Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.0e-127 459.1 236 100.0
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 2.5e-106 389.0 236 86.0
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 5.7e-90 334.7 237 73.4
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.0e-86 323.9 237 73.4
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 3.8e-86 322.0 236 73.3
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.5e-85 319.3 236 73.3
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 1.3e-83 313.5 233 70.4
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 6.7e-83 311.2 233 70.8
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.9e-82 309.7 233 70.4
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.9e-82 309.7 233 70.4
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 7.4e-82 307.8 238 68.1
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 7.4e-82 307.8 233 70.0
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.3e-81 307.0 234 68.4
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 2.8e-81 305.8 236 69.9
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 4.8e-81 305.1 236 68.2
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 5.3e-80 301.6 225 70.7
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 8.5e-78 294.3 240 65.0
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.9e-77 293.1 240 67.1
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.9e-77 293.1 237 66.2
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.9e-77 293.1 233 68.2
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 2.5e-77 292.7 239 65.7
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.2e-77 292.4 236 69.1
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 4.2e-77 292.0 234 67.9
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 5.5e-77 291.6 220 69.5
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.6e-76 290.0 233 67.0
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.1e-76 289.7 233 66.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 3.6e-76 288.9 235 66.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 4.6e-76 288.5 233 64.8
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 6.1e-76 288.1 233 66.5
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 7.9e-76 287.7 223 68.6
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 7.9e-76 287.7 228 68.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 3.9e-75 285.4 231 64.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 6.7e-75 284.6 238 65.5
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 3.3e-74 282.3 238 65.1
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 4.3e-74 282.0 236 63.1
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 5.7e-74 281.6 239 65.3
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 7.4e-74 281.2 233 63.1
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 7.4e-74 281.2 236 63.1
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 9.7e-74 280.8 237 65.4
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 9.7e-74 280.8 239 63.2
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.3e-73 280.4 233 64.4
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.2e-73 279.6 221 67.4
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 2.2e-73 279.6 235 62.1
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.8e-73 279.3 236 63.6
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.8e-73 279.3 237 64.6
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 2.8e-73 279.3 242 63.6
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 6.3e-73 278.1 239 63.6
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 8.2e-73 277.7 220 64.5
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 1.1e-72 277.3 191 70.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.4e-72 276.9 233 62.7
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.8e-72 276.6 231 63.2
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 2.4e-72 276.2 218 65.6
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 2.4e-72 276.2 241 62.2
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 4.1e-72 275.4 233 64.4
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 6.9e-72 274.6 211 66.4
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.2e-71 273.9 233 62.2
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.5e-71 273.5 233 62.2
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.6e-71 272.7 233 61.4
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 2.6e-71 272.7 233 62.7
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.0e-70 270.8 232 61.6
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 1.0e-70 270.8 237 63.7
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.3e-70 270.4 215 65.6
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.3e-70 270.4 211 65.4
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.9e-70 269.2 232 61.2
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 2.9e-70 269.2 232 62.5
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 2.9e-70 269.2 232 62.5
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 2.9e-70 269.2 232 60.3
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.8e-70 268.9 233 63.5
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 8.5e-70 267.7 233 62.2
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 8.5e-70 267.7 233 64.8
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-69 266.9 235 61.3
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 2.5e-69 266.2 232 61.2
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 4.2e-69 265.4 232 62.5
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.5e-69 265.0 232 62.5
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.5e-69 265.0 232 62.5
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 7.2e-69 264.6 231 62.8
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-68 263.8 232 60.3
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 2.1e-68 263.1 208 64.4
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.1e-68 263.1 233 62.2
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.1e-68 263.1 232 61.2
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 3.6e-68 262.3 232 60.8
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 7.9e-68 261.2 232 60.3
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 7.9e-68 261.2 232 60.3
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 1.0e-67 260.8 232 60.8
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 3.0e-67 259.2 236 62.3
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 8.8e-67 257.7 189 66.7
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 8.8e-67 257.7 235 58.7
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 8.8e-67 257.7 236 61.4
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.5e-66 256.9 230 59.6
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 2.6e-66 256.1 236 58.9
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 7.4e-66 254.6 232 59.5
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 2.8e-65 252.7 209 65.1
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 4.8e-65 251.9 197 66.5
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 6.3e-65 251.5 236 58.9
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.4e-64 249.6 175 73.7
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 3.5e-63 245.7 192 64.1
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 4.5e-63 245.4 200 63.0
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 1.0e-62 244.2 207 62.3
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.2e-62 243.0 176 68.8
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.9e-61 240.0 214 59.3
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.5e-61 239.6 230 56.5
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.2e-60 237.3 194 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 2.7e-60 236.1 218 56.4
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 6.1e-60 235.0 177 64.4
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 8.8e-59 231.1 227 57.7
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.3e-58 229.2 177 63.8
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.3e-54 217.2 131 77.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 7.2e-53 211.5 145 68.3
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.0e-46 191.0 146 61.6
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.0e-46 191.0 147 61.2
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 1.3e-46 190.7 146 61.6
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 6.5e-46 188.3 146 60.3
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.9e-45 186.8 143 61.5
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 7.2e-45 184.9 147 58.5
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 7.2e-45 184.9 147 58.5
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 7.2e-45 184.9 147 58.5
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 9.4e-45 184.5 147 58.5
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 9.4e-45 184.5 147 58.5
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.6e-44 183.7 146 58.9
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 2.1e-44 183.3 147 57.8
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 6.1e-44 181.8 147 57.1
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.1e-44 181.8 131 75.6
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.8e-43 180.3 145 57.9
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.8e-43 180.3 147 57.1
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 4.4e-42 175.6 239 48.1
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.8e-41 172.9 180 49.4
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 7.7e-39 164.9 166 50.0
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.5e-37 159.8 146 51.4
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.4e-35 154.1 102 73.5
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 3.4e-34 149.4 104 69.2
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 1.8e-32 143.7 146 47.3
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.7e-30 137.1 106 62.3
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 1.8e-27 127.1 148 43.9
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 4.0e-27 125.9 135 51.1
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 9.8e-26 121.3 237 39.7
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 9.8e-26 121.3 88 67.0
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.7e-25 119.4 155 41.9
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.1e-24 117.9 106 66.0
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 3.5e-23 112.8 155 38.7
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.5e-23 112.8 155 40.0
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 5.0e-22 109.0 197 34.5
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 8.1e-20 101.7 231 34.2
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 3.1e-19 99.8 150 35.3
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 4.0e-19 99.4 205 36.6
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 1.2e-18 97.8 155 35.5
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.2e-18 97.8 100 52.0
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.7e-17 94.0 71 57.7
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.9e-17 92.4 67 68.7
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.1e-13 81.3 113 38.1
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 9.2e-08 61.6 48 60.4
AUR62003563 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.0e-06 58.2 84 35.7
AUR62017877 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.0e-06 58.2 84 35.7
Hma1.2p1_1893F.1_g306730 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 1.0e-06 58.2 59 47.5


User provided reference genes

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