Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.2e-214 749.6 383 100.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 8.3e-91 338.2 368 59.0
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.9e-63 247.3 370 45.9
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 3.2e-58 229.9 370 44.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.3e-56 223.8 370 44.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.3e-48 198.0 237 48.9
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.9e-48 196.4 374 39.6
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 3.9e-48 196.4 366 38.3
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 3.9e-48 196.4 370 39.5
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-47 194.9 367 39.5
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.5e-47 194.5 372 36.8
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 1.9e-47 194.1 367 38.7
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-47 194.1 370 38.9
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 5.6e-47 192.6 373 41.3
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.3e-46 191.4 370 38.6
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 3.6e-46 189.9 368 40.8
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.8e-45 187.6 376 38.6
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 6.9e-45 185.7 372 37.6
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 9.0e-45 185.3 366 38.8
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.0e-44 184.1 370 36.8
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.4e-44 183.3 369 39.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 4.5e-44 183.0 369 38.2
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 7.6e-44 182.2 364 39.3
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 9.9e-44 181.8 368 40.8
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 9.9e-44 181.8 369 39.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 4.9e-43 179.5 371 36.9
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.4e-43 178.7 371 36.9
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 1.1e-42 178.3 364 38.2
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.4e-42 177.9 368 38.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 4.2e-42 176.4 366 35.8
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 7.1e-42 175.6 372 36.8
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 9.3e-42 175.3 372 37.1
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 9.3e-42 175.3 367 39.0
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.6e-41 174.5 372 37.1
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.1e-41 174.1 299 41.1
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.7e-41 173.7 368 39.9
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 3.5e-41 173.3 371 39.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.5e-41 173.3 368 38.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 3.5e-41 173.3 371 38.8
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.6e-41 172.9 371 38.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 1.0e-40 171.8 370 37.6
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.0e-40 171.8 371 39.1
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 1.3e-40 171.4 384 35.7
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.3e-40 171.4 373 37.8
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.3e-40 170.6 367 38.7
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 5.1e-40 169.5 222 45.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 5.1e-40 169.5 375 36.0
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 8.7e-40 168.7 370 37.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-39 168.3 367 37.9
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.1e-39 168.3 367 37.9
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 4.3e-39 166.4 374 35.6
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 5.6e-39 166.0 369 37.1
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.3e-38 164.9 385 38.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.8e-38 162.9 368 35.9
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.2e-38 162.5 373 38.1
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 8.1e-38 162.2 368 36.7
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.1e-37 161.8 368 38.3
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.4e-37 160.6 367 35.4
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.4e-37 160.6 366 38.8
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 9.0e-37 158.7 372 34.4
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 1.2e-36 158.3 371 34.5
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 3.4e-36 156.8 234 41.0
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 3.4e-36 156.8 367 37.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.4e-36 156.8 407 36.1
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 5.8e-36 156.0 372 35.5
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.7e-35 154.5 376 31.9
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 2.2e-35 154.1 351 38.5
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 2.9e-35 153.7 371 34.5
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 6.5e-35 152.5 371 31.3
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 8.4e-35 152.1 371 36.1
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.4e-34 151.4 357 33.9
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.9e-34 151.0 239 38.1
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.2e-34 149.8 370 33.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.5e-34 149.4 375 34.7
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 5.5e-34 149.4 373 33.5
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 9.3e-34 148.7 238 37.4
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.2e-33 148.3 238 37.8
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.2e-33 148.3 375 34.1
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.2e-33 148.3 238 40.8
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.2e-33 148.3 226 38.9
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-33 147.9 377 36.1
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.7e-33 147.1 373 34.3
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 3.5e-33 146.7 377 36.1
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 7.9e-33 145.6 248 38.3
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.0e-32 145.2 239 37.7
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.3e-32 144.1 374 34.8
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 3.0e-32 143.7 239 38.1
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 5.1e-32 142.9 282 39.4
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 6.7e-32 142.5 374 34.5
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 8.7e-32 142.1 365 34.0
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-31 141.7 301 38.5
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.9e-31 141.0 373 35.4
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 3.3e-31 140.2 370 35.1
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.3e-31 140.2 375 32.0
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 3.3e-31 140.2 376 32.4
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 3.3e-31 140.2 370 35.1
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 4.3e-31 139.8 235 37.0
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 9.6e-31 138.7 374 32.6
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.8e-30 137.1 370 33.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 3.7e-30 136.7 362 32.9
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 8.2e-30 135.6 311 34.7
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 8.2e-30 135.6 369 34.7
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 1.4e-29 134.8 375 30.9
Rhsim01G0128100 Rhododendron simsii HOM05D033462 ORTHO05D011520 1.4e-29 134.8 176 48.3
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.8e-29 134.4 365 31.2
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.4e-29 134.0 137 51.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 3.1e-29 133.7 372 32.3
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 4.1e-29 133.3 364 33.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-29 133.3 363 33.1
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.5e-28 131.3 360 33.3
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.4e-28 130.2 227 37.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 5.9e-28 129.4 363 34.4
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 7.6e-28 129.0 363 33.1
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.0e-27 128.6 245 36.7
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.7e-27 127.9 361 33.5
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.7e-27 127.9 374 30.5
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.9e-27 127.1 363 32.8
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 3.8e-27 126.7 233 39.1
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.1e-26 125.2 229 37.1
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 5.5e-26 122.9 366 30.3
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 9.3e-26 122.1 235 36.2
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.7e-25 120.6 227 35.2
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 6.1e-25 119.4 231 34.6
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.9e-25 119.0 172 54.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 7.9e-25 119.0 367 33.2
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.0e-24 118.6 359 33.1
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.3e-24 118.2 137 47.4
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.3e-24 117.5 370 31.9
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.1e-23 115.2 360 30.0
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 7.4e-23 112.5 142 44.4
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.3e-22 111.7 135 47.4
Rhsim03G0111100 Rhododendron simsii HOM05D003586 ORTHO05D004036 4.8e-22 109.8 79 77.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 6.3e-22 109.4 235 33.2
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.0e-19 99.8 65 70.8
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 3.2e-18 97.1 150 39.3
Rhsim01G0127300 Rhododendron simsii HOM05D033462 ORTHO05D005376 2.0e-15 87.8 66 71.2
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 7.4e-15 85.9 167 38.3
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 3.1e-13 80.5 271 26.2
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.9e-11 73.9 168 41.1
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 8.5e-11 72.4 48 62.5
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.1e-10 72.0 74 54.1
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.4e-10 71.6 168 33.9
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 6.1e-09 66.2 170 30.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 5.2e-08 63.2 74 45.9
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 5.2e-08 63.2 36 72.2
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 5.7e-07 59.7 173 28.9
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.3e-06 58.5 179 27.4
Rhsim11G0046800 Rhododendron simsii HOM05D033462 ORTHO05D005376 8.2e-06 55.8 49 67.3


User provided reference genes

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