Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
vmacro04640 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 4.9e-163 577.8 302 100.0
Actinidia19621 Actinidia chinensis HOM05D002920 ORTHO05D003118 3.4e-116 422.2 306 74.5
Dinv44873 Davidia involucrata HOM05D002920 ORTHO05D003118 3.9e-112 408.7 288 74.0
Rhsim07G0212900 Rhododendron simsii HOM05D002920 ORTHO05D003118 1.1e-109 400.6 228 89.9
Cfa013811 Carpinus fangiana HOM05D002920 ORTHO05D003118 7.4e-103 377.9 288 67.7
TAR625G0757 Trochodendron aralioides HOM05D002920 ORTHO05D003118 7.4e-103 377.9 289 68.9
CiPaw.07G163600 Carya illinoinensis HOM05D002920 ORTHO05D003118 1.7e-102 376.7 286 68.5
QL09p018218 Quercus lobata HOM05D002920 ORTHO05D003118 1.2e-100 370.5 288 68.1
CsaV3_2G030160 Cucumis sativus L. HOM05D002920 ORTHO05D003118 1.6e-100 370.2 289 66.1
TWI56G0278 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 2.0e-100 369.8 288 66.0
TPR.G6371 Trifolium pratense HOM05D002920 ORTHO05D003118 3.5e-100 369.0 289 65.7
Psat5g047200 Pisum sativum HOM05D002920 ORTHO05D003118 4.5e-100 368.6 289 66.8
Medtr3g099880 Medicago truncatula HOM05D002920 ORTHO05D003118 5.9e-100 368.2 283 66.1
VMungo1309G0011 Vigna mungo HOM05D002920 ORTHO05D003118 5.9e-100 368.2 289 65.1
ClCG08G011580 Citrullus lanatus HOM05D002920 ORTHO05D003118 7.7e-100 367.9 290 66.6
MELO3C011076.2 Cucumis melo HOM05D002920 ORTHO05D003118 7.7e-100 367.9 289 65.4
GSVIVG01009199001 Vitis vinifera HOM05D002920 ORTHO05D003118 7.7e-100 367.9 299 66.6
Ciclev10000004m.g Citrus clementina HOM05D002920 ORTHO05D003118 1.7e-99 366.7 291 65.6
Potri.002G110700 Populus trichocarpa HOM05D002920 ORTHO05D003118 1.7e-99 366.7 288 65.3
Glyma.06G098300 Glycine max HOM05D002920 ORTHO05D003118 5.0e-99 365.2 289 65.1
Ca_16019_v3 Cicer arietinum L. HOM05D002920 ORTHO05D003118 6.5e-99 364.8 300 64.0
Atru.chr13.988 Acer truncatum HOM05D002920 ORTHO05D003118 3.2e-98 362.5 292 65.4
Sabra02G0087200 Salix brachista HOM05D002920 ORTHO05D003118 3.2e-98 362.5 288 64.9
Phvul.009G035200 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 3.0e-96 355.9 289 64.4
TWI12G0386 Tripterygium wilfordii HOM05D002920 ORTHO05D003118 3.0e-96 355.9 288 64.6
arahy.Tifrunner.gnm1.ann1.3DHU48 Arachis hypogaea HOM05D002920 ORTHO05D003118 8.8e-96 354.4 289 62.6
arahy.Tifrunner.gnm1.ann1.WZJ2AS Arachis hypogaea HOM05D002920 ORTHO05D003118 1.2e-95 354.0 289 63.0
Nn1g05621 Nelumbo nucifera HOM05D002920 ORTHO05D003118 4.4e-95 352.1 289 64.0
Lsat_1_v5_gn_1_1961 Lactuca sativa HOM05D002920 ORTHO05D003118 7.5e-95 351.3 298 63.4
Sed0007128 Sechium edule HOM05D002920 ORTHO05D003118 9.8e-95 350.9 290 64.1
Lalb_Chr08g0242591 Lupinus albus HOM05D002920 ORTHO05D003118 2.8e-94 349.4 289 63.0
Migut.N02861 Erythranthe guttata HOM05D002920 ORTHO05D003118 3.7e-94 349.0 290 63.8
COL.COLO4_35270 Corchorus olitorius HOM05D002920 ORTHO05D003118 6.3e-94 348.2 292 63.4
Nitab4.5_0005345g0040 Nicotiana tabacum HOM05D002920 ORTHO05D003118 1.4e-93 347.1 288 64.9
Thecc.08G073100 Theobroma cacao HOM05D002920 ORTHO05D003118 1.4e-93 347.1 288 64.2
Aqoxy5G01357 Aquilegia oxysepala HOM05D002920 ORTHO05D003118 4.1e-93 345.5 290 62.1
Peaxi162Scf01112g00017 Petunia axillaris HOM05D002920 ORTHO05D003118 4.1e-93 345.5 289 65.4
Manes.18G056500 Manihot esculenta HOM05D002920 ORTHO05D003118 7.0e-93 344.7 286 61.9
Lj1g0004035 Lotus japonicus HOM05D002920 ORTHO05D003118 1.2e-92 344.0 290 62.4
HanXRQChr02g0046051 Helianthus annuus HOM05D002920 ORTHO05D003118 1.6e-92 343.6 291 63.2
Nitab4.5_0000131g0060 Nicotiana tabacum HOM05D002920 ORTHO05D003118 2.7e-92 342.8 301 62.8
CAN.G193.3 Capsicum annuum HOM05D002920 ORTHO05D003118 3.5e-92 342.4 295 63.1
Cc10_g08510 Coffea canephora HOM05D002920 ORTHO05D003118 7.7e-92 341.3 288 63.9
PSO170G4177 Papaver somniferum HOM05D002920 ORTHO05D003118 1.0e-91 340.9 293 63.8
ECA247G2620 Erigeron canadensis HOM05D002920 ORTHO05D003118 1.3e-91 340.5 299 61.5
PSO210G5781 Papaver somniferum HOM05D002920 ORTHO05D003118 2.9e-91 339.3 293 63.5
THA.LOC104823692 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 3.8e-91 339.0 279 65.2
CANSAT11G0038 Cannabis sativa HOM05D002920 ORTHO05D003118 5.0e-91 338.6 288 60.1
Duzib116G0095 Durio zibethinus HOM05D002920 ORTHO05D003118 6.5e-91 338.2 288 62.5
PGR042G2097 Punica granatum HOM05D002920 ORTHO05D003118 6.5e-91 338.2 292 63.0
Lj4C86G6 Lonicera japonica HOM05D002920 ORTHO05D003118 1.1e-90 337.4 293 64.2
MD08G1201800 Malus domestica HOM05D002920 ORTHO05D003118 1.9e-90 336.7 293 62.1
Sopen04g030270 Solanum pennellii HOM05D002920 ORTHO05D003118 1.9e-90 336.7 301 62.1
SalBow2G2368 Salvia bowleyana HOM05D002920 ORTHO05D003118 3.2e-90 335.9 288 63.5
Solyc04g076550.3 Solanum lycopersicum HOM05D002920 ORTHO05D003118 5.5e-90 335.1 301 61.1
Sed0001865 Sechium edule HOM05D002920 ORTHO05D003118 1.2e-89 334.0 308 59.7
Gohir.A05G218800 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.8e-88 330.1 288 61.5
Gohir.D05G221500 Gossypium hirsutum HOM05D002920 ORTHO05D003118 3.0e-88 329.3 288 61.5
Gorai.009G228700 Gossypium raimondii HOM05D002920 ORTHO05D003118 3.0e-88 329.3 288 61.5
Rhsim06G0070200 Rhododendron simsii HOM05D002920 ORTHO05D003118 3.0e-88 329.3 347 57.6
MSTRG.24431 Avicennia marina HOM05D002920 ORTHO05D003118 8.8e-88 327.8 299 58.9
MD08G1202500 Malus domestica HOM05D002920 ORTHO05D003118 2.0e-87 326.6 289 60.9
AUR62014366 Chenopodium quinoa HOM05D002920 ORTHO05D003118 4.4e-87 325.5 299 58.9
MBI16_g06013_MAGBIO Magnolia biondii HOM05D002920 ORTHO05D003118 1.3e-86 323.9 284 62.7
Sc26g0003000 Simmondsia chinensis HOM05D002920 ORTHO05D003118 2.2e-86 323.2 289 62.3
MD15G1388100 Malus domestica HOM05D002920 ORTHO05D003118 4.9e-86 322.0 299 58.2
Aa31LG2G10870 Aethionema arabicum HOM05D002920 ORTHO05D003118 6.3e-86 321.6 310 58.4
EL10Ac1g00492 Beta vulgaris HOM05D002920 ORTHO05D003118 6.3e-86 321.6 291 59.5
Duzib041G0528 Durio zibethinus HOM05D002920 ORTHO05D003118 6.3e-86 321.6 288 59.0
Thhalv10023209m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.4e-85 320.5 289 60.6
Carub.0002s0632 Capsella rubella HOM05D002920 ORTHO05D003118 2.4e-85 319.7 288 60.1
Prupe.1G535700 Prunus persica HOM05D002920 ORTHO05D003118 4.1e-85 318.9 309 58.6
AT1G58250 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 7.0e-85 318.2 288 60.4
AL2G18260 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 9.1e-85 317.8 297 58.6
C09p23100 Brassica napus HOM05D002920 ORTHO05D003118 1.2e-84 317.4 287 59.6
BolC9t55228H Brassica oleracea HOM05D002920 ORTHO05D003118 1.2e-84 317.4 287 59.6
SGA_v2.0_scaffold235G43665 Striga asiatica HOM05D002920 ORTHO05D003118 1.2e-84 317.4 286 58.7
A09p18500 Brassica napus HOM05D002920 ORTHO05D003118 1.6e-84 317.0 287 59.6
BraA09t37476Z Brassica rapa HOM05D002920 ORTHO05D003118 1.6e-84 317.0 287 59.6
AUR62019108 Chenopodium quinoa HOM05D002920 ORTHO05D003118 2.0e-84 316.6 293 59.0
Ah.05g171450 Amaranthus hybridus HOM05D002920 ORTHO05D003118 3.8e-83 312.4 302 57.0
BcaB04g20194 Brassica carinata HOM05D002920 ORTHO05D003118 2.5e-82 309.7 289 58.1
FAN04G1888 Fragaria x ananassa HOM05D002920 ORTHO05D003118 9.5e-82 307.8 297 57.2
Sp2g05360 Schrenkiella parvula HOM05D002920 ORTHO05D003118 9.5e-82 307.8 288 59.0
FvH4_5g34390 Fragaria vesca HOM05D002920 ORTHO05D003118 2.1e-81 306.6 297 56.9
C01p35910 Brassica napus HOM05D002920 ORTHO05D003118 3.6e-81 305.8 308 55.8
BolC1t03549H Brassica oleracea HOM05D002920 ORTHO05D003118 3.6e-81 305.8 308 55.8
DCAR_024958 Daucus carota HOM05D002920 ORTHO05D003118 6.1e-81 305.1 275 61.1
FAN08G1437 Fragaria x ananassa HOM05D002920 ORTHO05D003118 6.1e-81 305.1 297 56.6
FAN18G2688 Fragaria x ananassa HOM05D002920 ORTHO05D003118 6.1e-81 305.1 297 56.6
BcaC09g49498 Brassica carinata HOM05D002920 ORTHO05D003118 8.0e-81 304.7 308 55.5
BcaC04g22122 Brassica carinata HOM05D002920 ORTHO05D003118 1.8e-80 303.5 287 58.2
A01p28350 Brassica napus HOM05D002920 ORTHO05D003118 1.8e-80 303.5 289 57.4
BraA01t02963Z Brassica rapa HOM05D002920 ORTHO05D003118 1.8e-80 303.5 289 57.4
CDE07G0230 Ceratophyllum demersum HOM05D002920 ORTHO05D003118 4.0e-80 302.4 287 56.8
CARHR053740 Cardamine hirsuta HOM05D002920 ORTHO05D003118 4.4e-79 298.9 288 56.6
Lalb_Chr10g0102771 Lupinus albus HOM05D002920 ORTHO05D003118 3.9e-75 285.8 292 52.7
Solyc12g088010.2 Solanum lycopersicum HOM05D002920 ORTHO05D003118 2.1e-73 280.0 305 53.8
CAN.G1104.6 Capsicum annuum HOM05D002920 ORTHO05D003118 6.2e-73 278.5 292 55.5
Peaxi162Scf00160g01034 Petunia axillaris HOM05D002920 ORTHO05D003118 2.3e-72 276.6 278 57.6
Actinidia29660 Actinidia chinensis HOM05D002920 ORTHO05D003118 6.8e-72 275.0 200 76.5
Psat2g064080 Pisum sativum HOM05D002920 ORTHO05D003118 6.8e-72 275.0 286 52.4
Nn7g36727 Nelumbo nucifera HOM05D002920 ORTHO05D003118 3.4e-71 272.7 303 52.1
LjContig00408g0017356 Lotus japonicus HOM05D002920 ORTHO05D003118 4.4e-71 272.3 289 52.2
RcHm_v2.0_Chr7g0235031 Rosa chinensis HOM05D002920 ORTHO05D003118 7.5e-71 271.6 219 66.2
Sopen12g030040 Solanum pennellii HOM05D002920 ORTHO05D003118 4.6e-68 262.3 279 54.5
Hund26821 Selenicereus undatus HOM05D002920 ORTHO05D003118 1.3e-67 260.8 234 58.5
Glyma.02G215800 Glycine max HOM05D002920 ORTHO05D003118 1.7e-67 260.4 289 49.5
Medtr5g066650 Medicago truncatula HOM05D002920 ORTHO05D003118 3.9e-67 259.2 298 50.3
Haze_22482 Corylus avellana HOM05D002920 ORTHO05D003118 1.1e-66 257.7 251 57.8
HPP92_024863 Vanilla planifolia HOM05D002920 ORTHO05D003118 1.1e-66 257.7 290 47.6
ATR0767G155 Amborella trichopoda HOM05D002920 ORTHO05D003118 3.6e-65 252.7 253 53.0
Gohir.D05G266900 Gossypium hirsutum HOM05D002920 ORTHO05D003118 1.3e-62 244.2 294 48.0
Gorai.009G279000 Gossypium raimondii HOM05D002920 ORTHO05D003118 1.3e-62 244.2 294 48.0
ECA232G1296 Erigeron canadensis HOM05D002920 ORTHO05D003118 3.7e-62 242.7 308 46.4
TPR.G30876 Trifolium pratense HOM05D002920 ORTHO05D003118 8.3e-62 241.5 308 44.5
TPR.G26343 Trifolium pratense HOM05D002920 ORTHO05D003118 9.2e-61 238.0 309 45.0
HanXRQChr14g0447811 Helianthus annuus HOM05D002920 ORTHO05D003118 6.0e-60 235.3 301 48.2
THA.LOC104817630 Tarenaya hassleriana HOM05D002920 ORTHO05D003118 8.1e-57 224.9 302 41.4
Thhalv10000004m.g Eutrema salsugineum HOM05D002920 ORTHO05D003118 1.8e-56 223.8 295 43.1
arahy.Tifrunner.gnm1.ann1.GN9VME Arachis hypogaea HOM05D002920 ORTHO05D003118 8.4e-54 214.9 299 43.1
arahy.Tifrunner.gnm1.ann1.LW385E Arachis hypogaea HOM05D002920 ORTHO05D003118 1.4e-53 214.2 300 42.3
AL8G23560 Arabidopsis lyrata HOM05D002920 ORTHO05D003118 3.2e-53 213.0 303 39.9
Sp4g01560 Schrenkiella parvula HOM05D002920 ORTHO05D003118 5.4e-53 212.2 293 42.0
CARHR259160 Cardamine hirsuta HOM05D002920 ORTHO05D003118 2.1e-52 210.3 314 41.7
Nitab4.5_0000354g0140 Nicotiana tabacum HOM05D002920 ORTHO05D003118 6.0e-52 208.8 272 49.6
AT5G49680 Arabidopsis thaliana HOM05D002920 ORTHO05D003118 5.1e-51 205.7 303 38.9
Phvul.008G183000 Phaseolus vulgaris HOM05D002920 ORTHO05D003118 8.6e-51 204.9 274 44.2
unitig_578.g16182 Utricularia gibba HOM05D002920 ORTHO05D003118 1.2e-49 201.1 341 39.9
Aa31LG4G11400 Aethionema arabicum HOM05D002920 ORTHO05D003118 1.6e-49 200.7 293 42.7
Carub.0008s0955 Capsella rubella HOM05D002920 ORTHO05D003118 4.7e-49 199.1 284 42.6
Glyma.04G096666 Glycine max HOM05D002920 ORTHO05D003118 4.0e-48 196.1 124 77.4
BcaC02g08647 Brassica carinata HOM05D002920 ORTHO05D003118 1.9e-45 187.2 290 39.0
BolC4t26752H Brassica oleracea HOM05D002920 ORTHO05D003118 1.9e-45 187.2 297 38.4
Eucgr.F00435 Eucalyptus grandis HOM05D002920 ORTHO05D003118 3.2e-45 186.4 182 56.6
C04p51730 Brassica napus HOM05D002920 ORTHO05D003118 3.3e-42 176.4 299 37.1
A04p17040 Brassica napus HOM05D002920 ORTHO05D003118 2.1e-41 173.7 299 38.5
BraA04t17332Z Brassica rapa HOM05D002920 ORTHO05D003118 8.1e-41 171.8 297 38.4
Cpa.g.sc21.38 Carica papaya HOM05D002920 ORTHO05D003118 1.4e-40 171.0 163 54.6
vmacro21355 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 1.8e-40 170.6 178 58.4
SHI01002 Sapria himalayana HOM05D002920 ORTHO05D003118 1.9e-37 160.6 326 33.7
Nitab4.5_0005065g0010 Nicotiana tabacum HOM05D002920 ORTHO05D003118 9.3e-37 158.3 289 38.8
SMO116G0207 Selaginella moellendorffii HOM05D002920 ORTHO05D003118 3.5e-36 156.4 240 37.9
Pp3c12_12980 Physcomitrium patens HOM05D002920 ORTHO05D003118 3.0e-35 153.3 267 35.6
Lsat_1_v5_gn_9_80721 Lactuca sativa HOM05D002920 ORTHO05D003118 6.2e-33 145.6 142 57.0
Psat2g086080 Pisum sativum HOM05D002920 ORTHO05D003118 5.3e-32 142.5 134 52.2
SEGI_25281 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 3.4e-31 139.8 126 52.4
MD08G1208100 Malus domestica HOM05D002920 ORTHO05D003118 6.0e-28 129.0 94 68.1
vmacro21356 Vaccinium macrocarpon HOM05D002920 ORTHO05D003118 5.1e-27 125.9 94 74.5
HPP92_018504 Vanilla planifolia HOM05D002920 ORTHO05D003118 1.1e-26 124.8 136 45.6
AagrBONN_evm.TU.Sc2ySwM_344.1562 Anthoceros agrestis HOM05D002920 ORTHO05D003118 3.3e-26 123.2 243 33.7
Os03g0681201 Oryza sativa ssp. japonica HOM05D002920 ORTHO05D003118 1.3e-25 121.3 85 65.9
CBR_g40338 Chara braunii HOM05D002920 ORTHO05D003118 4.9e-22 109.4 265 29.4
Mapoly0099s0021 Marchantia polymorpha HOM05D002920 ORTHO05D003118 2.5e-21 107.1 250 27.2
Hund17266 Selenicereus undatus HOM05D002920 ORTHO05D003118 2.8e-17 93.6 98 51.0
VMungo0647G0360 Vigna mungo HOM05D002920 ORTHO05D003118 1.8e-16 90.9 116 43.1
Sp1g33855 Schrenkiella parvula HOM05D002920 ORTHO05D003118 6.9e-16 89.0 275 27.3
Manes.05G189400 Manihot esculenta HOM05D002920 ORTHO05D003118 3.4e-15 86.7 95 49.5
SEGI_34078 Sequoiadendron giganteum HOM05D002920 ORTHO05D003118 1.6e-12 77.8 119 39.5
CSS0046161 Camellia sinensis var. sinensis HOM05D002920 ORTHO05D003118 6.1e-12 75.9 75 58.7
DCAR_032088 Daucus carota HOM05D002920 ORTHO05D003118 4.3e-10 69.7 90 42.2
Hund17267 Selenicereus undatus HOM05D002920 ORTHO05D003118 4.3e-10 69.7 91 46.2
C08p07090 Brassica napus HOM05D002920 ORTHO05D003118 5.7e-10 69.3 289 25.3
BolC8t47553H Brassica oleracea HOM05D002920 ORTHO05D003118 5.7e-10 69.3 289 25.3
BraA08t32630Z Brassica rapa HOM05D002920 ORTHO05D003118 1.3e-09 68.2 289 25.3
A08p06260 Brassica napus HOM05D002920 ORTHO05D003118 2.8e-09 67.0 289 25.3
SHI01003 Sapria himalayana HOM05D002876 ORTHO05D003118 1.1e-08 65.1 37 78.4
BcaC07g37279 Brassica carinata HOM05D002920 ORTHO05D003118 6.9e-08 62.4 269 24.9


User provided reference genes

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