Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 3.3e-207 724.9 399 100.0
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 7.7e-164 580.9 401 79.6
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 1.2e-108 397.5 390 60.3
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.1e-104 384.4 394 55.6
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 6.4e-102 375.2 404 54.5
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 2.4e-101 373.2 394 55.1
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 4.3e-98 362.5 399 54.4
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 5.6e-98 362.1 319 63.0
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 4.9e-94 349.0 386 50.8
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.9e-93 347.1 399 50.6
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 7.1e-93 345.1 394 50.0
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 2.7e-92 343.2 392 51.8
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 4.6e-92 342.4 386 50.8
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 6.0e-92 342.0 406 50.0
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 6.0e-92 342.0 392 51.5
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.0e-91 341.3 392 51.8
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.3e-91 340.9 392 50.8
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.7e-91 340.5 392 51.5
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 2.5e-90 336.7 386 50.0
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 1.2e-89 334.3 401 49.6
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 2.8e-89 333.2 391 49.6
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 8.1e-89 331.6 395 49.4
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.1e-88 331.3 392 49.7
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.4e-88 330.9 392 49.5
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 3.1e-88 329.7 386 49.2
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 3.1e-88 329.7 391 48.8
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 4.0e-88 329.3 400 48.5
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 6.8e-88 328.6 395 50.6
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 8.9e-88 328.2 399 49.1
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 8.9e-88 328.2 399 49.1
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 1.2e-87 327.8 397 48.9
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 1.5e-87 327.4 395 48.9
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 1.5e-87 327.4 387 48.6
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 1.5e-87 327.4 393 51.4
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 2.0e-87 327.0 386 48.2
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 2.0e-87 327.0 396 49.0
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 3.4e-87 326.2 400 48.0
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 3.4e-87 326.2 387 48.1
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 9.9e-87 324.7 400 48.2
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 2.9e-86 323.2 409 49.4
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 6.4e-86 322.0 401 48.9
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 1.9e-85 320.5 393 49.1
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 3.2e-85 319.7 393 48.1
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 7.1e-85 318.5 414 49.0
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 1.6e-84 317.4 403 47.1
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 2.1e-84 317.0 390 49.7
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 2.1e-84 317.0 387 47.3
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 2.7e-84 316.6 403 47.4
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 2.7e-84 316.6 385 46.8
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 2.7e-84 316.6 399 48.6
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 6.0e-84 315.5 405 45.9
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 1.7e-83 313.9 396 48.2
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 2.3e-83 313.5 389 49.4
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.1e-82 311.2 398 47.2
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 1.5e-82 310.8 389 47.6
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.5e-82 310.8 391 46.0
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.5e-82 310.8 400 48.0
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 1.5e-82 310.8 402 49.0
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 2.5e-82 310.1 392 45.4
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 3.3e-82 309.7 389 47.3
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 5.6e-82 308.9 396 46.7
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 7.3e-82 308.5 391 44.5
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 7.3e-82 308.5 406 46.6
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 1.3e-81 307.8 402 46.0
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 8.1e-81 305.1 385 45.7
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.1e-80 304.7 405 46.7
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 5.3e-80 302.4 396 47.2
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 6.9e-80 302.0 397 46.6
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 1.2e-79 301.2 397 46.9
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 2.6e-79 300.1 393 45.8
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 3.4e-79 299.7 396 46.2
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 7.6e-79 298.5 397 46.1
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.3e-78 297.7 396 46.0
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 1.3e-78 297.7 398 45.2
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 1.3e-78 297.7 405 46.7
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 2.2e-78 297.0 396 46.2
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 3.8e-78 296.2 409 43.8
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 4.9e-78 295.8 396 46.5
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 1.1e-77 294.7 395 46.8
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.9e-77 293.9 396 46.2
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 3.2e-77 293.1 404 44.6
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 3.2e-77 293.1 392 43.4
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 1.2e-76 291.2 418 46.4
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 1.6e-76 290.8 402 46.8
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 2.7e-76 290.0 390 46.4
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 3.9e-75 286.2 386 43.8
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 9.6e-74 281.6 385 42.3
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 1.3e-73 281.2 338 47.0
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 1.6e-73 280.8 386 44.3
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 2.1e-73 280.4 380 46.3
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 4.8e-73 279.3 387 43.9
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 4.5e-71 272.7 384 45.3
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 3.8e-70 269.6 363 44.4
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 8.4e-70 268.5 388 42.3
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 1.1e-69 268.1 349 45.8
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 1.4e-69 267.7 383 44.6
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 1.9e-69 267.3 396 43.9
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 7.1e-69 265.4 398 41.2
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 9.3e-69 265.0 420 41.9
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 1.2e-68 264.6 354 45.5
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 3.5e-68 263.1 453 40.0
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 3.5e-68 263.1 386 40.2
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 6.0e-68 262.3 388 41.2
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 1.8e-67 260.8 387 41.3
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 6.7e-67 258.8 353 44.8
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 8.7e-67 258.5 361 45.2
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 7.4e-66 255.4 291 50.2
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 7.4e-66 255.4 398 41.7
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 1.0e-62 245.0 392 38.8
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 6.5e-62 242.3 401 40.4
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 8.4e-62 241.9 269 54.6
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 9.3e-61 238.4 392 38.0
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 2.1e-60 237.3 408 39.2
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 2.7e-60 236.9 289 44.6
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 8.7e-59 231.9 387 40.6
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 8.7e-59 231.9 364 42.0
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 1.3e-57 228.0 288 43.4
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 1.3e-57 228.0 397 42.3
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 2.2e-54 217.2 369 40.9
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 7.9e-52 208.8 341 41.1
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 5.1e-51 206.1 326 40.2
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 8.7e-51 205.3 289 44.3
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.5e-50 204.5 395 35.2
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 3.7e-49 199.9 366 38.3
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 8.8e-43 178.7 299 39.5
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 4.3e-42 176.4 453 33.3
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 1.5e-39 167.9 397 35.0
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.0e-38 162.9 174 53.4
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.3e-30 138.3 254 33.5
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 1.9e-29 134.4 165 44.8
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 9.7e-26 122.1 260 35.0
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 8.5e-22 109.0 181 36.5
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 8.5e-22 109.0 179 35.8
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 6.8e-19 99.4 146 43.8
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 3.7e-17 93.6 120 45.0
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 1.6e-15 88.2 116 42.2
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 2.2e-14 84.3 172 35.5
CANSAT11G0844 Cannabis sativa HOM05D002008 ORTHO05D002054 3.1e-08 63.9 108 35.2


User provided reference genes

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