Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05230 Vaccinium macrocarpon HOM05D000240 ORTHO05D015017 9.4e-145 516.9 276 100.0
Rhsim08G0184500 Rhododendron simsii HOM05D000240 ORTHO05D002608 9.6e-81 304.3 335 60.0
Actinidia09265 Actinidia chinensis HOM05D000240 ORTHO05D002608 9.9e-70 267.7 293 57.3
Cfa020015 Carpinus fangiana HOM05D000240 ORTHO05D002608 1.5e-46 190.7 294 44.9
Haze_16236 Corylus avellana HOM05D000240 ORTHO05D002608 7.7e-46 188.3 322 43.8
TWI77G1020 Tripterygium wilfordii HOM05D000240 ORTHO05D002608 1.2e-43 181.0 290 42.4
Dinv09475 Davidia involucrata HOM05D000240 ORTHO05D015017 1.4e-42 177.6 233 50.6
CiPaw.09G046800 Carya illinoinensis HOM05D000240 ORTHO05D002608 9.7e-41 171.4 290 43.1
Atru.chr12.1237 Acer truncatum HOM05D000240 ORTHO05D002608 1.7e-40 170.6 292 42.5
Ciclev10005818m.g Citrus clementina HOM05D000240 ORTHO05D015017 3.1e-39 166.4 224 50.4
TAR633G0479 Trochodendron aralioides HOM05D000240 ORTHO05D002608 1.0e-37 161.4 290 39.0
Duzib106G0433 Durio zibethinus HOM05D000240 ORTHO05D002608 1.3e-37 161.0 278 41.7
QL07p009810 Quercus lobata HOM05D000240 ORTHO05D002608 2.9e-37 159.8 292 41.1
Thecc.05G137000 Theobroma cacao HOM05D000240 ORTHO05D002608 2.9e-37 159.8 286 41.6
Potri.006G040700 Populus trichocarpa HOM05D000240 ORTHO05D002608 5.5e-36 155.6 284 40.1
Hund19103 Selenicereus undatus HOM05D000240 ORTHO05D002608 6.1e-35 152.1 293 37.5
HanXRQChr13g0414111 Helianthus annuus HOM05D000240 ORTHO05D002608 5.1e-34 149.1 292 38.4
EL10Ac3g07197 Beta vulgaris HOM05D000240 ORTHO05D002608 4.4e-33 146.0 291 39.2
GSVIVG01033614001 Vitis vinifera HOM05D000240 ORTHO05D002608 2.8e-32 143.3 277 40.4
Lj5g0004487 Lotus japonicus HOM05D000240 ORTHO05D002608 6.3e-32 142.1 289 40.1
Sed0010747 Sechium edule HOM05D000240 ORTHO05D002608 1.4e-31 141.0 215 44.7
Sabra06G0027600 Salix brachista HOM05D000240 ORTHO05D002608 3.1e-31 139.8 285 39.3
Sc13g0001240 Simmondsia chinensis HOM05D000240 ORTHO05D002608 3.1e-31 139.8 278 38.8
CSS0035154 Camellia sinensis var. sinensis HOM05D000240 ORTHO05D015017 1.7e-29 134.0 124 65.3
AUR62030350 Chenopodium quinoa HOM05D000240 ORTHO05D002608 2.9e-29 133.3 228 41.7
Nitab4.5_0002208g0050 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.5e-28 130.2 274 37.6
CAN.G1280.50 Capsicum annuum HOM05D000127 ORTHO05D002608 3.2e-28 129.8 274 38.0
AUR62040836 Chenopodium quinoa HOM05D000240 ORTHO05D002608 4.2e-28 129.4 230 40.9
Glyma.17G208400 Glycine max HOM05D000240 ORTHO05D002608 4.2e-28 129.4 288 39.2
AT3G10180 Arabidopsis thaliana HOM05D000240 ORTHO05D002608 9.4e-28 128.3 273 36.6
Nitab4.5_0002162g0030 Nicotiana tabacum HOM05D000240 ORTHO05D002608 2.1e-27 127.1 274 37.2
Lalb_Chr21g0316681 Lupinus albus HOM05D000240 ORTHO05D002608 4.7e-27 125.9 283 36.0
MELO3C009763.2 Cucumis melo HOM05D000240 ORTHO05D002608 6.1e-27 125.6 280 35.4
MBI14_g34249_MAGBIO Magnolia biondii HOM05D000240 ORTHO05D002608 8.0e-27 125.2 273 34.4
Cc00_g02410 Coffea canephora HOM05D000240 ORTHO05D002608 1.4e-26 124.4 208 42.3
Sopen04g016330 Solanum pennellii HOM05D000240 ORTHO05D002608 2.3e-26 123.6 271 38.0
Solyc04g040110.3 Solanum lycopersicum HOM05D000240 ORTHO05D002608 1.1e-25 121.3 271 37.6
ClCG10G016160 Citrullus lanatus HOM05D000240 ORTHO05D002608 5.7e-25 119.0 280 35.4
CsaV3_3G040260 Cucumis sativus L. HOM05D000240 ORTHO05D002608 1.3e-24 117.9 281 35.2
Medtr1g484960 Medicago truncatula HOM05D000240 ORTHO05D002608 2.2e-24 117.1 215 40.5
FAN03G2757 Fragaria x ananassa HOM05D000240 ORTHO05D002608 2.8e-24 116.7 175 46.9
MD14G1085100 Malus domestica HOM05D000240 ORTHO05D002608 4.8e-24 115.9 281 37.7
Phvul.001G052600 Phaseolus vulgaris HOM05D000240 ORTHO05D002608 4.8e-24 115.9 283 35.7
THA.LOC104816404 Tarenaya hassleriana HOM05D000240 ORTHO05D002608 4.8e-24 115.9 270 36.7
Prupe.7G041000 Prunus persica HOM05D000240 ORTHO05D002608 6.3e-24 115.5 295 36.6
Ah.04g151070 Amaranthus hybridus HOM05D000240 ORTHO05D002608 8.2e-24 115.2 217 38.2
Cpa.g.sc1212.3 Carica papaya HOM05D000240 ORTHO05D002608 8.2e-24 115.2 271 36.2
Sp3g08460 Schrenkiella parvula HOM05D000240 ORTHO05D002608 8.2e-24 115.2 271 37.6
CANSAT64G1418 Cannabis sativa HOM05D000240 ORTHO05D002608 1.1e-23 114.8 207 38.6
FAN06G4340 Fragaria x ananassa HOM05D000240 ORTHO05D002608 5.3e-23 112.5 175 45.1
Peaxi162Scf01010g00017 Petunia axillaris HOM05D000240 ORTHO05D002608 5.3e-23 112.5 272 34.9
FvH4_7g02901 Fragaria vesca HOM05D000240 ORTHO05D002608 1.6e-22 110.9 175 45.1
Carub.0003s0933 Capsella rubella HOM05D000240 ORTHO05D002608 4.5e-22 109.4 273 35.2
COL.COLO4_08473 Corchorus olitorius HOM05D000240 ORTHO05D002608 4.5e-22 109.4 210 38.1
AL3G21510 Arabidopsis lyrata HOM05D000240 ORTHO05D002608 1.7e-21 107.5 204 40.7
RcHm_v2.0_Chr1g0323861 Rosa chinensis HOM05D000240 ORTHO05D002608 2.2e-21 107.1 279 35.8
Nn7g36671 Nelumbo nucifera HOM05D000240 ORTHO05D002608 6.5e-21 105.5 217 40.6
ATR0580G186 Amborella trichopoda HOM05D000240 ORTHO05D002608 3.2e-20 103.2 293 33.1
Thhalv10019913m.g Eutrema salsugineum HOM05D000240 ORTHO05D002608 3.2e-20 103.2 273 34.4
Lsat_1_v5_gn_6_79340 Lactuca sativa HOM05D000240 ORTHO05D002608 3.2e-20 103.2 270 34.4
FAN28G2091 Fragaria x ananassa HOM05D000240 ORTHO05D002608 5.5e-20 102.4 211 39.3
Hma1.2p1_0595F.1_g186120 Hydrangea macrophylla HOM05D000240 ORTHO05D015017 4.7e-19 99.4 211 40.8
Aa31LG3G2730 Aethionema arabicum HOM05D000240 ORTHO05D002608 6.1e-19 99.0 271 33.2
ECA240G1295 Erigeron canadensis HOM05D000240 ORTHO05D002608 6.1e-19 99.0 129 48.1
VMungo0647G0327 Vigna mungo HOM05D000240 ORTHO05D015017 1.0e-18 98.2 216 39.4
FAN10G3808 Fragaria x ananassa HOM05D000240 ORTHO05D015017 1.4e-18 97.8 240 35.8
BcaB03g11571 Brassica carinata HOM05D000240 ORTHO05D002608 5.2e-18 95.9 273 33.7
CARHR084660 Cardamine hirsuta HOM05D000240 ORTHO05D002608 8.8e-18 95.1 270 34.8
A03p35680 Brassica napus HOM05D000240 ORTHO05D002608 1.2e-17 94.7 270 33.3
SGA_v2.0_scaffold105G30298 Striga asiatica HOM05D000240 ORTHO05D002608 1.5e-17 94.4 285 29.8
BraA03t12743Z Brassica rapa HOM05D000240 ORTHO05D002608 2.6e-17 93.6 273 33.7
Psat6g089400 Pisum sativum HOM05D000240 ORTHO05D015017 2.6e-17 93.6 136 43.4
BolC3t16603H Brassica oleracea HOM05D000240 ORTHO05D002608 7.5e-17 92.0 273 33.7
Gohir.D11G323100 Gossypium hirsutum HOM05D000240 ORTHO05D002608 9.7e-17 91.7 335 28.4
BcaC01g04262 Brassica carinata HOM05D000240 ORTHO05D002608 1.3e-16 91.3 270 33.3
PGR031G0545 Punica granatum HOM05D000240 ORTHO05D002608 1.3e-16 91.3 225 33.8
TPR.G2588 Trifolium pratense HOM05D000240 ORTHO05D002608 2.8e-16 90.1 220 35.0
Gorai.007G353100 Gossypium raimondii HOM05D000240 ORTHO05D002608 4.8e-16 89.4 335 28.1
DCAR_006071 Daucus carota HOM05D000240 ORTHO05D002608 6.3e-16 89.0 178 38.2
C03p43330 Brassica napus HOM05D000240 ORTHO05D002608 8.3e-16 88.6 267 33.0
Gohir.A11G307601 Gossypium hirsutum HOM05D000240 ORTHO05D002608 2.4e-15 87.0 259 30.5
FAN28G0852 Fragaria x ananassa HOM05D000240 ORTHO05D002608 7.0e-15 85.5 231 35.1
Oeu059334.1 Olea europaea HOM05D000240 ORTHO05D002608 1.6e-14 84.3 229 32.3
Lsat_1_v5_gn_7_4320 Lactuca sativa HOM05D000240 ORTHO05D015017 1.7e-13 80.9 94 51.1
Manes.12G155600 Manihot esculenta HOM05D000240 ORTHO05D002608 2.2e-13 80.5 138 43.5
COL.COLO4_07160 Corchorus olitorius HOM05D000240 ORTHO05D015017 8.5e-13 78.6 65 64.6
Os09g0421166 Oryza sativa ssp. japonica HOM05D000240 ORTHO05D015017 5.5e-12 75.9 100 45.0
Migut.J01665 Erythranthe guttata HOM05D000240 ORTHO05D002608 1.6e-11 74.3 193 31.1
CDE05G3239 Ceratophyllum demersum HOM05D000240 ORTHO05D015017 3.6e-11 73.2 137 37.2
PSO384G4909 Papaver somniferum HOM05D000240 ORTHO05D002608 2.3e-10 70.5 79 46.8
MSTRG.6373 Avicennia marina HOM05D000240 ORTHO05D002608 3.4e-09 66.6 204 29.4
unitig_21.g20920 Utricularia gibba HOM05D000240 ORTHO05D002608 7.5e-09 65.5 83 44.6
Aqoxy1G00453 Aquilegia oxysepala HOM05D000240 ORTHO05D002608 1.1e-07 61.6 118 39.8
SalBow6G3141 Salvia bowleyana HOM05D000240 ORTHO05D002608 7.7e-06 55.5 132 33.3


User provided reference genes

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