Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04876 Vaccinium macrocarpon HOM05D003701 ORTHO05D004771 0.0e+00 1098.2 556 100.0
Rhsim09G0152400 Rhododendron simsii HOM05D003701 ORTHO05D004771 3.1e-219 765.4 557 75.0
CSS0025729 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 2.1e-204 716.1 556 70.0
Dinv11780 Davidia involucrata HOM05D003701 ORTHO05D004771 1.1e-200 703.7 558 68.1
TAR623G1268 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.2e-196 688.0 557 67.1
Nitab4.5_0001029g0070 Nicotiana tabacum HOM05D003701 ORTHO05D004771 2.9e-193 679.1 568 66.4
TAR633G1876 Trochodendron aralioides HOM05D003701 ORTHO05D004771 1.4e-192 676.8 556 65.5
PGSC0003DMG400016016 Solanum tuberosum HOM05D003701 ORTHO05D004771 9.3e-192 674.1 556 66.2
MSTRG.8153 Avicennia marina HOM05D003701 ORTHO05D004771 1.2e-191 673.7 558 65.2
CAN.G186.45 Capsicum annuum HOM05D003701 ORTHO05D004771 1.6e-191 673.3 556 65.6
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.7e-191 672.5 555 65.4
Nitab4.5_0005490g0010 Nicotiana tabacum HOM05D003701 ORTHO05D004771 3.5e-191 672.2 559 65.3
Actinidia38848 Actinidia chinensis HOM05D003701 ORTHO05D004771 3.9e-190 668.7 556 65.6
MSTRG.367 Avicennia marina HOM05D003701 ORTHO05D004771 1.9e-189 666.4 558 64.3
Migut.F01774 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.5e-189 666.0 556 64.6
GSVIVG01016288001 Vitis vinifera HOM05D003701 ORTHO05D004771 3.3e-189 665.6 552 65.2
PGSC0003DMG400024392 Solanum tuberosum HOM05D003701 ORTHO05D004771 9.6e-189 664.1 559 64.6
Hma1.2p1_1004F.1_g246800 Hydrangea macrophylla HOM05D003701 ORTHO05D004771 1.3e-188 663.7 557 65.0
Sopen04g004770 Solanum pennellii HOM05D003701 ORTHO05D004771 3.6e-188 662.1 544 65.8
Peaxi162Scf00747g00122 Petunia axillaris HOM05D003701 ORTHO05D004771 4.8e-188 661.8 557 64.8
Solyc04g009620.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 8.1e-188 661.0 544 66.2
Sopen04g019270 Solanum pennellii HOM05D003701 ORTHO05D004771 1.4e-187 660.2 559 64.6
Solyc04g049350.4 Solanum lycopersicum HOM05D003701 ORTHO05D004771 2.4e-187 659.4 559 64.6
Duzib106G0278 Durio zibethinus HOM05D003701 ORTHO05D004771 9.9e-186 654.1 555 63.6
Atru.chr12.740 Acer truncatum HOM05D003701 ORTHO05D004771 1.3e-185 653.7 550 64.5
DCAR_015315 Daucus carota HOM05D003701 ORTHO05D004771 1.7e-185 653.3 546 65.6
Thecc.10G072600 Theobroma cacao HOM05D003701 ORTHO05D004771 4.9e-185 651.7 555 63.8
Gohir.A10G206500 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.4e-184 648.3 553 63.7
Manes.10G045200 Manihot esculenta HOM05D003701 ORTHO05D004771 9.3e-184 647.5 556 63.7
Gohir.A05G297100 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.7e-183 646.0 555 62.9
Gohir.D05G297000 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.7e-183 646.0 555 63.1
Gorai.009G314200 Gossypium raimondii HOM05D003701 ORTHO05D004771 2.7e-183 646.0 555 63.1
Gohir.D10G214600 Gossypium hirsutum HOM05D003701 ORTHO05D004771 6.0e-183 644.8 553 63.5
Potri.010G221600 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.3e-182 643.7 555 64.0
Hund12041 Selenicereus undatus HOM05D003701 ORTHO05D004771 1.8e-182 643.3 554 63.7
Ciclev10031547m.g Citrus clementina HOM05D003701 ORTHO05D004771 2.3e-182 642.9 552 63.6
HanXRQChr09g0249701 Helianthus annuus HOM05D003701 ORTHO05D004771 3.0e-182 642.5 558 62.7
Nn2g13085 Nelumbo nucifera HOM05D003701 ORTHO05D004771 5.1e-182 641.7 551 63.0
Ah.06g192010 Amaranthus hybridus HOM05D003701 ORTHO05D004771 6.7e-182 641.3 553 62.4
HanXRQChr15g0496661 Helianthus annuus HOM05D003701 ORTHO05D004771 1.1e-181 640.6 559 63.0
Potri.008G040700 Populus trichocarpa HOM05D003701 ORTHO05D004771 1.5e-181 640.2 555 62.5
Glyma.20G179500 Glycine max HOM05D003701 ORTHO05D004771 2.5e-181 639.4 556 63.7
Sc06g0004590 Simmondsia chinensis HOM05D003701 ORTHO05D004771 1.3e-180 637.1 557 62.7
arahy.Tifrunner.gnm1.ann1.X76XU5 Arachis hypogaea HOM05D003701 ORTHO05D004771 1.6e-180 636.7 553 63.5
ECA232G2521 Erigeron canadensis HOM05D003701 ORTHO05D004771 1.6e-180 636.7 546 64.8
VMungo0720G1162 Vigna mungo HOM05D003701 ORTHO05D004771 3.6e-180 635.6 553 63.7
Sc09g0006470 Simmondsia chinensis HOM05D003701 ORTHO05D004771 4.8e-180 635.2 556 62.2
arahy.Tifrunner.gnm1.ann1.V7IKH4 Arachis hypogaea HOM05D003701 ORTHO05D004771 8.1e-180 634.4 552 63.0
QL08p056106 Quercus lobata HOM05D003701 ORTHO05D004771 8.1e-180 634.4 552 63.9
AUR62037661 Chenopodium quinoa HOM05D003701 ORTHO05D004771 1.8e-179 633.3 573 61.4
AUR62041045 Chenopodium quinoa HOM05D003701 ORTHO05D004771 4.0e-179 632.1 553 62.9
MBI10_g04889_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 6.9e-179 631.3 558 61.8
ATR0115G006 Amborella trichopoda HOM05D003701 ORTHO05D004771 1.5e-178 630.2 545 62.8
Lj1A914T43 Lonicera japonica HOM05D003701 ORTHO05D004771 2.0e-178 629.8 542 63.7
Sabra08G0027700 Salix brachista HOM05D003701 ORTHO05D004771 2.6e-178 629.4 560 62.0
CSS0011231 Camellia sinensis var. sinensis HOM05D003701 ORTHO05D004771 4.5e-178 628.6 558 62.9
Glyma.10G211400 Glycine max HOM05D003701 ORTHO05D004771 4.5e-178 628.6 556 62.2
Eucgr.G02824 Eucalyptus grandis HOM05D003701 ORTHO05D004771 7.6e-178 627.9 547 63.1
Aqoxy1G01249 Aquilegia oxysepala HOM05D003701 ORTHO05D004771 9.9e-178 627.5 529 63.1
TWI74G0111 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.7e-177 626.7 557 61.9
TWI74G0263 Tripterygium wilfordii HOM05D003701 ORTHO05D004771 1.7e-177 626.7 557 61.9
Phvul.007G094200 Phaseolus vulgaris HOM05D003701 ORTHO05D004771 2.9e-177 625.9 543 63.4
THA.LOC104827296 Tarenaya hassleriana HOM05D003701 ORTHO05D004771 2.9e-177 625.9 543 63.0
Cpa.g.sc53.71 Carica papaya HOM05D003701 ORTHO05D004771 3.8e-177 625.5 572 61.4
Gorai.011G240200 Gossypium raimondii HOM05D003701 ORTHO05D004771 3.8e-177 625.5 514 65.0
AL1G55580 Arabidopsis lyrata HOM05D003701 ORTHO05D004771 6.4e-177 624.8 551 61.7
CANSAT56G3258 Cannabis sativa HOM05D003701 ORTHO05D004771 6.4e-177 624.8 549 62.3
BcaB02g11304 Brassica carinata HOM05D003701 ORTHO05D004771 8.4e-177 624.4 552 61.6
CiPaw.02G174300 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.1e-176 624.0 550 63.6
MBI02_g43493_MAGBIO Magnolia biondii HOM05D003701 ORTHO05D004771 1.1e-176 624.0 544 62.3
A05p20860 Brassica napus HOM05D003701 ORTHO05D004771 2.4e-176 622.9 547 62.0
BraA05t20991Z Brassica rapa HOM05D003701 ORTHO05D004771 2.4e-176 622.9 547 62.0
Thhalv10011486m.g Eutrema salsugineum HOM05D003701 ORTHO05D004771 2.4e-176 622.9 547 62.2
BcaC05g27549 Brassica carinata HOM05D003701 ORTHO05D004771 3.2e-176 622.5 547 62.0
A08p04400 Brassica napus HOM05D003701 ORTHO05D004771 3.2e-176 622.5 547 61.8
C05p35350 Brassica napus HOM05D003701 ORTHO05D004771 3.2e-176 622.5 547 62.0
BolC5t32248H Brassica oleracea HOM05D003701 ORTHO05D004771 3.2e-176 622.5 547 62.0
BolC8t47272H Brassica oleracea HOM05D003701 ORTHO05D004771 3.2e-176 622.5 547 61.8
Lsat_1_v5_gn_2_114381 Lactuca sativa HOM05D003701 ORTHO05D004771 3.2e-176 622.5 548 62.8
Actinidia03057 Actinidia chinensis HOM05D003701 ORTHO05D004771 5.5e-176 621.7 550 62.2
BcaC07g37102 Brassica carinata HOM05D003701 ORTHO05D004771 5.5e-176 621.7 547 61.8
C08p04710 Brassica napus HOM05D003701 ORTHO05D004771 5.5e-176 621.7 547 61.8
BraA08t32466Z Brassica rapa HOM05D003701 ORTHO05D004771 7.1e-176 621.3 547 61.6
Carub.0001s3800 Capsella rubella HOM05D003701 ORTHO05D004771 9.3e-176 620.9 544 62.1
CARHR038850 Cardamine hirsuta HOM05D003701 ORTHO05D004771 9.3e-176 620.9 548 61.1
AT1G48850 Arabidopsis thaliana HOM05D003701 ORTHO05D004771 1.2e-175 620.5 550 61.5
Ca_10573_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.2e-175 620.5 545 63.7
Ca_29596_v3 Cicer arietinum L. HOM05D003701 ORTHO05D004771 1.2e-175 620.5 545 63.7
PSO063G5795 Papaver somniferum HOM05D003701 ORTHO05D004771 1.2e-175 620.5 526 63.1
Sp1g35740 Schrenkiella parvula HOM05D003701 ORTHO05D004771 1.6e-175 620.2 547 61.6
BcaB04g17381 Brassica carinata HOM05D003701 ORTHO05D004771 3.5e-175 619.0 549 61.7
CsaV3_6G036360 Cucumis sativus L. HOM05D003701 ORTHO05D004771 6.0e-175 618.2 544 61.9
PSO339G3023 Papaver somniferum HOM05D003701 ORTHO05D004771 6.0e-175 618.2 528 62.7
Lj5g0008768 Lotus japonicus HOM05D003701 ORTHO05D004771 7.9e-175 617.8 542 61.6
MD01G1108900 Malus domestica HOM05D003701 ORTHO05D004771 7.9e-175 617.8 554 61.6
FAN03G0046 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.0e-174 617.5 549 62.5
TPR.G1904 Trifolium pratense HOM05D003701 ORTHO05D004771 3.0e-174 615.9 544 63.2
MELO3C019790.2 Cucumis melo HOM05D003701 ORTHO05D004771 3.9e-174 615.5 544 61.8
FvH4_7g19670 Fragaria vesca HOM05D003701 ORTHO05D004771 5.1e-174 615.1 542 62.9
ClCG08G007450 Citrullus lanatus HOM05D003701 ORTHO05D004771 6.7e-174 614.8 544 61.4
Medtr1g095250 Medicago truncatula HOM05D003701 ORTHO05D004771 6.7e-174 614.8 543 62.1
FAN10G2919 Fragaria x ananassa HOM05D003701 ORTHO05D004771 2.5e-173 612.8 542 62.7
Lalb_Chr02g0142141 Lupinus albus HOM05D003701 ORTHO05D004771 3.3e-173 612.5 553 60.9
Sabra10G0171500 Salix brachista HOM05D003701 ORTHO05D004771 3.3e-173 612.5 604 57.9
EL10Ac2g03249 Beta vulgaris HOM05D003701 ORTHO05D004771 4.3e-173 612.1 553 60.6
Lalb_Chr06g0162271 Lupinus albus HOM05D003701 ORTHO05D004771 4.3e-173 612.1 550 62.0
Gorai.011G240100 Gossypium raimondii HOM05D003701 ORTHO05D004771 5.6e-173 611.7 555 60.0
RcHm_v2.0_Chr1g0363491 Rosa chinensis HOM05D003701 ORTHO05D004771 5.6e-173 611.7 544 62.7
FAN06G0474 Fragaria x ananassa HOM05D003701 ORTHO05D004771 7.4e-173 611.3 542 62.5
CDE04G2332 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 2.1e-172 609.8 545 61.5
Aa31LG10G4830 Aethionema arabicum HOM05D003701 ORTHO05D004771 6.2e-172 608.2 549 60.1
Gohir.A10G206400 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.4e-171 607.1 555 59.3
Sed0016616 Sechium edule HOM05D003701 ORTHO05D004771 1.4e-171 607.1 544 60.7
arahy.Tifrunner.gnm1.ann1.6FL4NC Arachis hypogaea HOM05D003701 ORTHO05D004771 4.5e-170 602.1 556 60.3
unitig_899.g14441 Utricularia gibba HOM05D003701 ORTHO05D004771 7.6e-170 601.3 551 59.9
Migut.F01773 Erythranthe guttata HOM05D003701 ORTHO05D004771 2.2e-169 599.7 515 62.5
MD07G1175200 Malus domestica HOM05D003701 ORTHO05D004771 1.2e-167 594.0 547 60.3
Duzib114G1041 Durio zibethinus HOM05D003701 ORTHO05D004771 6.0e-167 591.7 559 59.4
PGR142G1908 Punica granatum HOM05D003701 ORTHO05D004771 1.3e-166 590.5 543 60.6
FAN01G1080 Fragaria x ananassa HOM05D003701 ORTHO05D004771 5.7e-165 585.1 581 58.2
GSVIVG01025176001 Vitis vinifera HOM05D003701 ORTHO05D004771 7.4e-165 584.7 505 60.8
Os03g0254800 Oryza sativa ssp. japonica HOM05D003701 ORTHO05D004771 4.8e-164 582.0 517 60.5
SEGI_31492 Sequoiadendron giganteum HOM05D003701 ORTHO05D004771 1.1e-163 580.9 521 60.7
SalBow4G1339 Salvia bowleyana HOM05D003701 ORTHO05D004771 5.3e-163 578.6 551 60.1
FAN10G2344 Fragaria x ananassa HOM05D003701 ORTHO05D004771 1.2e-162 577.4 542 60.5
DCAR_012659 Daucus carota HOM05D003701 ORTHO05D004771 1.1e-160 570.9 508 61.0
CAN.G186.44 Capsicum annuum HOM05D003701 ORTHO05D004771 1.9e-160 570.1 497 60.0
Gohir.D05G297025 Gossypium hirsutum HOM05D003701 ORTHO05D004771 5.5e-160 568.5 389 74.8
HPP92_012666 Vanilla planifolia HOM05D003701 ORTHO05D004771 7.2e-160 568.2 521 59.7
AagrBONN_evm.TU.Sc2ySwM_369.393 Anthoceros agrestis HOM05D003701 ORTHO05D004771 7.9e-159 564.7 499 61.9
Psat6g184400 Pisum sativum HOM05D003701 ORTHO05D004771 5.1e-158 562.0 365 78.6
Mapoly0007s0052 Marchantia polymorpha HOM05D003701 ORTHO05D004771 8.7e-158 561.2 517 59.4
SMO146G0105 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 3.3e-157 559.3 531 57.6
Prupe.2G214400 Prunus persica HOM05D003701 ORTHO05D004771 1.8e-155 553.5 366 77.3
arahy.Tifrunner.gnm1.ann1.914CGH Arachis hypogaea HOM05D003701 ORTHO05D004771 1.8e-150 537.0 313 83.1
Oeu027479.1 Olea europaea HOM05D003701 ORTHO05D004771 4.4e-149 532.3 468 62.8
CiPaw.01G273500 Carya illinoinensis HOM05D003701 ORTHO05D004771 1.1e-147 527.7 465 63.2
Zm00001eb011020 Zea mays HOM05D003701 ORTHO05D004771 1.8e-147 526.9 332 79.8
Oeu007390.4 Olea europaea HOM05D003701 ORTHO05D004771 6.9e-147 525.0 464 61.9
Dinv31329 Davidia involucrata HOM05D003701 ORTHO05D004771 5.9e-146 521.9 464 62.9
CANSAT78G2428 Cannabis sativa HOM05D003701 ORTHO05D004771 8.5e-137 491.5 317 74.8
unitig_736.g22517 Utricularia gibba HOM05D003701 ORTHO05D004771 8.5e-137 491.5 543 52.1
CDE07G1562 Ceratophyllum demersum HOM05D003701 ORTHO05D004771 5.2e-134 482.3 545 52.1
Cre03.g145747 Chlamydomonas reinhardtii HOM05D003701 ORTHO05D004771 1.5e-128 464.2 500 53.0
MCO05G587 Micromonas commoda HOM05D003701 ORTHO05D004771 9.4e-128 461.5 490 52.4
COL.COLO4_23690 Corchorus olitorius HOM05D003701 ORTHO05D004771 8.0e-127 458.4 265 84.2
PRCOL_00001179 Prasinoderma coloniale HOM05D003701 ORTHO05D004771 1.2e-125 454.5 488 53.7
Eucgr.J01090 Eucalyptus grandis HOM05D003701 ORTHO05D004771 2.0e-125 453.8 462 55.6
Zm00001eb398410 Zea mays HOM05D003701 ORTHO05D004771 9.8e-125 451.4 330 68.5
Pp3c1_35940 Physcomitrium patens HOM05D003701 ORTHO05D004771 1.5e-120 437.6 292 74.3
CBR_g41627 Chara braunii HOM05D003701 ORTHO05D004771 3.8e-113 412.9 281 75.1
COL.COLO4_23691 Corchorus olitorius HOM05D003701 ORTHO05D004771 4.9e-108 396.0 384 58.3
Cc09_g02030 Coffea canephora HOM05D003701 ORTHO05D004771 8.6e-97 358.6 233 79.4
Haze_16899 Corylus avellana HOM05D003701 ORTHO05D004771 7.1e-91 339.0 351 55.8
Gohir.D10G214532 Gossypium hirsutum HOM05D003701 ORTHO05D004771 1.3e-89 334.7 243 70.4
Cc09_g02040 Coffea canephora HOM05D003701 ORTHO05D004771 7.6e-77 292.4 305 54.8
Haze_27259 Corylus avellana HOM05D003701 ORTHO05D004771 2.5e-72 277.3 313 48.9
Gohir.D10G214466 Gossypium hirsutum HOM05D003701 ORTHO05D004771 2.4e-70 270.8 308 51.0
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.4e-67 261.5 154 81.2
Cfa022484 Carpinus fangiana HOM05D003701 ORTHO05D004771 4.2e-67 260.0 470 38.7
TAR636G0034 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.9e-62 242.7 186 65.6
TAR636G0416 Trochodendron aralioides HOM05D003701 ORTHO05D004771 6.9e-62 242.7 186 65.6
RcHm_v2.0_Chr4g0427911 Rosa chinensis HOM05D003701 ORTHO05D004771 3.3e-56 223.8 220 60.5
MSTRG.366 Avicennia marina HOM05D003701 ORTHO05D004771 4.3e-48 196.8 261 45.6
FAN12G0728 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.2e-43 180.3 145 68.3
MD01G1109200 Malus domestica HOM05D003701 ORTHO05D004771 1.8e-38 164.9 157 61.1
Glyma.14G185633 Glycine max HOM05D003701 ORTHO05D004771 5.3e-38 163.3 99 82.8
SMO173G0015 Selaginella moellendorffii HOM05D003701 ORTHO05D004771 1.1e-32 145.6 220 48.2
FAN17G1952 Fragaria x ananassa HOM05D003701 ORTHO05D004771 3.4e-29 134.0 295 36.9
QL07p006097 Quercus lobata HOM05D003701 ORTHO05D030296 1.5e-24 118.6 82 74.4
Oeu052763.1 Olea europaea HOM05D003701 ORTHO05D030296 7.0e-22 109.8 60 91.7
QL07p006183 Quercus lobata HOM05D003701 ORTHO05D030296 4.7e-18 97.1 59 83.1
QL09p045974 Quercus lobata HOM05D003701 ORTHO05D030296 4.7e-18 97.1 59 83.1
VMungo0647G0194 Vigna mungo HOM05D003701 ORTHO05D432816 4.0e-17 94.0 82 63.4
FAN01G1877 Fragaria x ananassa HOM05D003701 ORTHO05D208017 2.0e-16 91.7 75 65.3
Oeu043945.1 Olea europaea HOM05D003701 ORTHO05D004771 6.3e-15 86.7 46 89.1
Medtr0368s0020 Medicago truncatula HOM05D003701 ORTHO05D026922 1.1e-14 85.9 50 80.0
Glyma.14G185666 Glycine max HOM05D003701 ORTHO05D026922 5.3e-14 83.6 47 85.1
FAN12G0587 Fragaria x ananassa HOM05D003701 ORTHO05D004771 4.5e-13 80.5 90 48.9
Rhsim05G0028600 Rhododendron simsii HOM05D000745 ORTHO05D000641 1.6e-10 72.0 134 41.8
Actinidia38274 Actinidia chinensis HOM05D003701 ORTHO05D012924 6.1e-10 70.1 44 75.0
MBI09_g06128_MAGBIO Magnolia biondii HOM05D018637 ORTHO05D012924 2.2e-07 61.6 43 65.1
C02p38530 Brassica napus HOM05D003701 ORTHO05D101262 3.1e-06 57.8 74 45.9
BolC2t09870H Brassica oleracea HOM05D003701 ORTHO05D041413 9.1e-06 56.2 74 47.3


User provided reference genes

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