Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 4.2e-68 261.2 126 100.0
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 7.3e-20 100.9 56 87.5
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 9.3e-15 84.0 53 73.6
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.2e-14 83.6 53 77.4
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 1.2e-14 83.6 52 76.9
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 6.0e-14 81.3 52 73.1
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 7.9e-14 80.9 51 82.4
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 7.9e-14 80.9 52 73.1
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 2.3e-13 79.3 50 74.0
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 8.7e-13 77.4 52 69.2
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 8.7e-13 77.4 52 67.3
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.1e-12 77.0 50 72.0
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 1.1e-12 77.0 52 65.4
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 1.1e-12 77.0 52 65.4
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.9e-12 76.3 54 66.7
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 3.3e-12 75.5 52 63.5
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 4.3e-12 75.1 50 72.0
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 5.6e-12 74.7 48 75.0
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 7.4e-12 74.3 52 61.5
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 7.4e-12 74.3 53 60.4
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 1.3e-11 73.6 50 72.0
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.3e-11 73.6 54 59.3
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 2.1e-11 72.8 54 59.3
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 4.8e-11 71.6 54 59.3
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 4.8e-11 71.6 52 63.5
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 6.2e-11 71.2 54 55.6
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 8.1e-11 70.9 54 61.1
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 8.1e-11 70.9 52 59.6
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 1.1e-10 70.5 49 67.3
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 1.1e-10 70.5 53 60.4
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 1.1e-10 70.5 59 55.9
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 1.1e-10 70.5 51 64.7
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 1.8e-10 69.7 51 64.7
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 1.8e-10 69.7 51 64.7
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 1.8e-10 69.7 51 64.7
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.8e-10 69.7 50 64.0
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 2.4e-10 69.3 52 63.5
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 2.4e-10 69.3 51 64.7
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 4.0e-10 68.6 50 64.0
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 4.0e-10 68.6 50 62.0
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 5.3e-10 68.2 49 67.3
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 5.3e-10 68.2 50 62.0
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 6.9e-10 67.8 53 58.5
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 6.9e-10 67.8 51 60.8
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 6.9e-10 67.8 46 71.7
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 6.9e-10 67.8 46 71.7
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 6.9e-10 67.8 54 53.7
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 6.9e-10 67.8 51 56.9
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 9.0e-10 67.4 51 62.7
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 1.2e-09 67.0 50 64.0
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 1.5e-09 66.6 49 59.2
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 1.5e-09 66.6 51 60.8
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 2.0e-09 66.2 50 62.0
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 2.0e-09 66.2 50 62.0
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 2.0e-09 66.2 52 57.7
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 2.6e-09 65.9 48 68.8
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 3.4e-09 65.5 49 65.3
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 4.5e-09 65.1 47 66.0
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.5e-09 65.1 48 66.7
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 4.5e-09 65.1 50 60.0
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 5.8e-09 64.7 52 61.5
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 7.6e-09 64.3 48 64.6
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 9.9e-09 63.9 47 66.0
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.3e-08 63.5 47 66.0
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 1.3e-08 63.5 47 66.0
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 1.3e-08 63.5 49 59.2
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 1.3e-08 63.5 47 63.8
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 2.2e-08 62.8 49 61.2
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 2.2e-08 62.8 49 61.2
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 2.2e-08 62.8 48 64.6
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 2.9e-08 62.4 49 59.2
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 2.9e-08 62.4 49 59.2
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 3.8e-08 62.0 50 60.0
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 3.8e-08 62.0 47 55.3
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 6.4e-08 61.2 49 53.1
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 6.4e-08 61.2 49 57.1
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 6.4e-08 61.2 52 53.8
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 8.4e-08 60.8 52 51.9
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 8.4e-08 60.8 47 61.7
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 8.4e-08 60.8 49 59.2
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 1.1e-07 60.5 49 59.2
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.4e-07 60.1 49 53.1
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 1.9e-07 59.7 53 49.1
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 3.2e-07 58.9 55 56.4
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 5.5e-07 58.2 47 53.2
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 9.3e-07 57.4 46 54.3
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 2.1e-06 56.2 52 57.7


User provided reference genes

Program Settings