Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04668 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 4.3e-192 674.5 338 100.0
Rhsim07G0210500 Rhododendron simsii HOM05D004160 ORTHO05D004757 1.7e-71 273.9 337 50.7
CSS0034828 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 3.0e-52 209.9 338 43.5
Hma1.2p1_0125F.1_g059040 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 8.7e-52 208.4 347 41.5
vmacro21323 Vaccinium macrocarpon HOM05D004160 ORTHO05D004757 1.3e-50 204.5 342 41.2
Gorai.009G230600 Gossypium raimondii HOM05D004160 ORTHO05D004757 4.8e-50 202.6 342 41.2
Dinv42627 Davidia involucrata HOM05D004160 ORTHO05D004757 8.2e-50 201.8 342 41.2
Hma1.2p1_0010F.1_g006920 Hydrangea macrophylla HOM05D004160 ORTHO05D004757 1.4e-49 201.1 339 40.4
CSS0013226 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.5e-48 197.6 341 40.2
CSS0048585 Camellia sinensis var. sinensis HOM05D004160 ORTHO05D004757 1.5e-48 197.6 341 40.2
GSVIVG01009149001 Vitis vinifera HOM05D004160 ORTHO05D004757 1.5e-48 197.6 340 40.9
Actinidia10375 Actinidia chinensis HOM05D004160 ORTHO05D004757 2.0e-48 197.2 354 40.1
Rhsim06G0073400 Rhododendron simsii HOM05D004160 ORTHO05D004757 2.0e-48 197.2 351 41.3
Potri.005G157500 Populus trichocarpa HOM05D004160 ORTHO05D004757 2.9e-47 193.4 343 39.1
LjContig00408g0003189 Lotus japonicus HOM05D004160 ORTHO05D004757 2.5e-46 190.3 338 39.3
MD15G1382900 Malus domestica HOM05D004160 ORTHO05D004757 2.5e-46 190.3 355 38.3
TWI36G0608 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 4.2e-46 189.5 348 37.6
Glyma.04G092300 Glycine max HOM05D004160 ORTHO05D004757 7.2e-46 188.7 335 40.0
DCAR_019307 Daucus carota HOM05D004160 ORTHO05D004757 9.4e-46 188.3 344 37.8
MD08G1195200 Malus domestica HOM05D004160 ORTHO05D004757 9.4e-46 188.3 355 38.3
Sabra02G0081700 Salix brachista HOM05D004160 ORTHO05D004757 1.6e-45 187.6 351 38.5
Gohir.A05G220700 Gossypium hirsutum HOM05D004160 ORTHO05D004757 4.6e-45 186.0 342 38.3
Actinidia29615 Actinidia chinensis HOM05D004160 ORTHO05D004757 6.1e-45 185.7 338 37.0
Cfa013695 Carpinus fangiana HOM05D004160 ORTHO05D004757 7.9e-45 185.3 347 37.8
Ciclev10002321m.g Citrus clementina HOM05D004160 ORTHO05D004757 7.9e-45 185.3 330 39.7
Gohir.D05G223500 Gossypium hirsutum HOM05D004160 ORTHO05D004757 7.9e-45 185.3 342 38.6
CAN.G1375.7 Capsicum annuum HOM05D004160 ORTHO05D004757 1.0e-44 184.9 352 37.8
Sopen04g030060 Solanum pennellii HOM05D004160 ORTHO05D004757 1.8e-44 184.1 348 37.9
Peaxi162Scf00281g00317 Petunia axillaris HOM05D004160 ORTHO05D004757 2.3e-44 183.7 344 38.1
Prupe.1G528700 Prunus persica HOM05D004160 ORTHO05D004757 2.3e-44 183.7 358 37.4
COL.COLO4_35202 Corchorus olitorius HOM05D004160 ORTHO05D004757 3.0e-44 183.3 348 37.1
Atru.chr13.1038 Acer truncatum HOM05D004160 ORTHO05D004757 3.9e-44 183.0 347 37.5
PGSC0003DMG401012897 Solanum tuberosum HOM05D004160 ORTHO05D004757 3.9e-44 183.0 348 38.2
arahy.Tifrunner.gnm1.ann1.GVS2KG Arachis hypogaea HOM05D004160 ORTHO05D004757 6.7e-44 182.2 339 38.9
arahy.Tifrunner.gnm1.ann1.RJ93MJ Arachis hypogaea HOM05D004160 ORTHO05D004757 6.7e-44 182.2 339 38.9
CiPaw.08G054600 Carya illinoinensis HOM05D004160 ORTHO05D004757 2.6e-43 180.3 340 38.5
Cpa.g.sc309.1 Carica papaya HOM05D004160 ORTHO05D004757 5.7e-43 179.1 362 37.3
Duzib041G0282 Durio zibethinus HOM05D004160 ORTHO05D004757 5.7e-43 179.1 352 37.2
HanXRQChr02g0047531 Helianthus annuus HOM05D004160 ORTHO05D004757 5.7e-43 179.1 344 38.4
Cc10_g15690 Coffea canephora HOM05D004160 ORTHO05D004757 7.4e-43 178.7 353 36.3
Manes.02G146200 Manihot esculenta HOM05D004160 ORTHO05D004757 1.3e-42 177.9 360 36.9
Nitab4.5_0003300g0030 Nicotiana tabacum HOM05D004160 ORTHO05D004757 1.3e-42 177.9 350 36.9
Solyc04g076110.4 Solanum lycopersicum HOM05D004160 ORTHO05D004757 1.3e-42 177.9 348 37.4
TWI56G0453 Tripterygium wilfordii HOM05D004160 ORTHO05D004757 1.3e-42 177.9 346 36.1
Gorai.009G279500 Gossypium raimondii HOM05D004160 ORTHO05D004757 1.7e-42 177.6 348 36.8
Lsat_1_v5_gn_1_1800 Lactuca sativa HOM05D004160 ORTHO05D004757 1.7e-42 177.6 348 37.4
Lalb_Chr10g0102681 Lupinus albus HOM05D004160 ORTHO05D004757 1.7e-42 177.6 331 38.4
Thecc.08G068800 Theobroma cacao HOM05D004160 ORTHO05D004757 2.2e-42 177.2 353 37.1
RcHm_v2.0_Chr7g0237181 Rosa chinensis HOM05D004160 ORTHO05D004757 2.8e-42 176.8 354 37.9
Psat2g066520 Pisum sativum HOM05D004160 ORTHO05D004757 3.7e-42 176.4 333 37.5
Gohir.D05G267400 Gossypium hirsutum HOM05D004160 ORTHO05D004757 4.8e-42 176.0 348 36.5
FAN18G3264 Fragaria x ananassa HOM05D004160 ORTHO05D004757 6.3e-42 175.6 366 36.6
PGR042G0674 Punica granatum HOM05D004160 ORTHO05D004757 6.3e-42 175.6 350 36.3
Lalb_Chr04g0252941 Lupinus albus HOM05D004160 ORTHO05D004757 8.2e-42 175.3 332 37.3
Dinv44844 Davidia involucrata HOM05D004160 ORTHO05D004757 1.1e-41 174.9 177 55.9
Phvul.008G180400 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 1.1e-41 174.9 348 38.2
QL09p017310 Quercus lobata HOM05D004160 ORTHO05D004757 1.4e-41 174.5 345 36.5
VMungo1309G1362 Vigna mungo HOM05D004160 ORTHO05D004757 1.8e-41 174.1 346 36.4
Gohir.A05G265100 Gossypium hirsutum HOM05D004160 ORTHO05D004757 2.4e-41 173.7 348 36.8
arahy.Tifrunner.gnm1.ann1.IX6BVV Arachis hypogaea HOM05D004160 ORTHO05D004757 3.1e-41 173.3 344 38.1
Eucgr.F00408 Eucalyptus grandis HOM05D004160 ORTHO05D004757 4.1e-41 172.9 357 36.1
FAN04G0528 Fragaria x ananassa HOM05D004160 ORTHO05D004757 6.9e-41 172.2 357 36.1
arahy.Tifrunner.gnm1.ann1.BVU39Z Arachis hypogaea HOM05D004160 ORTHO05D004757 9.1e-41 171.8 344 37.8
AUR62019025 Chenopodium quinoa HOM05D004160 ORTHO05D004757 1.2e-40 171.4 332 36.4
FAN13G3204 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.2e-40 171.4 363 36.4
Nn5g29924 Nelumbo nucifera HOM05D004160 ORTHO05D004757 1.2e-40 171.4 336 37.2
Hund27011 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.2e-40 171.4 352 34.7
TPR.G16029 Trifolium pratense HOM05D004160 ORTHO05D004757 1.2e-40 171.4 333 36.9
Ca_05405_v3 Cicer arietinum L. HOM05D004160 ORTHO05D004757 1.5e-40 171.0 330 37.6
FAN08G0272 Fragaria x ananassa HOM05D004160 ORTHO05D004757 1.5e-40 171.0 362 35.9
Lj4C734G12 Lonicera japonica HOM05D004160 ORTHO05D004757 1.5e-40 171.0 333 36.6
Eucgr.F02134 Eucalyptus grandis HOM05D004160 ORTHO05D004757 2.6e-40 170.2 346 35.3
Glyma.06G094100 Glycine max HOM05D004160 ORTHO05D004757 2.6e-40 170.2 340 37.4
Medtr5g065930 Medicago truncatula HOM05D004160 ORTHO05D004757 2.6e-40 170.2 338 36.1
CANSAT25G1973 Cannabis sativa HOM05D004160 ORTHO05D004757 3.4e-40 169.9 340 36.2
TAR381G1705 Trochodendron aralioides HOM05D004160 ORTHO05D004757 5.9e-40 169.1 341 38.1
AUR62027862 Chenopodium quinoa HOM05D004160 ORTHO05D004757 7.7e-40 168.7 332 35.5
Potri.002G104200 Populus trichocarpa HOM05D004160 ORTHO05D004757 1.0e-39 168.3 347 35.4
TAR625G1241 Trochodendron aralioides HOM05D004160 ORTHO05D004757 2.2e-39 167.2 335 37.6
ECA247G3853 Erigeron canadensis HOM05D004160 ORTHO05D004757 2.9e-39 166.8 339 36.6
Sc01g0001090 Simmondsia chinensis HOM05D004160 ORTHO05D004757 1.1e-38 164.9 344 34.3
SalBow1G6265 Salvia bowleyana HOM05D004160 ORTHO05D004757 1.9e-38 164.1 341 36.7
Aqoxy5G01323 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 3.2e-38 163.3 347 36.6
Sabra05G0120500 Salix brachista HOM05D004160 ORTHO05D004757 3.2e-38 163.3 179 53.1
Sed0023007 Sechium edule HOM05D004160 ORTHO05D004757 3.2e-38 163.3 327 36.1
Duzib093G1656 Durio zibethinus HOM05D004160 ORTHO05D004757 5.5e-38 162.5 348 37.4
Migut.K00588 Erythranthe guttata HOM05D004160 ORTHO05D004757 5.5e-38 162.5 343 36.2
Sed0000869 Sechium edule HOM05D004160 ORTHO05D004757 6.1e-37 159.1 333 36.0
Ah.05g170710 Amaranthus hybridus HOM05D004160 ORTHO05D004757 8.0e-37 158.7 350 34.3
EL10Ac1g01077 Beta vulgaris HOM05D004160 ORTHO05D004757 8.0e-37 158.7 348 33.3
VMungo0647G1165 Vigna mungo HOM05D004160 ORTHO05D004757 5.2e-36 156.0 346 35.0
ClCG08G011790 Citrullus lanatus HOM05D004160 ORTHO05D004757 6.7e-36 155.6 360 35.6
CsaV3_2G030410 Cucumis sativus L. HOM05D004160 ORTHO05D004757 8.8e-36 155.2 338 34.9
Nitab4.5_0000131g0400 Nicotiana tabacum HOM05D004160 ORTHO05D004757 1.1e-35 154.8 298 37.2
Oeu011647.1 Olea europaea HOM05D004160 ORTHO05D004757 2.6e-35 153.7 336 35.4
SGA_v2.0_scaffold107G30821 Striga asiatica HOM05D004160 ORTHO05D004757 2.6e-35 153.7 350 35.1
DCAR_012861 Daucus carota HOM05D004160 ORTHO05D004757 9.7e-35 151.8 356 33.7
FvH4_5g35650 Fragaria vesca HOM05D004160 ORTHO05D004757 9.7e-35 151.8 193 47.7
CiPaw.07G167300 Carya illinoinensis HOM05D004160 ORTHO05D004757 1.3e-34 151.4 188 46.8
PSO017G5904 Papaver somniferum HOM05D004160 ORTHO05D004757 2.8e-34 150.2 339 34.8
unitig_85.g27260 Utricularia gibba HOM05D004160 ORTHO05D004757 3.7e-34 149.8 350 33.7
Haze_22335 Corylus avellana HOM05D004160 ORTHO05D004757 4.8e-34 149.4 276 36.6
Aqoxy6G01454 Aquilegia oxysepala HOM05D004160 ORTHO05D004757 6.3e-34 149.1 348 33.3
Migut.H00368 Erythranthe guttata HOM05D004160 ORTHO05D004757 4.1e-33 146.4 335 33.1
CDE06G1108 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 7.0e-33 145.6 331 33.2
MBI06_g36045_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 9.1e-33 145.2 338 34.9
Phvul.009G143600 Phaseolus vulgaris HOM05D004160 ORTHO05D004757 1.6e-32 144.4 163 51.5
Manes.18G060500 Manihot esculenta HOM05D004160 ORTHO05D004757 2.0e-32 144.1 185 47.0
CDE08G0105 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 7.7e-32 142.1 331 32.0
AT5G49710 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.0e-31 141.7 342 32.5
THA.LOC104799806 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 1.0e-31 141.7 349 32.4
Aa31sc399G20 Aethionema arabicum HOM05D004160 ORTHO05D004757 1.7e-31 141.0 349 32.7
MELO3C011103.2 Cucumis melo HOM05D004160 ORTHO05D004757 2.2e-31 140.6 175 49.1
AL8G23640 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 2.9e-31 140.2 349 31.8
ATR0022G063 Amborella trichopoda HOM05D004160 ORTHO05D004757 3.8e-31 139.8 169 49.1
TAR381G1580 Trochodendron aralioides HOM05D004160 ORTHO05D004757 1.1e-30 138.3 182 49.5
THA.LOC104800042 Tarenaya hassleriana HOM05D004160 ORTHO05D004757 2.5e-30 137.1 350 32.3
BraA08t34092Z Brassica rapa HOM05D004160 ORTHO05D004757 9.4e-30 135.2 344 32.3
BcaC06g32873 Brassica carinata HOM05D004160 ORTHO05D004757 4.7e-29 132.9 343 30.9
Sp7g22590 Schrenkiella parvula HOM05D004160 ORTHO05D004757 4.7e-29 132.9 348 31.3
Carub.0008s0959 Capsella rubella HOM05D004160 ORTHO05D004757 6.1e-29 132.5 360 32.2
BolC7t45862H Brassica oleracea HOM05D004160 ORTHO05D004757 8.0e-29 132.1 347 30.8
Thhalv10026080m.g Eutrema salsugineum HOM05D004160 ORTHO05D004757 8.0e-29 132.1 346 30.6
AT4G24590 Arabidopsis thaliana HOM05D004160 ORTHO05D004757 1.8e-28 131.0 341 30.8
C07p53710 Brassica napus HOM05D004160 ORTHO05D004757 2.3e-28 130.6 346 30.6
MSTRG.23691 Avicennia marina HOM05D004160 ORTHO05D004757 4.0e-28 129.8 336 31.5
BcaNung04961 Brassica carinata HOM05D004160 ORTHO05D004757 4.0e-28 129.8 362 30.1
HPP92_002309 Vanilla planifolia HOM05D004160 ORTHO05D004757 8.8e-28 128.6 334 29.9
PSO541G4918 Papaver somniferum HOM05D004160 ORTHO05D004757 1.2e-27 128.3 334 29.3
BraA03t14616Z Brassica rapa HOM05D004160 ORTHO05D004757 2.6e-27 127.1 346 30.6
AL7G28600 Arabidopsis lyrata HOM05D004160 ORTHO05D004757 4.4e-27 126.3 341 30.5
Os02g0781700 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 5.7e-27 125.9 360 31.7
CARHR231990 Cardamine hirsuta HOM05D004160 ORTHO05D004757 9.7e-27 125.2 336 29.8
A03p55420 Brassica napus HOM05D004160 ORTHO05D004757 1.7e-26 124.4 348 30.5
A08p21430 Brassica napus HOM05D004160 ORTHO05D004757 1.7e-26 124.4 343 31.2
Carub.0007s1648 Capsella rubella HOM05D004160 ORTHO05D004757 2.2e-26 124.0 341 29.6
SEGI_35412 Sequoiadendron giganteum HOM05D004160 ORTHO05D004757 1.1e-25 121.7 348 29.0
BolC1t01921H Brassica oleracea HOM05D004160 ORTHO05D004757 1.8e-25 120.9 361 29.6
Hund16867 Selenicereus undatus HOM05D004160 ORTHO05D004757 1.8e-25 120.9 348 29.0
Aa31LG4G9680 Aethionema arabicum HOM05D004160 ORTHO05D004757 3.1e-25 120.2 347 30.3
BcaB03g12437 Brassica carinata HOM05D004160 ORTHO05D004757 3.1e-25 120.2 358 30.4
Oeu012754.1 Olea europaea HOM05D004160 ORTHO05D004757 3.1e-25 120.2 329 32.5
C01p19930 Brassica napus HOM05D004160 ORTHO05D004757 9.1e-25 118.6 361 29.4
SGA_v2.0_scaffold15G07419 Striga asiatica HOM05D004160 ORTHO05D004757 2.7e-24 117.1 347 31.7
A01p15950 Brassica napus HOM05D004160 ORTHO05D004757 3.5e-24 116.7 357 29.4
MBI02_g09036_MAGBIO Magnolia biondii HOM05D004160 ORTHO05D004757 3.5e-24 116.7 232 37.1
PSO675G9245 Papaver somniferum HOM05D004160 ORTHO05D004757 5.9e-24 115.9 333 28.8
BraA01t01529Z Brassica rapa HOM05D004160 ORTHO05D004757 7.7e-24 115.5 357 29.4
BcaC09g50849 Brassica carinata HOM05D004160 ORTHO05D004757 2.5e-22 110.5 351 29.6
Zm00001eb257060 Zea mays HOM05D004160 ORTHO05D004757 3.2e-22 110.2 186 40.3
BcaC07g38165 Brassica carinata HOM05D004160 ORTHO05D004757 8.0e-21 105.5 346 29.2
BolC8t48579H Brassica oleracea HOM05D004160 ORTHO05D004757 3.4e-19 100.1 333 29.1
Zm00001eb101080 Zea mays HOM05D004160 ORTHO05D004757 3.7e-18 96.7 347 27.1
CARHR259070 Cardamine hirsuta HOM05D004160 ORTHO05D004757 9.1e-17 92.0 276 29.7
Zm00001eb315410 Zea mays HOM05D004160 ORTHO05D004757 2.9e-15 87.0 301 27.9
Os09g0465500 Oryza sativa ssp. japonica HOM05D004160 ORTHO05D004757 1.0e-12 78.6 358 24.3
Glyma.12G143501 Glycine max HOM05D000739 ORTHO05D004757 8.9e-12 75.5 73 54.8
SHI28776 Sapria himalayana HOM05D004160 ORTHO05D004757 8.9e-12 75.5 53 62.3
Mapoly0023s0096 Marchantia polymorpha HOM05D004160 ORTHO05D004757 4.1e-09 66.6 189 29.6
CDE06G2402 Ceratophyllum demersum HOM05D004160 ORTHO05D004757 1.2e-08 65.1 36 77.8
Zm00001eb401670 Zea mays HOM05D004160 ORTHO05D004757 4.5e-08 63.2 68 51.5
Zm00001eb015350 Zea mays HOM05D004160 ORTHO05D004757 1.7e-07 61.2 38 71.1
Mapoly0023s0095 Marchantia polymorpha HOM05D004967 ORTHO05D004757 1.5e-06 58.2 192 28.6
AagrBONN_evm.TU.Sc2ySwM_344.3696 Anthoceros agrestis HOM05D004160 ORTHO05D004757 4.3e-06 56.6 199 27.1


User provided reference genes

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