Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 7.2e-209 730.3 369 100.0
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 7.7e-126 454.5 301 81.1
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.4e-111 407.1 301 73.1
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.4e-111 407.1 301 73.1
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.5e-110 403.7 301 71.4
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.6e-105 386.3 301 69.4
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 9.7e-105 384.4 301 67.1
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 4.8e-104 382.1 301 68.1
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 5.9e-102 375.2 363 58.4
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.9e-100 370.2 301 66.4
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.0e-98 364.4 318 62.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.4e-98 364.0 301 64.5
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.8e-98 363.6 301 63.5
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 4.4e-97 359.0 301 63.8
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 9.7e-97 357.8 299 63.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.3e-96 357.5 301 63.5
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.3e-96 357.5 301 62.8
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 2.2e-96 356.7 301 62.5
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 6.3e-96 355.1 301 61.8
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 6.3e-96 355.1 301 61.8
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 6.3e-96 355.1 301 64.5
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 6.3e-96 355.1 301 63.1
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.1e-95 354.4 327 59.3
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.1e-95 354.4 327 59.3
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 5.3e-95 352.1 301 63.1
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.6e-94 350.5 308 61.0
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 3.5e-94 349.4 327 59.0
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 3.5e-94 349.4 327 59.0
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 4.5e-94 349.0 301 62.5
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.0e-93 347.8 301 61.5
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.0e-93 347.8 301 63.1
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.3e-93 347.4 298 64.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 1.3e-93 347.4 301 61.8
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 1.7e-93 347.1 302 62.3
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.7e-93 347.1 302 60.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.2e-93 346.7 300 62.7
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.9e-93 346.3 301 60.8
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 2.9e-93 346.3 302 60.6
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 5.0e-93 345.5 301 60.1
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.0e-93 345.5 301 62.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.0e-93 345.5 318 59.7
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 5.0e-93 345.5 302 59.9
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 6.5e-93 345.1 301 61.1
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 8.5e-93 344.7 301 61.5
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.9e-92 343.6 301 62.1
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.9e-92 343.6 301 61.8
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.5e-92 343.2 301 62.1
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.5e-92 343.2 305 62.0
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 3.2e-92 342.8 301 60.1
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.2e-92 342.4 301 60.8
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 4.2e-92 342.4 306 60.1
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 5.5e-92 342.0 301 61.5
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 5.5e-92 342.0 301 61.8
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 7.2e-92 341.7 301 62.5
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 9.4e-92 341.3 302 62.9
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.2e-91 340.9 301 59.8
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.2e-91 340.9 301 61.8
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 1.2e-91 340.9 301 61.1
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.2e-91 340.9 301 61.1
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 2.1e-91 340.1 301 63.1
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.6e-91 339.3 327 57.2
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 4.7e-91 339.0 301 61.5
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 6.1e-91 338.6 301 61.5
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 8.0e-91 338.2 301 61.5
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 1.4e-90 337.4 379 55.4
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.8e-90 337.0 302 59.3
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 2.3e-90 336.7 303 60.7
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.0e-90 336.3 301 59.8
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 3.0e-90 336.3 301 61.8
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 3.0e-90 336.3 301 61.5
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 5.2e-90 335.5 301 61.1
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.2e-90 335.5 301 60.1
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.6e-89 333.2 300 62.0
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.6e-89 333.2 304 59.9
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.4e-89 332.8 301 59.1
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 5.7e-89 332.0 301 58.8
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.7e-88 330.5 372 54.3
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.2e-88 330.1 301 59.5
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 2.2e-88 330.1 298 59.4
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 2.8e-88 329.7 301 59.5
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 1.4e-87 327.4 302 58.6
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 9.1e-87 324.7 301 59.5
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.7e-86 323.2 260 68.8
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.7e-86 323.2 302 57.3
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 1.3e-85 320.9 301 58.5
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.7e-85 320.5 301 59.5
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.3e-85 320.1 301 56.1
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.9e-84 317.0 303 57.1
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 1.2e-83 314.3 301 57.5
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-83 314.3 387 49.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.1e-83 313.5 299 57.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.8e-83 313.2 301 57.5
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.0e-82 311.2 301 55.8
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 3.0e-82 309.7 301 57.5
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 5.2e-82 308.9 302 58.9
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 7.5e-81 305.1 301 56.5
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 1.3e-80 304.3 277 58.1
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.3e-80 302.0 300 55.0
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 8.3e-80 301.6 301 56.5
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 3.2e-79 299.7 302 54.0
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 9.2e-79 298.1 301 55.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.2e-78 297.7 301 53.2
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 2.0e-78 297.0 201 73.1
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.7e-78 296.6 254 59.4
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 4.5e-78 295.8 196 74.5
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.7e-77 293.9 301 54.5
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 3.9e-77 292.7 307 54.4
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 3.9e-77 292.7 302 53.6
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 8.6e-77 291.6 301 53.5
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.3e-76 289.7 301 53.2
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.6e-76 288.9 196 73.5
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 5.6e-76 288.9 244 63.1
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 7.3e-76 288.5 302 55.6
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.2e-75 287.7 293 56.0
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 2.1e-75 287.0 343 50.1
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.3e-74 283.5 301 52.5
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 3.4e-73 279.6 255 62.0
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.9e-71 273.9 302 51.7
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.5e-70 269.6 332 50.9
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 3.0e-69 266.5 308 50.0
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 5.0e-69 265.8 255 56.5
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.1e-67 260.4 298 48.3
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.8e-65 252.3 291 51.5
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.7e-64 250.8 269 53.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 1.7e-64 250.8 255 54.9
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.4e-63 247.7 308 49.0
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 5.4e-63 245.7 163 77.3
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 9.2e-63 245.0 256 52.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 7.8e-62 241.9 216 57.4
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 2.3e-61 240.4 268 49.6
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.3e-61 240.4 299 48.5
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 3.0e-61 240.0 269 53.2
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 6.6e-61 238.8 299 48.8
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 3.3e-60 236.5 179 69.3
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 2.1e-59 233.8 167 69.5
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 4.4e-57 226.1 297 45.5
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 1.3e-56 224.6 306 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 9.2e-55 218.4 198 56.6
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 6.6e-53 212.2 268 48.5
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 1.6e-51 207.6 268 47.8
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 3.2e-47 193.4 125 76.0
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.2e-46 191.4 312 38.5
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.0e-45 186.8 383 36.3
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 2.5e-44 183.7 319 39.5
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.1e-31 141.7 210 41.4
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.3e-29 134.0 79 74.7
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 4.8e-27 126.3 294 33.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 9.0e-18 95.5 121 47.9
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.5e-17 94.7 149 40.9
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 1.4e-15 88.2 121 46.3
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 3.2e-15 87.0 48 85.4
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 1.8e-13 81.3 64 70.3
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.9e-13 80.1 70 64.3
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 2.8e-11 73.9 59 62.7
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 2.2e-08 64.3 312 26.3


User provided reference genes

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