Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 9.3e-133 476.9 238 100.0
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 7.6e-111 404.1 297 71.7
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.5e-109 397.9 236 83.9
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.2e-100 370.2 237 78.1
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 1.0e-99 367.1 235 78.3
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.1e-98 363.6 229 77.7
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 4.4e-98 361.7 235 76.6
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 2.2e-97 359.4 236 74.2
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.4e-96 356.7 235 75.3
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 1.8e-96 356.3 244 71.3
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 5.3e-96 354.8 235 74.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 7.0e-96 354.4 238 74.4
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 9.1e-96 354.0 235 74.9
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 3.4e-95 352.1 233 73.8
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 3.4e-95 352.1 235 74.0
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 7.7e-95 350.9 235 74.5
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.0e-94 350.5 238 72.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.0e-94 350.5 238 72.3
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 2.2e-94 349.4 236 74.6
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 2.9e-94 349.0 265 68.3
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 5.0e-94 348.2 225 75.6
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 8.5e-94 347.4 235 72.3
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 2.5e-93 345.9 233 73.8
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 2.5e-93 345.9 268 67.9
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 3.2e-93 345.5 236 73.7
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 9.4e-93 344.0 224 76.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.2e-92 343.6 225 76.4
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.2e-92 343.6 231 73.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.6e-92 343.2 235 72.8
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.7e-92 342.4 236 72.9
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 4.7e-92 341.7 224 75.4
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.7e-92 341.7 236 72.9
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 4.7e-92 341.7 236 72.9
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 6.1e-92 341.3 235 72.3
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-91 340.5 241 69.7
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.0e-91 340.5 235 72.3
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 3.0e-91 339.0 237 70.9
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.7e-91 337.8 247 69.2
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.8e-91 337.4 235 71.1
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 1.5e-90 336.7 224 74.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.5e-90 336.7 239 69.9
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.5e-90 336.7 237 69.2
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 2.6e-90 335.9 234 69.7
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.3e-89 333.6 226 73.9
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.3e-89 333.6 234 69.2
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.3e-89 333.6 202 78.2
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 2.2e-89 332.8 222 74.3
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.2e-89 332.8 233 70.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 3.7e-89 332.0 227 73.1
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 6.3e-89 331.3 231 71.9
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 4.1e-88 328.6 229 70.3
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 5.3e-88 328.2 228 71.9
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 5.3e-88 328.2 227 70.0
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 9.1e-88 327.4 227 70.0
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 1.2e-87 327.0 234 68.8
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 1.2e-87 327.0 227 69.6
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 2.0e-87 326.2 227 70.9
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 2.6e-87 325.9 229 69.9
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 3.5e-87 325.5 233 69.1
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 5.9e-87 324.7 235 67.2
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.3e-86 323.6 227 68.7
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 2.2e-86 322.8 234 67.1
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 6.5e-86 321.2 235 67.2
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 6.5e-86 321.2 229 69.0
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 1.1e-85 320.5 238 67.6
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.5e-85 320.1 236 67.4
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 2.1e-84 316.2 227 68.3
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 1.0e-83 313.9 209 70.8
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 1.8e-83 313.2 232 69.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.5e-82 310.1 240 65.4
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 9.7e-82 307.4 236 63.6
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.7e-81 306.6 260 61.2
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 4.1e-80 302.0 200 77.5
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 5.3e-80 301.6 182 81.3
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.5e-79 298.9 236 64.0
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 3.5e-79 298.9 239 61.5
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 4.5e-79 298.5 235 65.5
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 7.7e-79 297.7 211 71.1
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.2e-77 292.4 212 66.0
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 5.5e-77 291.6 209 71.3
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.6e-76 288.9 224 63.8
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 8.8e-75 284.3 209 69.9
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.6e-71 273.5 209 67.0
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 3.5e-71 272.3 234 63.2
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 8.6e-70 267.7 210 65.2
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 3.3e-69 265.8 237 60.3
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 7.0e-64 248.1 181 67.4
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 9.2e-64 247.7 158 75.9
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 2.8e-60 236.1 155 74.8
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 5.2e-59 231.9 159 71.7
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 5.8e-58 228.4 380 39.7
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 7.8e-55 218.0 194 58.8
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 5.0e-54 215.3 153 71.2
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 3.3e-53 212.6 230 50.9
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.2e-50 204.1 228 51.8
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 3.4e-50 202.6 261 48.7
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 7.5e-50 201.4 228 45.2
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 1.9e-48 196.8 208 45.2
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.7e-46 190.3 163 60.1
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 2.5e-45 186.4 114 78.9
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 9.5e-45 184.5 165 60.0
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 2.8e-44 183.0 205 44.4
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 2.0e-42 176.8 239 46.4
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.4e-40 169.9 209 43.5
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 3.1e-35 152.9 163 50.9
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 3.4e-34 149.4 146 53.4
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 8.7e-30 134.8 213 43.2
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 1.4e-27 127.5 69 81.2
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.4e-27 126.7 69 82.6
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 1.5e-21 107.5 59 88.1
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.3e-20 104.4 216 31.5
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.2e-15 87.8 121 47.9
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 4.3e-13 79.3 102 40.2
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 5.3e-11 72.4 49 65.3
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-10 70.1 49 69.4
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 1.0e-09 68.2 44 75.0
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.1e-08 64.7 53 56.6
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 4.2e-08 62.8 176 30.1
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 3.5e-07 59.7 29 82.8
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 4.6e-07 59.3 68 48.5
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.3e-06 57.0 29 79.3
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 5.1e-06 55.8 43 62.8
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 5.1e-06 55.8 53 49.1
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 6.7e-06 55.5 46 54.3
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 6.7e-06 55.5 46 54.3
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 8.7e-06 55.1 46 54.3
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 8.7e-06 55.1 46 54.3
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 8.7e-06 55.1 46 54.3


User provided reference genes

Program Settings