Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 7.1e-133 477.2 236 100.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.2e-85 318.9 170 91.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 2.9e-78 295.8 170 84.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-76 290.4 170 81.2
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.8e-75 284.3 167 80.8
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.5e-74 283.5 201 72.1
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 4.8e-73 278.5 167 79.6
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.1e-72 274.2 160 81.2
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 4.5e-71 271.9 170 77.1
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 4.5e-71 271.9 168 75.6
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-69 266.2 159 79.9
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 5.5e-69 265.0 170 72.9
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 9.4e-69 264.2 167 74.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.2e-68 263.8 162 79.0
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.6e-68 263.5 162 78.4
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.7e-68 261.9 162 78.4
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.7e-68 261.9 170 71.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.0e-67 260.8 170 70.0
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.4e-67 260.4 170 71.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.8e-67 260.0 170 73.5
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 2.6e-66 256.1 170 71.2
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 3.3e-66 255.8 171 70.8
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 5.7e-66 255.0 167 70.1
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.3e-65 253.8 170 71.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-65 253.4 169 72.2
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.7e-65 253.4 163 74.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 4.8e-65 251.9 170 69.4
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.1e-64 250.8 180 62.8
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 4.1e-64 248.8 187 62.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 9.1e-64 247.7 165 70.9
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 1.5e-63 246.9 167 68.3
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.6e-63 246.1 196 60.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.5e-63 245.7 167 69.5
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.5e-63 245.7 181 63.5
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 4.5e-63 245.4 167 68.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 4.5e-63 245.4 169 67.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 7.7e-63 244.6 183 62.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 1.0e-62 244.2 165 67.9
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.0e-62 244.2 163 70.6
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 1.3e-62 243.8 180 65.6
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.7e-62 243.4 165 66.1
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.7e-62 243.4 178 66.3
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.7e-62 243.4 178 66.3
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.7e-62 243.4 164 67.7
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.2e-62 243.0 165 67.3
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.2e-62 243.0 170 64.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 2.9e-62 242.7 169 68.0
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.9e-62 242.7 169 66.9
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 2.9e-62 242.7 169 66.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 3.8e-62 242.3 170 68.8
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.0e-62 241.9 165 67.9
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.1e-61 240.7 164 68.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 1.1e-61 240.7 167 68.3
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 1.1e-61 240.7 167 68.3
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.1e-61 240.7 163 69.3
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 1.9e-61 240.0 165 66.1
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.9e-61 240.0 167 63.5
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 2.5e-61 239.6 165 65.5
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 2.5e-61 239.6 167 67.1
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.5e-61 239.6 167 65.3
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.2e-61 239.2 167 67.7
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 3.2e-61 239.2 167 67.7
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 3.2e-61 239.2 170 66.5
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 3.2e-61 239.2 163 69.3
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 4.2e-61 238.8 169 65.7
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.2e-61 238.8 167 65.3
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.2e-61 238.8 165 66.7
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 5.5e-61 238.4 198 62.1
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.2e-61 238.0 164 65.2
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 7.2e-61 238.0 164 65.2
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 7.2e-61 238.0 169 62.1
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 9.4e-61 237.7 180 61.1
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.2e-60 237.3 180 63.3
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.2e-60 237.3 167 64.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.2e-60 237.3 167 64.7
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.2e-60 237.3 198 61.1
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 1.6e-60 236.9 169 66.3
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.6e-60 236.9 167 64.7
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 4.7e-60 235.3 167 65.9
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 4.7e-60 235.3 169 66.3
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 4.7e-60 235.3 165 65.5
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 6.1e-60 235.0 169 65.7
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 6.1e-60 235.0 169 65.7
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 6.1e-60 235.0 170 65.3
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 8.0e-60 234.6 177 60.5
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.0e-59 234.2 167 66.5
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.0e-59 234.2 180 62.8
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 1.0e-59 234.2 180 62.8
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.8e-59 233.4 158 69.0
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.0e-59 232.6 160 67.5
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 3.0e-59 232.6 165 64.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 4.0e-59 232.3 160 66.9
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 5.2e-59 231.9 209 56.5
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.8e-59 231.1 164 65.9
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.1e-58 230.7 167 61.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 1.5e-58 230.3 170 62.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.0e-58 229.9 129 84.5
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.0e-58 229.9 195 55.9
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.4e-58 228.8 167 62.3
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 4.4e-58 228.8 167 67.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.7e-58 227.6 156 74.4
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 9.7e-58 227.6 169 64.5
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 9.7e-58 227.6 164 63.4
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.2e-57 226.5 166 62.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.8e-57 226.1 168 64.3
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.7e-57 225.7 165 63.0
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 8.2e-57 224.6 167 62.9
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.1e-56 224.2 158 67.1
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.4e-56 223.8 166 63.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.8e-56 223.4 165 63.6
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.8e-56 223.4 165 63.6
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 4.1e-56 222.2 160 63.1
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.0e-56 221.5 128 82.0
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 7.0e-56 221.5 165 63.6
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 9.1e-56 221.1 144 70.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-55 220.7 168 60.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.6e-55 220.3 169 65.1
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 2.6e-55 219.5 163 61.3
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 3.5e-55 219.2 158 65.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 3.5e-55 219.2 163 62.0
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.9e-55 218.4 167 59.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.7e-55 218.0 133 76.7
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 2.2e-54 216.5 167 61.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 2.2e-54 216.5 158 65.2
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.2e-54 216.5 169 59.8
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 5.0e-54 215.3 172 57.6
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.1e-53 214.2 165 60.0
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 2.5e-53 213.0 163 58.9
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.2e-53 212.2 163 59.5
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.2e-53 211.5 154 63.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 1.2e-52 210.7 163 59.5
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 1.6e-52 210.3 154 63.0
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.1e-52 209.9 154 63.0
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 1.8e-51 206.8 170 60.6
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.8e-51 206.8 148 65.5
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 1.7e-49 200.3 167 55.1
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 1.6e-47 193.7 158 57.0
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.2e-46 189.9 169 53.8
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.2e-46 189.9 168 53.0
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.7e-44 183.0 122 74.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.4e-43 180.6 163 53.4
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 3.1e-40 169.5 144 59.0
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 1.0e-35 154.5 110 61.8
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 3.2e-32 142.9 94 67.0
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 1.7e-30 137.1 156 45.5
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 3.0e-30 136.3 171 40.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.6e-28 130.6 74 79.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 3.5e-23 112.8 155 34.8
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 6.0e-23 112.1 161 36.6
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 4.3e-21 105.9 152 38.2
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.8e-20 103.2 144 36.8
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 8.9e-19 98.2 86 55.8
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-15 87.8 87 44.8
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.3e-14 83.6 55 69.1
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.4e-10 69.7 130 33.1
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 2.7e-07 60.1 54 50.0
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 3.5e-07 59.7 53 50.9
BraA05t20833Z Brassica rapa HOM05D004405 ORTHO05D033353 1.0e-06 58.2 62 48.4


User provided reference genes

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