Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 2791.1 1432 100.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1820.4 1293 76.1
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1640.2 1291 68.9
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1614.0 1291 67.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1598.6 1265 68.7
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1535.4 1294 63.8
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1292 64.2
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1515.7 1291 64.3
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1491.5 1293 62.6
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1484.9 1292 62.5
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1482.2 1292 62.2
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1481.5 1293 62.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1476.5 1292 62.2
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1470.3 1292 61.7
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1467.6 1292 61.6
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1462.2 1291 61.3
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1462.2 1293 62.0
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1458.0 1291 60.5
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1453.0 1291 61.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1452.6 1293 61.2
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1448.3 1293 61.9
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1448.0 1291 61.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1448.0 1296 61.3
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1446.4 1292 61.4
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1442.6 1292 60.5
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1431.8 1292 61.2
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1431.8 1292 60.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1427.5 1293 61.3
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1423.3 1291 59.3
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1423.3 1293 59.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1420.2 1293 59.8
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1419.4 1290 59.2
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1419.4 1293 59.8
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1414.4 1293 59.5
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1413.3 1293 59.5
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1410.2 1297 60.5
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1409.4 1257 61.0
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1406.7 1303 59.2
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1406.7 1293 59.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1406.3 1293 59.2
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1405.2 1292 60.1
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1397.9 1266 60.0
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1396.7 1292 58.1
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1395.6 1293 58.5
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1392.5 1294 58.8
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1385.9 1323 57.7
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1385.5 1306 58.3
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1385.2 1293 58.8
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1385.2 1291 58.5
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1384.4 1298 58.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1384.0 1294 59.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1381.7 1293 58.6
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1365.1 1291 56.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1361.7 1286 57.8
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1357.4 1292 58.7
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1350.1 1291 56.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1346.3 1249 58.7
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1343.6 1285 57.1
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1340.9 1291 56.6
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1339.7 1295 57.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1339.3 1382 55.1
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1336.2 1302 56.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1335.9 1291 56.5
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1329.7 1288 56.8
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1326.2 1299 57.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1325.1 1280 56.9
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1321.6 1286 56.5
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1319.3 1291 56.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1317.4 1291 58.1
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1316.2 1291 55.8
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1315.8 1281 56.2
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1315.4 1290 56.3
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1312.0 1292 55.9
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1309.7 1292 55.9
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1309.3 1282 56.6
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1308.9 1293 56.0
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1307.7 1299 55.8
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1305.4 1281 56.3
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1295.8 1281 55.8
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1295.0 1293 56.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1290.8 1281 55.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1281.5 1290 55.5
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1280.8 1279 55.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1279.6 1283 56.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1270.0 1277 54.7
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1256.9 1278 55.2
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1253.4 1309 53.4
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1249.2 1205 56.8
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1249.2 1270 54.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1229.5 1110 61.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1219.9 1291 53.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1218.0 1257 54.1
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1190.6 1299 52.2
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1161.4 1305 51.3
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1160.6 1242 52.9
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1155.2 1312 50.9
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1149.8 1307 50.0
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1143.3 1264 51.6
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1130.5 1106 55.7
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1109.0 1288 50.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1079.3 1158 53.5
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.8e-287 993.4 1212 48.3
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 9.2e-268 927.9 1038 52.2
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.6e-264 916.0 835 60.2
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-257 894.4 893 57.1
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 8.9e-255 884.8 965 51.8
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 7.1e-220 768.8 1317 38.6
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.4e-212 744.6 662 62.8
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.2e-211 741.5 1325 36.2
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 9.6e-209 731.9 1318 36.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 5.3e-199 699.5 1081 41.6
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 6.7e-194 682.6 1261 37.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.8e-189 666.8 1258 36.7
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 5.0e-189 666.4 1288 34.2
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 3.2e-188 663.7 753 52.1
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.6e-187 661.4 1237 37.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-186 657.9 1258 36.4
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-163 582.0 713 46.3
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 3.4e-161 573.9 577 56.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.0e-157 562.4 411 69.3
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 3.8e-157 560.5 1307 32.0
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.9e-156 558.1 763 45.2
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.9e-154 549.3 580 54.5
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.4e-143 514.6 486 58.2
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.2e-131 473.4 322 77.0
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.4e-127 461.5 596 44.6
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.7e-117 428.7 298 75.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.0e-80 306.6 210 75.2
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 7.2e-71 273.9 267 53.6
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 9.4e-71 273.5 186 78.5
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.2e-52 213.4 1455 21.7
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 4.0e-45 188.3 109 86.2
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.5e-39 169.1 338 32.5
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.2e-36 160.2 319 33.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.8e-29 136.3 217 41.9
vmacro14705 Vaccinium macrocarpon HOM05D011229 ORTHO05D013540 6.8e-29 134.4 221 40.7
CSS0028285 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 3.4e-28 132.1 125 55.2
CSS0020132 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 7.5e-28 131.0 125 54.4
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 7.5e-28 131.0 96 70.8
CSS0041865 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 9.8e-28 130.6 124 55.6
CSS0011271 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 2.9e-27 129.0 125 54.4
CSS0039329 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 3.5e-25 122.1 146 45.9
CSS0027850 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 7.8e-25 120.9 124 51.6
vmacro14522 Vaccinium macrocarpon HOM05D011229 ORTHO05D013540 1.9e-23 116.3 275 33.1
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.7e-19 102.1 222 36.0
vmacro17519 Vaccinium macrocarpon HOM05D011229 ORTHO05D013540 6.4e-19 101.3 81 59.3
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.2e-17 97.1 322 28.0
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.6e-17 96.7 87 58.6
vmacro14229 Vaccinium macrocarpon HOM05D000201 ORTHO05D000490 4.6e-17 95.1 58 70.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 1.5e-15 90.1 80 56.2
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 3.3e-15 89.0 63 71.4
CSS0007385 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 3.3e-15 89.0 58 69.0
CSS0019946 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 3.3e-15 89.0 58 69.0
CSS0026084 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 3.3e-15 89.0 58 70.7
CSS0047064 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 3.3e-15 89.0 58 69.0
CSS0028711 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 7.3e-15 87.8 54 74.1
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 2.1e-14 86.3 73 60.3
CSS0016787 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 2.8e-14 85.9 58 67.2
CSS0033008 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 8.1e-14 84.3 58 65.5
CSS0018367 Camellia sinensis var. sinensis HOM05D011229 ORTHO05D013540 1.1e-13 84.0 58 67.2
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 6.8e-13 81.3 78 57.7
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 8.9e-13 80.9 73 52.1
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 5.8e-12 78.2 69 56.5
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-11 76.6 64 60.9
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 4.9e-11 75.1 87 49.4
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 8.4e-11 74.3 91 50.5
vmacro16264 Vaccinium macrocarpon HOM05D000154 ORTHO05D000092 1.3e-08 67.0 48 70.8
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 4.3e-07 62.0 41 70.7
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.2e-06 60.5 318 23.0
CSS0036266 Camellia sinensis var. sinensis HOM05D001225 ORTHO05D001252 1.6e-06 60.1 59 54.2
CSS0042035 Camellia sinensis var. sinensis HOM05D013222 ORTHO05D013042 3.6e-06 58.9 50 58.0
CSS0020961 Camellia sinensis var. sinensis HOM05D013222 ORTHO05D013042 6.2e-06 58.2 50 58.0
CSS0037350 Camellia sinensis var. sinensis HOM05D013222 ORTHO05D013042 6.2e-06 58.2 50 58.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 8.1e-06 57.8 134 29.9
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 8.1e-06 57.8 48 60.4


User provided reference genes

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