Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.2e-255 883.6 447 100.0
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 1.2e-154 550.4 451 67.4
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 3.6e-146 522.3 447 64.4
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.3e-145 519.6 446 64.1
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.5e-139 499.6 447 60.9
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 2.1e-130 469.9 255 89.8
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 2.4e-129 466.5 255 88.6
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 5.3e-129 465.3 255 88.6
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 6.9e-129 464.9 447 58.6
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 1.2e-128 464.2 255 87.8
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 2.6e-128 463.0 255 88.6
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.6e-128 463.0 259 86.1
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 3.4e-128 462.6 450 58.0
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 7.6e-128 461.5 447 58.6
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.3e-127 460.7 450 58.7
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.4e-126 457.2 255 85.5
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.9e-126 456.8 255 84.7
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.9e-126 456.8 255 84.7
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.9e-126 456.8 272 80.1
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 3.2e-126 456.1 255 83.9
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 1.2e-125 454.1 264 83.7
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 1.2e-125 454.1 255 86.7
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.6e-125 453.8 447 57.9
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 2.7e-125 453.0 255 84.7
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.7e-125 453.0 255 84.3
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 3.5e-125 452.6 255 86.3
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 7.8e-125 451.4 255 86.7
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 7.8e-125 451.4 453 56.5
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.3e-124 450.7 255 85.9
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 1.3e-124 450.7 269 82.9
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.7e-124 450.3 277 79.8
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 1.7e-124 450.3 255 85.5
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 1.7e-124 450.3 255 84.3
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 1.7e-124 450.3 255 85.9
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.3e-124 449.9 262 82.4
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.3e-124 449.9 262 82.4
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 2.3e-124 449.9 255 83.9
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 5.1e-124 448.7 255 85.1
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 6.6e-124 448.4 255 83.9
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 8.7e-124 448.0 255 84.7
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.9e-123 446.8 249 85.9
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 5.6e-123 445.3 254 85.8
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 5.6e-123 445.3 255 83.9
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 7.3e-123 444.9 451 55.7
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 1.3e-122 444.1 255 82.0
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.6e-122 443.7 278 77.3
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.6e-122 443.7 278 77.3
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 2.4e-121 439.9 255 84.7
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.4e-121 439.9 259 83.4
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 4.0e-121 439.1 252 82.9
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 5.3e-121 438.7 246 85.4
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 5.3e-121 438.7 252 83.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 5.3e-121 438.7 252 83.3
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 5.3e-121 438.7 250 84.4
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 5.3e-121 438.7 252 82.9
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 5.3e-121 438.7 252 83.3
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 6.9e-121 438.3 256 81.6
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 1.5e-120 437.2 252 82.9
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 1.5e-120 437.2 252 82.9
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 1.5e-120 437.2 263 81.4
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.0e-120 436.8 275 77.5
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 3.4e-120 436.0 264 81.1
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 3.4e-120 436.0 254 83.1
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.4e-118 430.6 259 81.5
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 5.4e-118 428.7 255 80.4
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 5.4e-118 428.7 255 82.7
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 7.1e-118 428.3 312 70.2
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 1.8e-116 423.7 255 81.6
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 5.1e-116 422.2 259 78.8
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 5.6e-115 418.7 255 80.0
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 5.6e-115 418.7 252 78.6
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 7.4e-115 418.3 255 80.8
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.8e-114 416.4 257 78.2
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 4.8e-114 415.6 255 79.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 4.8e-114 415.6 252 79.0
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 8.1e-114 414.8 255 79.2
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.4e-113 414.1 252 79.4
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 1.4e-113 414.1 254 79.9
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 2.4e-113 413.3 447 52.6
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 2.4e-113 413.3 252 78.2
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 3.1e-113 412.9 255 77.6
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 3.1e-113 412.9 253 79.1
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 4.5e-112 409.1 253 77.9
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 5.8e-112 408.7 253 77.1
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 3.8e-111 406.0 253 77.9
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 4.9e-111 405.6 239 82.8
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 4.2e-110 402.5 229 83.0
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 5.5e-110 402.1 225 86.2
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 9.0e-105 384.8 221 84.2
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 2.6e-104 383.3 255 75.7
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 1.0e-103 381.3 219 82.6
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.3e-98 364.4 259 72.6
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 1.2e-93 347.8 257 64.6
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 4.1e-89 332.8 234 71.4
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 3.9e-84 316.2 251 61.4
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 6.7e-84 315.5 255 62.0
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 1.1e-81 308.1 259 64.1
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.0e-79 301.6 173 82.7
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 9.4e-78 295.0 163 86.5
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 1.6e-77 294.3 267 54.7
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 7.0e-73 278.9 187 72.2
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 1.3e-71 274.6 262 51.9
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.6e-69 266.5 144 86.8
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 2.3e-60 237.3 224 49.1
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 6.3e-58 229.2 132 87.9
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 4.2e-54 216.5 125 83.2
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 4.2e-54 216.5 125 83.2
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 6.8e-52 209.1 134 76.9
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.9e-52 208.8 136 75.0
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 3.4e-43 180.3 287 36.6
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 2.5e-38 164.1 246 37.8
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 9.2e-33 145.6 107 72.0
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.1e-30 138.7 267 40.1
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 1.9e-30 137.9 238 35.7
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 6.8e-28 129.4 201 44.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 3.4e-27 127.1 83 73.5
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 1.6e-21 108.2 92 60.9
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.1e-21 105.9 53 90.6
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 5.4e-17 93.2 65 64.6
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 7.8e-16 89.4 126 45.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.9e-14 84.7 126 43.7
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 5.6e-14 83.2 161 39.8
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 1.2e-11 75.5 38 89.5
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.3e-07 62.0 39 74.4
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.3e-07 62.0 39 74.4
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 3.0e-07 60.8 303 24.1
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 8.7e-07 59.3 250 24.4
HPP92_002889 Vanilla planifolia HOM05D006315 ORTHO05D008052 8.7e-07 59.3 34 76.5
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 2.5e-06 57.8 249 24.1
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 4.3e-06 57.0 250 24.4
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 5.6e-06 56.6 249 24.1
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.3e-06 56.2 251 23.9
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 7.3e-06 56.2 250 24.8


User provided reference genes

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