4e-15 87.8 270 30.4
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 1.4e-15 87.8 270 30.4
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.8e-15 87.4 265 31.3
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.4e-15 87.0 276 33.3
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 3.1e-15 86.7 277 31.4
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.1e-15 86.3 265 30.9
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 4.1e-15 86.3 209 35.9
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 5.4e-15 85.9 231 32.9
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 7.0e-15 85.5 275 30.5
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 7.0e-15 85.5 276 30.4
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.2e-14 84.7 268 32.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.6e-14 84.3 268 31.7
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 2.0e-14 84.0 295 31.2
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.7e-14 83.6 286 31.1
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 3.5e-14 83.2 266 30.1
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 3.5e-14 83.2 257 31.5
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.5e-14 83.2 274 29.6
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 4.5e-14 82.8 270 33.0
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 4.5e-14 82.8 261 31.8
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 7.7e-14 82.0 282 29.8
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.0e-13 81.6 281 31.0
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.7e-13 80.9 219 32.9
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.7e-13 80.9 266 31.2
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.9e-13 80.1 262 30.5
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 3.8e-13 79.7 266 30.1
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 6.6e-13 79.0 263 30.4
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 1.1e-12 78.2 276 30.8
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.1e-12 78.2 274 31.8
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.5e-12 77.8 319 28.2
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.3e-12 76.6 264 30.7
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.3e-12 76.3 249 30.9
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 7.3e-12 75.5 293 29.4
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 7.3e-12 75.5 222 32.4
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 7.3e-12 75.5 265 30.6
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 7.3e-12 75.5 257 27.6
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 9.5e-12 75.1 244 30.7
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 1.2e-11 74.7 279 28.3
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.2e-11 74.7 278 27.7
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 1.6e-11 74.3 261 32.6
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 1.6e-11 74.3 199 34.7
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.8e-11 73.6 263 29.3
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.8e-11 73.6 223 34.1
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.6e-11 73.2 298 28.9
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 8.0e-11 72.0 92 47.8
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 1.8e-10 70.9 61 65.6
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.0e-10 70.1 280 30.7
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 4.0e-10 69.7 278 29.5
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 6.8e-10 68.9 271 29.5
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 6.8e-10 68.9 271 29.5
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 6.8e-10 68.9 272 29.4
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 8.9e-10 68.6 266 30.5
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 8.9e-10 68.6 179 34.6
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.2e-09 68.2 117 40.2
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.5e-09 67.8 278 28.8
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 2.0e-09 67.4 158 36.1
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 2.6e-09 67.0 159 34.0
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 3.4e-09 66.6 261 29.9
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.4e-09 66.2 263 28.1
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 4.4e-09 66.2 257 26.8
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 4.4e-09 66.2 270 29.6
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 5.7e-09 65.9 261 28.4
Sopen06g004460 Solanum pennellii HOM05D003500 ORTHO05D003919 5.7e-09 65.9 61 60.7
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 7.5e-09 65.5 257 31.1
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 9.8e-09 65.1 261 29.9
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 9.8e-09 65.1 248 26.6
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 9.8e-09 65.1 308 27.9
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.8e-09 65.1 186 33.9
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.7e-08 64.3 275 28.7
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.7e-08 64.3 261 29.5
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.7e-08 64.3 293 28.0
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.7e-08 64.3 283 28.3
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 1.7e-08 64.3 268 27.6
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 3.7e-08 63.2 111 40.5
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 3.7e-08 63.2 286 25.2
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 4.9e-08 62.8 286 25.9
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.4e-08 62.4 282 29.8
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.4e-08 62.4 304 29.3
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 1.1e-07 61.6 255 29.8
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.4e-07 61.2 271 29.2
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 7.0e-07 58.9 270 28.1
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.0e-07 58.9 261 27.2
Nn2g11771 Nelumbo nucifera HOM05D003500 ORTHO05D003919 7.0e-07 58.9 179 31.8
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 9.2e-07 58.5 261 28.0
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.6e-06 57.8 267 26.2
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 1.6e-06 57.8 105 36.2
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 2.0e-06 57.4 126 36.5
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 2.7e-06 57.0 264 27.3
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 3.5e-06 56.6 276 29.7
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.9e-06 55.8 176 30.1


User provided reference genes

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