Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05291 Vaccinium macrocarpon HOM05D003847 ORTHO05D026554 1.0e-48 197.2 106 100.0
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 1.5e-12 77.0 49 77.6
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 2.0e-12 76.6 47 78.7
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 4.4e-12 75.5 48 77.1
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 4.4e-12 75.5 47 78.7
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 5.8e-12 75.1 47 78.7
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 5.8e-12 75.1 47 78.7
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 5.8e-12 75.1 47 78.7
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 7.5e-12 74.7 48 75.0
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 9.9e-12 74.3 47 78.7
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 9.9e-12 74.3 47 78.7
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 1.3e-11 73.9 47 78.7
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 1.7e-11 73.6 47 74.5
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 1.7e-11 73.6 48 77.1
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 2.2e-11 73.2 47 76.6
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 2.2e-11 73.2 48 75.0
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 2.2e-11 73.2 47 78.7
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 2.9e-11 72.8 48 75.0
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 2.9e-11 72.8 48 75.0
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.9e-11 72.8 49 73.5
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.7e-11 72.4 47 76.6
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 3.7e-11 72.4 47 76.6
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.7e-11 72.4 48 75.0
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 3.7e-11 72.4 48 75.0
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 3.7e-11 72.4 47 74.5
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 4.9e-11 72.0 47 74.5
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 4.9e-11 72.0 47 76.6
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 4.9e-11 72.0 47 74.5
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 6.4e-11 71.6 47 70.2
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 6.4e-11 71.6 47 76.6
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 6.4e-11 71.6 47 76.6
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 6.4e-11 71.6 47 72.3
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 6.4e-11 71.6 47 76.6
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 6.4e-11 71.6 47 68.1
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 8.3e-11 71.2 47 74.5
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 8.3e-11 71.2 47 72.3
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 8.3e-11 71.2 47 74.5
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 8.3e-11 71.2 47 74.5
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 1.1e-10 70.9 47 72.3
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 1.4e-10 70.5 47 72.3
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.4e-10 70.5 47 74.5
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 1.4e-10 70.5 47 74.5
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 1.4e-10 70.5 47 74.5
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 1.4e-10 70.5 47 74.5
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 1.4e-10 70.5 47 72.3
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.9e-10 70.1 47 74.5
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 1.9e-10 70.1 47 74.5
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 1.9e-10 70.1 47 68.1
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 2.4e-10 69.7 47 72.3
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 2.4e-10 69.7 47 74.5
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 2.4e-10 69.7 47 72.3
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 2.4e-10 69.7 47 72.3
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 2.4e-10 69.7 47 74.5
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 2.4e-10 69.7 47 72.3
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 3.2e-10 69.3 47 72.3
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 3.2e-10 69.3 47 72.3
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 3.2e-10 69.3 47 72.3
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 3.2e-10 69.3 47 72.3
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 4.1e-10 68.9 47 72.3
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 4.1e-10 68.9 47 72.3
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 4.1e-10 68.9 47 72.3
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 4.1e-10 68.9 47 70.2
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 4.1e-10 68.9 47 72.3
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.1e-10 68.9 47 74.5
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 74.5
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 72.3
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 70.2
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 72.3
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 5.4e-10 68.6 47 72.3
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 7.1e-10 68.2 47 68.1
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 7.1e-10 68.2 47 74.5
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 7.1e-10 68.2 47 70.2
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 9.2e-10 67.8 47 66.0
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 9.2e-10 67.8 47 70.2
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 9.2e-10 67.8 47 70.2
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 9.2e-10 67.8 47 70.2
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 9.2e-10 67.8 47 72.3
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.2e-09 67.4 47 72.3
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.2e-09 67.4 47 70.2
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 1.2e-09 67.4 47 63.8
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 1.2e-09 67.4 47 70.2
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 1.6e-09 67.0 47 70.2
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 66.0
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 66.0
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 72.3
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.1e-09 66.6 47 70.2
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 2.7e-09 66.2 47 70.2
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 2.7e-09 66.2 47 74.5
TAR365G1016 Trochodendron aralioides HOM05D000001 ORTHO05D000003 2.7e-09 66.2 48 66.7
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 2.7e-09 66.2 47 68.1
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 3.5e-09 65.9 51 66.7
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 4.6e-09 65.5 47 66.0
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 4.6e-09 65.5 47 66.0
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 6.0e-09 65.1 47 70.2
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 6.0e-09 65.1 47 70.2
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 6.0e-09 65.1 47 63.8
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 6.0e-09 65.1 48 64.6
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 68.1
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 66.0
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 66.0
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 66.0
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 66.0
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 66.0
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 61.7
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 68.1
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 7.8e-09 64.7 47 66.0
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.0e-08 64.3 47 66.0
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 1.3e-08 63.9 47 57.4
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 1.3e-08 63.9 47 63.8
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 1.3e-08 63.9 47 66.0
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 1.7e-08 63.5 47 66.0
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 2.3e-08 63.2 48 62.5
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 2.3e-08 63.2 47 61.7
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 5.1e-08 62.0 47 59.6
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 6.6e-08 61.6 47 59.6
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.6e-08 61.2 58 51.7
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 8.6e-08 61.2 47 66.0
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 1.1e-07 60.8 47 59.6
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-07 60.8 47 59.6
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-06 57.0 47 55.3
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.6e-06 57.0 47 55.3
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 2.8e-06 56.2 47 55.3
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.8e-06 56.2 47 55.3
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 3.6e-06 55.8 47 53.2
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 3.6e-06 55.8 47 53.2
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 8.1e-06 54.7 47 55.3


User provided reference genes

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